Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010249

Physical Location & Seq

Genomic Coordinates Forward (+)

14817798 .. 14821697

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCCTTCTCTTCCCGTCTCTTATCCAAGTCCAGACAGCTGTGCAGCAATGGAGTCGTTCTTCAACAGGAGCGTCTCATTCCGGTTCGGCACTTTGCCAAGGAAGCGAATCGCCCGGTGCTTAAGGGTGACGAGATGCTGAAGAACATCTTCCTGGAGGTTAAGAACAAGTTCGAGACCGCCCTTGGAGTACTGCGCCAAGAGAAGATCACTATTGACCCCAATGATCCGGCTGCAGTGTCTCAATATGCCAAAGTCATGAAAACTATCCGAGAGAAGGCGGATCTGTTCTCGGAATCCCAACGTATAGCATTTACCATCGAAAGCCGTACGAAAGATATCCCAGATGCTAGAACTTATCTGTTGACATTGAAGGAAATCAGGATCAAGAGAGGTCTCACTGATGAACTCGGTGCAGAGGGTATGATGATGGATGCACTGGAGAAAGTTGAAAAGGAACTGAAGAAACCTCTTTTGAGGAAAGATGACAAAGGAATGGCTCTTCTCACGGCAGAATTTGATAAAATAAACAAAAAGCTTGGAATTCGTTATGAAGATTTACCAAAGTATGAAGAACAACTAGAACTCAAGAAAGCCAAAGCACAACTGCAGGAACTTGAGAAAGAGGCTTTCGAGGCGATGGACACTCAGGCAAAGAGGGAGGAATTCAAAGATGAGGCAATGGTCGAGGTAAAGTCTTTGGATATCCGAAACTTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0007275 GO:0008150 GO:0008270 GO:0009507 GO:0009536 GO:0009555 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0048229 GO:0048856 GO:0050897 GO:0070013 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mt_ATP_synt

Protein Analysis

241

Amino Acids

27.72

Weight (kDa)

