Rw2G021130

ATP synthase 24 kDa subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010249
Physical Location & Seq
Forward (+)
29123653 .. 29132348
8696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021130.1

Sequence Viewer

Length: 405 bp
ATGCATCATGAATCCTGTAGGGCGGATTTGTTCTCGGAATCCCAACGTATCCAACACACCATCAAAACCCGTACACAAGATATCCCAGATGCCAGAACTTATCTGTTGACATTGAAGGAAATTAGGATCAGGAGAGGTCTCACTGATGAACTCGGTGCAGAGGCTGTGATGATGGATGCATTGGAGAAAGTTGAAAAGGAACTGAAGAAACCTCTTTTGAGGAATGATAAGAAAGGAATGGCTCTTCTCTTGGCAGAGTTTGACAAAGTAAACCCGAAGCTTGGAATTCGGAAGGAAGATTTACCAAAGTATGAAGAACAACTAGAACTCAAGAAAGCTGAAGCAAAACTGGAGGAACTTGAGAAGGAGGCTCTTGAGGCAATGGAAACTCAGGCAAAGTGGTAA

Protein Analysis

134

Amino Acids

15.63

Weight (kDa)

6.0

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mt_ATP_synt PF15704 7 - 133 4.8e-52 Mitochondrial ATP synthase subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21870 AT2G21870
fragaria_vesca FvH4_1g22890
malus_domestica MD01G1021000.v1.1 MD15G1331100.v1.1
prunus_persica Prupe.6G169300_v2.0.a1
pyrus_communis pycom01g05060 pycom15g29410
rosa_chinensis RchiOBHm_Chr2g0117231
rosa_laevigata RLG00000018337
rosa_multiflora Rmu_co8431947.1_g000001
rosa_roxburghii Rroxscaffold_2G00126620
rosa_rugosa Rorug02G0211500
rosa_samantha Rh2AG267100 Rh2AG268800 Rh2BG279400 Rh2DG274000 Rh2DG275900 Rh2DG293400
rosa_wichuraiana Rw2G021080 Rw2G021130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 2 cut(s) 224, 360
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 115, 194
AluBI AGCT 2 cut(s) 280, 338
AluI AGCT 2 cut(s) 280, 338
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 134
AlwNI CAGNNNCTG 1 cut(s) 164
ApoI RAATTY 1 cut(s) 285
BccI CCATC 2 cut(s) 68, 166
BciVI GTATCC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 16
BfuI GTATCC 1 cut(s) 59
BmsI GCATC 3 cut(s) 13, 79, 166
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 3 cut(s) 314, 380, 395
BsaI GGTCTC 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 387
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 403
BspHI TCATGA 1 cut(s) 7
BspPI GGATC 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 354
BssMI GATC 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 16
BsuI GTATCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 164
CciI TCATGA 1 cut(s) 7
Csp6I GTAC 1 cut(s) 72
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 164, 242, 280, 338, 371
CviKI_1 RGCY 5 cut(s) 164, 242, 280, 338, 371
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 1 cut(s) 390
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 82
Eco57I CTGAAG 2 cut(s) 224, 360
EcoRI GAATTC 1 cut(s) 285
EcoRV GATATC 1 cut(s) 82
EcoT22I ATGCAT 2 cut(s) 6, 181
FaeI CATG 1 cut(s) 11
FaiI YATR 2 cut(s) 9, 312
FatI CATG 1 cut(s) 7
FokI GGATG 1 cut(s) 188
FspBI CTAG 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 371
Hin1II CATG 1 cut(s) 11
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 11, 38
Hpy166II GTNNAC 3 cut(s) 74, 108, 271
Hpy188I TCNGA 2 cut(s) 37, 291
Hpy188III TCNNGA 4 cut(s) 8, 130, 331, 374
Hpy8I GTNNAC 3 cut(s) 74, 108, 271
HpyAV CCTTC 3 cut(s) 109, 286, 358
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 4, 158, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 28, 99, 106, 115, 335, 377
LweI GCATC 3 cut(s) 13, 79, 166
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 46
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 4 cut(s) 217, 236, 308, 326
MluCI AATT 2 cut(s) 120, 285
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 7 cut(s) 128, 154, 213, 222, 346, 361, 370
Mph1103I ATGCAT 2 cut(s) 6, 181
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 11
NsiI ATGCAT 2 cut(s) 6, 181
PagI TCATGA 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 11, 38
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 126
SetI ASST 5 cut(s) 49, 139, 214, 282, 340
SfaNI GCATC 3 cut(s) 13, 79, 166
SfcI CTRYAG 1 cut(s) 16
SmlI CTYRAG 3 cut(s) 329, 359, 374
SmoI CTYRAG 3 cut(s) 329, 359, 374
Sse9I AATT 2 cut(s) 120, 285
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 323
TaiI ACGT 1 cut(s) 49
TasI AATT 2 cut(s) 120, 285
TfiI GAWTC 2 cut(s) 11, 38
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 24, 162, 327
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 285
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 2 cut(s) 6, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.