Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010249

Physical Location & Seq

Genomic Coordinates Reverse (-)

9320190 .. 9322867

Gene Structure 2678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGTACGCTTCTCGTTTTCTCTCCAGATCTAAGCAGCTACAGGGGGGTCTGGTCATTTTGCAGCAGCAACATGCTATTCCAGTCCGAGCTTTTGCTAAGGAAGCTGCTCGTCCAACCTTTAAAGGAGATGAGATGTTGAAGGGTGTCTTTTTTGATATCAAGAACAAATTCCAGGCTGCTGTTGATATTCTCCGTAAGGAAAAGATCACCCTTGATCCAGAGGACCCAGCTGCCGTAAAACAGTATGCAAATGTAATGAAGACCATCAGGCAAAAGGCAGACATGTTCTCAGAATCTCAGCGCATTAAACATGACATTGATACTGAGACTCAAGACATTCCAGATGCTCGTGCATACTTGTTGAAGTTGCAGGAAATTCGCACCAGGAGGGGGCTTACTGATGAGCTTGGTGCTGAGGCCATGATGTTCGAGGCTTTGGAGAAAGTCGAGAAGGACATAAAGAAGCCTCTCCTGAGAAGTGACAAGAAAGGAATGGATCTTTTGGTTGCAGAGTTTGAGAAAGGCAACAAAAAGCTTGGGATTAGGAAAGAAGATCTTCCTAAGTACGAAGAAAATTTGGAGCTCAGCATGGCCAAAGCACAGTTGGATGAGCTGAAGAGTGATGCTGTTGAAGCTATGGAATCTCAGAAAAAGAAGGAGGAATTCCAGGATGAGGAAATGCCGGACGTGAAGTCTCTAGACATCCGTAACTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0007275 GO:0008150 GO:0008270 GO:0009507 GO:0009536 GO:0009555 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0048229 GO:0048856 GO:0050897 GO:0070013 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mt_ATP_synt

Protein Analysis

240

Amino Acids

27.6

Weight (kDa)

