Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010249

Physical Location & Seq

Genomic Coordinates Reverse (-)

30785180 .. 30795455

Gene Structure 10276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG275900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCTGCTACAGTTTATGGGGGAAGTGACTGGTAGGAGAGGACTCACTGATGAACTCGGTGCAGAGGCTATGATGATGGATGCATTGGAGAAAGTTGAAAAGGAACTGAAGAAATCTCTTTTGAGGAATTATAAGAAAGGAATGGCTCTTCTCTTGGCAGAGTTTGACAAAGTAAACCAGAAGCTTGGAATTCGGAAGGAAGATTTACCAAAGTATGAAGAACAACTAGAACTCAAGAAAGCTAAAGCACAACTGGAGGAACTTGAGAAGGAGGCTCTTGAGGCAATGGAAACTCAGGAAAAGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0007275 GO:0008150 GO:0008270 GO:0009507 GO:0009536 GO:0009555 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0048229 GO:0048856 GO:0050897 GO:0070013 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mt_ATP_synt

Protein Analysis

102

Amino Acids

11.83

Weight (kDa)

5.39

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mt_ATP_synt	PF15704	5 - 101	1.8e-35	Mitochondrial ATP synthase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21870 AT2G21870
fragaria_vesca	FvH4_1g22890
malus_domestica	MD01G1021000.v1.1 MD15G1331100.v1.1
prunus_persica	Prupe.6G169300_v2.0.a1
pyrus_communis	pycom01g05060 pycom15g29410
rosa_chinensis	RchiOBHm_Chr2g0117231
rosa_laevigata	RLG00000018337
rosa_multiflora	Rmu_co8431947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126620
rosa_rugosa	Rorug02G0211500
rosa_samantha	Rh2AG267100 Rh2AG268800 Rh2BG279400 Rh2DG274000 Rh2DG275900 Rh2DG293400
rosa_wichuraiana	Rw2G021080 Rw2G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AciI	CCGC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	2 cut(s)	184, 242
AluI	AGCT	2 cut(s)	184, 242
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	189
BccI	CCATC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	275
BpuEI	CTTGAG	3 cut(s)	218, 284, 299
Bse1I	ACTGG	2 cut(s)	34, 258
Bse3DI	GCAATG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	34, 258
BsgI	GTGCAG	1 cut(s)	81
BspACI	CCGC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	34, 258
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	45
CviJI	RGCY	5 cut(s)	68, 146, 184, 242, 275
CviKI_1	RGCY	5 cut(s)	68, 146, 184, 242, 275
DdeI	CTNAG	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	85
FaiI	YATR	4 cut(s)	17, 71, 132, 216
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	235, 278, 296
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	190, 262
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	62, 83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	294
LguI	GCTCTTC	1 cut(s)	153
LpnPI	CCDG	4 cut(s)	15, 191, 239, 281
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	4 cut(s)	121, 140, 212, 230
MluCI	AATT	2 cut(s)	127, 189
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	32, 58, 117, 250, 265, 274
Mph1103I	ATGCAT	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PsiI	TTATAA	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	36
SetI	ASST	2 cut(s)	186, 244
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	8
SmlI	CTYRAG	3 cut(s)	233, 263, 278
SmoI	CTYRAG	3 cut(s)	233, 263, 278
Sse9I	AATT	2 cut(s)	127, 189
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	12
TasI	AATT	2 cut(s)	127, 189
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	66, 231
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	189
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.