8.71

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mt_ATP_synt	PF15704	33 - 219	7e-79	Mitochondrial ATP synthase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21870 AT2G21870
fragaria_vesca	FvH4_1g22890
malus_domestica	MD01G1021000.v1.1 MD15G1331100.v1.1
prunus_persica	Prupe.6G169300_v2.0.a1
pyrus_communis	pycom01g05060 pycom15g29410
rosa_chinensis	RchiOBHm_Chr2g0117231
rosa_laevigata	RLG00000018337
rosa_multiflora	Rmu_co8431947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126620
rosa_rugosa	Rorug02G0211500
rosa_samantha	Rh2AG267100 Rh2AG268800 Rh2BG279400 Rh2DG274000 Rh2DG275900 Rh2DG293400
rosa_wichuraiana	Rw2G021080 Rw2G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	180, 281
AclWI	GGATC	3 cut(s)	221, 291, 392
AcsI	RAATTY	3 cut(s)	515, 543, 665
AcuI	CTGAAG	2 cut(s)	161, 482
AfaI	GTAC	2 cut(s)	192, 331
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	65, 373, 452, 670
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	40, 538
AluI	AGCT	2 cut(s)	40, 538
Alw26I	GTCTC	5 cut(s)	23, 80, 170, 246, 401
AlwI	GGATC	3 cut(s)	221, 291, 392
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	45, 233
ApoI	RAATTY	3 cut(s)	515, 543, 665
Asp700I	GAANNNNTTC	2 cut(s)	149, 170
AspLEI	GCGC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	57, 220
BccI	CCATC	3 cut(s)	326, 424, 634
BceAI	ACGGC	2 cut(s)	312, 525
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	5 cut(s)	23, 80, 170, 246, 401
BfaI	CTAG	2 cut(s)	351, 581
BfmI	CTRYAG	2 cut(s)	234, 608
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	2 cut(s)	46, 234
BlsI	GCNGC	2 cut(s)	47, 235
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	2 cut(s)	116, 155
BmrFI	CCNGG	2 cut(s)	116, 155
BmsI	GCATC	3 cut(s)	126, 337, 424
BpmI	CTGGAG	2 cut(s)	176, 461
BpuEI	CTTGAG	2 cut(s)	572, 638
BpuMI	CCSGG	1 cut(s)	116
BsaI	GGTCTC	2 cut(s)	170, 401
BsaJI	CCNNGG	2 cut(s)	99, 184
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	444
Bse3DI	GCAATG	2 cut(s)	55, 687
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	99, 184
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	2 cut(s)	55, 687
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	57, 220
BsgI	GTGCAG	2 cut(s)	64, 435
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	83, 116, 230
BsiWI	CGTACG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	5 cut(s)	23, 80, 170, 246, 401
BsmBI	CGTCTC	2 cut(s)	23, 80
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	170, 401
Bsp143I	GATC	4 cut(s)	207, 226, 283, 384
BspACI	CCGC	2 cut(s)	180, 281
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	661
BspHI	TCATGA	1 cut(s)	258
BspMAI	CTGCAG	2 cut(s)	238, 612
BspPI	GGATC	3 cut(s)	221, 291, 392
BspQI	GCTCTTC	1 cut(s)	507
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	2 cut(s)	170, 401
BsrDI	GCAATG	2 cut(s)	55, 687
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	99, 184
BssMI	GATC	4 cut(s)	207, 226, 283, 384
BssT1I	CCWWGG	2 cut(s)	99, 184
Bst2UI	CCWGG	1 cut(s)	155
Bst6I	CTCTTC	2 cut(s)	16, 507
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	648
BstF5I	GGATG	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	4 cut(s)	210, 229, 286, 387
BstMAI	GTCTC	5 cut(s)	23, 80, 170, 246, 401
BstMBI	GATC	4 cut(s)	207, 226, 283, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 635
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	114, 153
BstSFI	CTRYAG	2 cut(s)	234, 608
BstV1I	GCAGC	2 cut(s)	57, 220
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	243, 399, 437
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	198
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	191, 330
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	8 cut(s)	5, 40, 233, 327, 500, 538, 596, 629
CviKI_1	RGCY	8 cut(s)	5, 40, 233, 327, 500, 538, 596, 629
CviQI	GTAC	2 cut(s)	191, 330
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	4 cut(s)	209, 228, 285, 386
DpnII	GATC	4 cut(s)	207, 226, 283, 384
Eam1104I	CTCTTC	2 cut(s)	16, 507
EarI	CTCTTC	2 cut(s)	16, 507
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	99, 184
Eco31I	GGTCTC	2 cut(s)	170, 401
Eco32I	GATATC	2 cut(s)	340, 706
Eco57I	CTGAAG	2 cut(s)	161, 482
EcoRI	GAATTC	2 cut(s)	543, 665
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	2 cut(s)	340, 706
EcoT14I	CCWWGG	2 cut(s)	99, 184
ErhI	CCWWGG	2 cut(s)	99, 184
Esp3I	CGTCTC	2 cut(s)	23, 80
FaeI	CATG	1 cut(s)	262
FaiI	YATR	6 cut(s)	249, 260, 308, 425, 552, 570
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	46, 234
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	2 cut(s)	46, 234
FspBI	CTAG	2 cut(s)	351, 581
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	2 cut(s)	46, 234
GsuI	CTGGAG	2 cut(s)	176, 461
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	83, 116, 230
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	54, 109, 296
HpaII	CCGG	3 cut(s)	83, 116, 230
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	4 cut(s)	272, 295, 710, 722
Hpy188III	TCNNGA	6 cut(s)	33, 175, 259, 382, 388, 589
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	16, 271, 367
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	5 cut(s)	45, 236, 416, 437, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 635
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	207, 226, 283, 384
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	2 cut(s)	57, 220
LweI	GCATC	3 cut(s)	126, 337, 424
MaeI	CTAG	2 cut(s)	351, 581
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	4 cut(s)	209, 228, 285, 386
MboI	GATC	4 cut(s)	207, 226, 283, 384
MboII	GAAGA	9 cut(s)	3, 53, 142, 154, 217, 475, 494, 566, 584
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	3 cut(s)	515, 543, 665
MlyI	GAGTC	1 cut(s)	63
MroXI	GAANNNNTTC	2 cut(s)	149, 170
MseI	TTAA	2 cut(s)	123, 162
MspA1I	CMGCKG	1 cut(s)	40
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	3 cut(s)	83, 116, 230
MspR9I	CCNGG	2 cut(s)	116, 155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	104, 635
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	4 cut(s)	207, 226, 283, 384
NlaIII	CATG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	128
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	507
PdmI	GAANNNNTTC	2 cut(s)	149, 170
PfeI	GAWTC	2 cut(s)	109, 296
Pfl23II	CGTACG	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	47, 235
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspLI	CGTACG	1 cut(s)	329
PstI	CTGCAG	2 cut(s)	238, 612
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	2 cut(s)	192, 331
RsaNI	GTAC	2 cut(s)	191, 330
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	123, 162
SatI	GCNGC	2 cut(s)	46, 234
Sau3AI	GATC	4 cut(s)	207, 226, 283, 384
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	116, 155
SetI	ASST	7 cut(s)	42, 162, 307, 397, 472, 540, 693
SfaNI	GCATC	3 cut(s)	126, 337, 424
SfcI	CTRYAG	2 cut(s)	234, 608
SmlI	CTYRAG	3 cut(s)	122, 587, 617
SmoI	CTYRAG	3 cut(s)	122, 587, 617
Sse9I	AATT	3 cut(s)	515, 543, 665
SsiI	CCGC	2 cut(s)	180, 281
SspMI	CTAG	2 cut(s)	351, 581
StyD4I	CCNGG	2 cut(s)	114, 153
StyI	CCWWGG	2 cut(s)	99, 184
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	4 cut(s)	174, 321, 633, 687
TasI	AATT	3 cut(s)	515, 543, 665
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	109, 296
Tru1I	TTAA	2 cut(s)	123, 162
Tru9I	TTAA	2 cut(s)	123, 162
TscAI	CASTG	3 cut(s)	243, 406, 444
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	45, 233
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	5 cut(s)	275, 420, 567, 585, 706
TspRI	CASTG	3 cut(s)	243, 406, 444
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	3 cut(s)	515, 543, 665
XmnI	GAANNNNTTC	2 cut(s)	149, 170
XspI	CTAG	2 cut(s)	351, 581
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.