Rorug02G0211500

ATP synthase 24 kDa subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010249
Physical Location & Seq
Reverse (-)
19912176 .. 19914056
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0211500.1

Sequence Viewer

Length: 588 bp
ATGGTGGTGAACGACGGCGACGTCTGGGTTCCTCGAGTTGTAGGAGGCGAGAAGGATGACATCCCTGATTATGAACTTGGATTGTTTGAAGCATTGACAATGTCAACATCATACCTCCCAGCAACAACGGATTCAATTGCTCTGGCTTTAGAGGCCAAAGCTCCATCTGAAGCCATAGCTATTCTGTATCGTATTCTTGAAAACCCATCCACTTCTTCCGAAGCTCTATGCATAAAGGAACAGGCCATCACCAATCTGTCAGATCTTCTTAGACAAGAGAATCGGGGAGAAGATCTTCGGCACAATATGAAGACATGTCAGAGGCATTTGCCACCAAAGGAAAAGAAGACTGCTGCTGTTTCTAGGAAGAGGAAGGTCAGCAGTGAAGACGGCCAAGGTTCTGAAAATCAGTTCAAGAAAGGGAAAAAGTGTCCTTTGACTGCAAATCAGTTGAGGATCAAAGCCAAAGAAAGAGCCGAGTATCAAAGGAAAAAGCTTGCTGCTGCCAAGGCTGCAAAGTTGGCAGCAAACAGGTCTGCCCACACAACCTTGATTAGAGCTAAATTAATGTCAACCTTGAACTACTGA

Protein Analysis

195

Amino Acids

21.61

Weight (kDa)