6.27

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mt_ATP_synt	PF15704	33 - 219	7.8e-82	Mitochondrial ATP synthase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21870 AT2G21870
fragaria_vesca	FvH4_1g22890
malus_domestica	MD01G1021000.v1.1 MD15G1331100.v1.1
prunus_persica	Prupe.6G169300_v2.0.a1
pyrus_communis	pycom01g05060 pycom15g29410
rosa_chinensis	RchiOBHm_Chr2g0117231
rosa_laevigata	RLG00000018337
rosa_multiflora	Rmu_co8431947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126620
rosa_rugosa	Rorug02G0211500
rosa_samantha	Rh2AG267100 Rh2AG268800 Rh2BG279400 Rh2DG274000 Rh2DG275900 Rh2DG293400
rosa_wichuraiana	Rw2G021080 Rw2G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	212, 507
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	4 cut(s)	170, 378, 577, 665
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	2 cut(s)	8, 569
AfiI	CCNNNNNNNGG	2 cut(s)	393, 676
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	142, 367, 635
AhdI	GACNNNNNGTC	1 cut(s)	694
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	3 cut(s)	174, 386, 669
AluBI	AGCT	9 cut(s)	40, 92, 107, 233, 409, 538, 586, 616, 638
AluI	AGCT	9 cut(s)	40, 92, 107, 233, 409, 538, 586, 616, 638
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	2 cut(s)	323, 702
AlwI	GGATC	2 cut(s)	212, 507
AoxI	GGCC	2 cut(s)	420, 594
ApeKI	GCWGC	6 cut(s)	37, 64, 67, 107, 179, 233
ApoI	RAATTY	4 cut(s)	170, 378, 577, 665
Asp700I	GAANNNNTTC	2 cut(s)	170, 558
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	588
BauI	CACGAG	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	6 cut(s)	49, 76, 79, 94, 166, 220
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	3 cut(s)	176, 388, 671
BcoDI	GTCTC	2 cut(s)	323, 702
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	41
BglII	AGATCT	2 cut(s)	29, 556
BisI	GCNGC	6 cut(s)	38, 65, 68, 108, 180, 234
BlpI	GCTNAGC	1 cut(s)	587
BlsI	GCNGC	6 cut(s)	39, 66, 69, 109, 181, 235
Bme1390I	CCNGG	3 cut(s)	176, 388, 671
Bme18I	GGWCC	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	694
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	3 cut(s)	176, 388, 671
BmsI	GCATC	2 cut(s)	337, 616
BpiI	GAAGAC	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	10
Bpu10I	CCTNAGC	2 cut(s)	99, 417
Bpu1102I	GCTNAGC	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 676
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	3 cut(s)	176, 388, 671
BseGI	GGATG	3 cut(s)	616, 679, 705
BseLI	CCNNNNNNNGG	2 cut(s)	393, 676
BseMII	CTCAG	7 cut(s)	306, 314, 318, 408, 467, 601, 662
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	6 cut(s)	49, 76, 79, 94, 166, 220
BseYI	CCCAGC	1 cut(s)	229
BshFI	GGCC	2 cut(s)	422, 596
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	686
BsiWI	CGTACG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	393, 676
BsmAI	GTCTC	2 cut(s)	323, 702
BsnI	GGCC	2 cut(s)	422, 596
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	29, 207, 217, 499, 556
Bsp1720I	GCTNAGC	1 cut(s)	587
BspANI	GGCC	2 cut(s)	422, 596
BspCNI	CTCAG	7 cut(s)	305, 313, 319, 409, 468, 600, 661
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	212, 507
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	5 cut(s)	29, 207, 217, 499, 556
BssSI	CACGAG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	3 cut(s)	176, 388, 671
Bst4CI	ACNGT	2 cut(s)	246, 606
Bst6I	CTCTTC	1 cut(s)	614
BstF5I	GGATG	3 cut(s)	616, 679, 705
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	5 cut(s)	32, 210, 220, 502, 559
BstMAI	GTCTC	2 cut(s)	323, 702
BstMBI	GATC	5 cut(s)	29, 207, 217, 499, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 635
BstNI	CCWGG	3 cut(s)	176, 388, 671
BstNSI	RCATGY	2 cut(s)	77, 289
BstSCI	CCNGG	3 cut(s)	174, 386, 669
BstSFI	CTRYAG	1 cut(s)	41
BstV1I	GCAGC	6 cut(s)	49, 76, 79, 94, 166, 220
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	3 cut(s)	29, 499, 556
BstYI	RGATCY	3 cut(s)	29, 499, 556
BsuRI	GGCC	2 cut(s)	422, 596
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	3 cut(s)	616, 679, 705
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	7, 568
CviAII	CATG	5 cut(s)	74, 286, 314, 424, 592
CviQI	GTAC	2 cut(s)	7, 568
DpnI	GATC	5 cut(s)	31, 209, 219, 501, 558
DpnII	GATC	5 cut(s)	29, 207, 217, 499, 556
DraI	TTTAAA	1 cut(s)	124
DriI	GACNNNNNGTC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	614
Eam1105I	GACNNNNNGTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	614
Ecl136II	GAGCTC	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	588
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	638
EcoICRI	GAGCTC	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	665
EcoRII	CCWGG	3 cut(s)	174, 386, 669
EcoRV	GATATC	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	588
FaeI	CATG	5 cut(s)	77, 289, 317, 427, 595
FaiI	YATR	9 cut(s)	75, 249, 287, 315, 358, 425, 461, 593, 641
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 543, 575
FatI	CATG	5 cut(s)	73, 285, 313, 423, 591
Fnu4HI	GCNGC	6 cut(s)	38, 65, 68, 108, 180, 234
FokI	GGATG	3 cut(s)	623, 686, 692
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	6 cut(s)	38, 65, 68, 108, 180, 234
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	6 cut(s)	38, 65, 68, 108, 180, 234
GsaI	CCCAGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	422, 596
HapII	CCGG	1 cut(s)	686
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	5 cut(s)	77, 289, 317, 427, 595
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	296, 331, 644
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	89, 295, 651
Hpy188III	TCNNGA	8 cut(s)	27, 163, 221, 335, 344, 451, 475, 701
HpyAV	CCTTC	3 cut(s)	136, 448, 652
HpyCH4III	ACNGT	2 cut(s)	246, 606
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	5 cut(s)	64, 251, 356, 373, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 635
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	5 cut(s)	77, 289, 317, 427, 595
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	29, 207, 217, 499, 556
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	6 cut(s)	49, 76, 79, 94, 166, 220
LweI	GCATC	2 cut(s)	337, 616
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	2 cut(s)	482, 710
MalI	GATC	5 cut(s)	31, 209, 219, 501, 558
MboI	GATC	5 cut(s)	29, 207, 217, 499, 556
MboII	GAAGA	5 cut(s)	274, 551, 566, 584, 631
MflI	RGATCY	3 cut(s)	29, 499, 556
MhlI	GDGCHC	1 cut(s)	588
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	4 cut(s)	170, 378, 577, 665
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	140, 588
MnlI	CCTC	7 cut(s)	217, 384, 412, 427, 480, 655, 670
Mox20I	TGGCCA	1 cut(s)	596
MroXI	GAANNNNTTC	2 cut(s)	170, 558
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	2 cut(s)	123, 309
Msp20I	TGGCCA	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	3 cut(s)	176, 388, 671
MvaI	CCWGG	3 cut(s)	176, 388, 671
MwoI	GCNNNNNNNGC	2 cut(s)	104, 635
NdeII	GATC	5 cut(s)	29, 207, 217, 499, 556
NlaIII	CATG	5 cut(s)	77, 289, 317, 427, 595
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	2 cut(s)	77, 289
PciI	ACATGT	1 cut(s)	285
PdmI	GAANNNNTTC	2 cut(s)	170, 558
PfeI	GAWTC	2 cut(s)	296, 644
Pfl23II	CGTACG	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	6 cut(s)	39, 66, 69, 109, 181, 235
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	226
PscI	ACATGT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	3 cut(s)	174, 386, 669
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	3 cut(s)	174, 386, 669
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	3 cut(s)	29, 499, 556
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	8, 569
RsaNI	GTAC	2 cut(s)	7, 568
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	123, 309
SatI	GCNGC	6 cut(s)	38, 65, 68, 108, 180, 234
Sau3AI	GATC	5 cut(s)	29, 207, 217, 499, 556
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	176, 388, 671
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	2 cut(s)	337, 616
SfcI	CTRYAG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	170, 378, 577, 665
SspMI	CTAG	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	3 cut(s)	174, 386, 669
TaaI	ACNGT	2 cut(s)	246, 606
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	2 cut(s)	432, 450
TasI	AATT	4 cut(s)	170, 378, 577, 665
TfiI	GAWTC	2 cut(s)	296, 644
Tru1I	TTAA	2 cut(s)	123, 309
Tru9I	TTAA	2 cut(s)	123, 309
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	6 cut(s)	37, 64, 67, 107, 179, 233
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	275, 706
TspGWI	ACGGA	2 cut(s)	185, 698
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	4 cut(s)	170, 378, 577, 665
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	2 cut(s)	77, 289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmnI	GAANNNNTTC	2 cut(s)	170, 558
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.