9.47

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN6_N PF18055 49 - 113 5.3e-06 26S proteasome regulatory subunit RPN6 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21870 AT2G21870
fragaria_vesca FvH4_1g22890
malus_domestica MD01G1021000.v1.1 MD15G1331100.v1.1
prunus_persica Prupe.6G169300_v2.0.a1
pyrus_communis pycom01g05060 pycom15g29410
rosa_chinensis RchiOBHm_Chr2g0117231
rosa_laevigata RLG00000018337
rosa_multiflora Rmu_co8431947.1_g000001
rosa_roxburghii Rroxscaffold_2G00126620
rosa_rugosa Rorug02G0211500
rosa_samantha Rh2AG267100 Rh2AG268800 Rh2BG279400 Rh2DG274000 Rh2DG275900 Rh2DG293400
rosa_wichuraiana Rw2G021080 Rw2G021130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AatII GACGTC 1 cut(s) 24
AclWI GGATC 1 cut(s) 464
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 5 cut(s) 89, 135, 200, 415, 580
AluBI AGCT 5 cut(s) 161, 179, 224, 496, 560
AluI AGCT 5 cut(s) 161, 179, 224, 496, 560
AlwI GGATC 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 3 cut(s) 153, 243, 391
ApeKI GCWGC 5 cut(s) 353, 500, 503, 512, 524
AseI ATTAAT 1 cut(s) 566
Asp700I GAANNNNTTC 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 19, 241
AvaI CYCGRG 1 cut(s) 33
BbsI GAAGAC 3 cut(s) 317, 353, 393
BbvI GCAGC 5 cut(s) 340, 487, 490, 499, 536
BccI CCATC 3 cut(s) 172, 214, 254
BceAI ACGGC 2 cut(s) 31, 406
BfaI CTAG 1 cut(s) 363
BglII AGATCT 2 cut(s) 262, 292
BisI GCNGC 5 cut(s) 354, 501, 504, 513, 525
BlsI GCNGC 5 cut(s) 355, 502, 505, 514, 526
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 30
BpiI GAAGAC 3 cut(s) 317, 353, 393
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 394, 507
BseDI CCNNGG 2 cut(s) 394, 507
BseGI GGATG 3 cut(s) 60, 61, 206
BseXI GCAGC 5 cut(s) 340, 487, 490, 499, 536
BseYI CCCAGC 1 cut(s) 118
BshFI GGCC 3 cut(s) 155, 245, 393
BsiHKCI CYCGRG 1 cut(s) 33
BsnI GGCC 3 cut(s) 155, 245, 393
BsoBI CYCGRG 1 cut(s) 33
Bsp143I GATC 3 cut(s) 262, 292, 456
BspANI GGCC 3 cut(s) 155, 245, 393
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 464
BssECI CCNNGG 2 cut(s) 394, 507
BssMI GATC 3 cut(s) 262, 292, 456
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 394, 507
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 3 cut(s) 60, 61, 206
BstKTI GATC 3 cut(s) 265, 295, 459
BstMBI GATC 3 cut(s) 262, 292, 456
BstMWI GCNNNNNNNGC 4 cut(s) 152, 509, 512, 521
BstNSI RCATGY 1 cut(s) 318
BstV1I GCAGC 5 cut(s) 340, 487, 490, 499, 536
BstV2I GAAGAC 3 cut(s) 317, 353, 393
BstX2I RGATCY 2 cut(s) 262, 292
BstYI RGATCY 2 cut(s) 262, 292
BsuRI GGCC 3 cut(s) 155, 245, 393
BtsCI GGATG 3 cut(s) 60, 61, 206
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 498
CviAII CATG 1 cut(s) 315
DdeI CTNAG 1 cut(s) 269
DpnI GATC 3 cut(s) 264, 294, 458
DpnII GATC 3 cut(s) 262, 292, 456
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco130I CCWWGG 2 cut(s) 394, 507
Eco57I CTGAAG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 394, 507
EcoT22I ATGCAT 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 394, 507
FaeI CATG 1 cut(s) 318
FaiI YATR 7 cut(s) 72, 112, 176, 229, 233, 308, 316
FatI CATG 1 cut(s) 314
Fnu4HI GCNGC 5 cut(s) 354, 501, 504, 513, 525
FokI GGATG 3 cut(s) 47, 68, 193
Fsp4HI GCNGC 5 cut(s) 354, 501, 504, 513, 525
FspBI CTAG 1 cut(s) 363
GluI GCNGC 5 cut(s) 354, 501, 504, 513, 525
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 3 cut(s) 155, 245, 393
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 318
HincII GTYRAC 2 cut(s) 105, 573
HindII GTYRAC 2 cut(s) 105, 573
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 2 cut(s) 131, 280
HphI GGTGA 2 cut(s) 19, 241
Hpy166II GTNNAC 3 cut(s) 10, 105, 573
Hpy188I TCNGA 5 cut(s) 169, 220, 262, 321, 403
Hpy188III TCNNGA 2 cut(s) 197, 415
Hpy8I GTNNAC 3 cut(s) 10, 105, 573
Hpy99I CGWCG 2 cut(s) 17, 23
HpyAV CCTTC 2 cut(s) 46, 367
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 231, 443, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 509, 512, 521
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 318
Kzo9I GATC 3 cut(s) 262, 292, 456
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 6 cut(s) 10, 78, 128, 132, 227, 517
Lsp1109I GCAGC 5 cut(s) 340, 487, 490, 499, 536
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 21
MalI GATC 3 cut(s) 264, 294, 458
MboI GATC 3 cut(s) 262, 292, 456
MboII GAAGA 8 cut(s) 207, 257, 287, 302, 322, 358, 379, 398
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 262, 292
MluCI AATT 2 cut(s) 135, 563
MnlI CCTC 7 cut(s) 38, 42, 125, 145, 315, 363, 447
Mph1103I ATGCAT 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 1 cut(s) 566
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 4 cut(s) 152, 509, 512, 521
NdeII GATC 3 cut(s) 262, 292, 456
NlaIII CATG 1 cut(s) 318
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 502
NsiI ATGCAT 1 cut(s) 233
NspI RCATGY 1 cut(s) 318
PaeR7I CTCGAG 1 cut(s) 33
PciI ACATGT 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 131, 280
PflFI GACNNNGTC 1 cut(s) 100
PkrI GCNGC 5 cut(s) 355, 502, 505, 514, 526
PscI ACATGT 1 cut(s) 314
PshBI ATTAAT 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 30
PspXI VCTCGAGB 1 cut(s) 33
PsuI RGATCY 2 cut(s) 262, 292
PsyI GACNNNGTC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 5 cut(s) 354, 501, 504, 513, 525
Sau3AI GATC 3 cut(s) 262, 292, 456
Sfr274I CTCGAG 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 2 cut(s) 135, 563
SspMI CTAG 1 cut(s) 363
StyI CCWWGG 2 cut(s) 394, 507
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 34
TasI AATT 2 cut(s) 135, 563
TfiI GAWTC 2 cut(s) 131, 280
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 388
TseI GCWGC 5 cut(s) 353, 500, 503, 512, 524
TspDTI ATGAA 2 cut(s) 87, 323
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 100
VspI ATTAAT 1 cut(s) 566
XceI RCATGY 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 1 cut(s) 363
ZraI GACGTC 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.