Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010249

Physical Location & Seq

Genomic Coordinates Reverse (-)

4580465 .. 4584367

Gene Structure 3903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTAAAAAGAAATTTGATACAGCCCTTGGAATACTCCGCAAAGAGAAGATCGACCATTCACCCAGAGGATCCAGCTGCTGTTTCTCAGTACGCCAAGGTCATGAAAACCATAAGAGAGAAGGCAGATTTGTTTTCAGAATCCCAGCGCATCAAACACACCATTCAAAGCCGAACACAAGATATCCCAGATGCTAGAACATATCTGTTGACATTGAAAGAAATTAGGATCAAGAGAGGTCTTACTGATGAACTTGGTGCAGAGGCTATGATGATGGATGCATTGGAGAAAGTCGAAAAGGAACTGAAGAAACCTCTTTTGAGGAACGATAAAAAAGGGATGGCTGTTCTCATGGCAGAATTTGAGAAAATAAACCAAAAGCTTGGAATTCGTAAGGAGGACCTACCAAAGTACGAAGAACAGCTAGAACTCAAGAAAGCCAAAGCACAGCTGGAGGAACTTAAGAAGGATGCTCTTGAGGCAATGGAAACTCAGAAGAAACGGGAGGAATTCAAGGATGAGGCAATGGCTGATGTGAAGTCGTTAGACATCCGAAACTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0007275 GO:0008150 GO:0008270 GO:0009507 GO:0009536 GO:0009555 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0048229 GO:0048856 GO:0050897 GO:0070013 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mt_ATP_synt

Protein Analysis

189

Amino Acids

21.95

Weight (kDa)

9.17

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mt_ATP_synt	PF15704	8 - 167	9.7e-68	Mitochondrial ATP synthase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21870 AT2G21870
fragaria_vesca	FvH4_1g22890
malus_domestica	MD01G1021000.v1.1 MD15G1331100.v1.1
prunus_persica	Prupe.6G169300_v2.0.a1
pyrus_communis	pycom01g05060 pycom15g29410
rosa_chinensis	RchiOBHm_Chr2g0117231
rosa_laevigata	RLG00000018337
rosa_multiflora	Rmu_co8431947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126620
rosa_rugosa	Rorug02G0211500
rosa_samantha	Rh2AG267100 Rh2AG268800 Rh2BG279400 Rh2DG274000 Rh2DG275900 Rh2DG293400
rosa_wichuraiana	Rw2G021080 Rw2G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	3 cut(s)	65, 78, 236
AcsI	RAATTY	4 cut(s)	13, 359, 387, 509
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	2 cut(s)	92, 413
AflII	CTTAAG	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	167, 217, 514
AluBI	AGCT	4 cut(s)	77, 382, 424, 451
AluI	AGCT	4 cut(s)	77, 382, 424, 451
AlwI	GGATC	3 cut(s)	65, 78, 236
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	4 cut(s)	13, 359, 387, 509
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	400
BamHI	GGATCC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	268, 334
BfaI	CTAG	2 cut(s)	195, 425
BfrI	CTTAAG	1 cut(s)	461
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	4 cut(s)	159, 181, 268, 460
BpmI	CTGGAG	1 cut(s)	473
BpuEI	CTTGAG	2 cut(s)	416, 497
BsaJI	CCNNGG	2 cut(s)	27, 96
Bse3DI	GCAATG	2 cut(s)	489, 531
BseDI	CCNNGG	2 cut(s)	27, 96
BseGI	GGATG	5 cut(s)	283, 345, 475, 523, 549
BseMI	GCAATG	2 cut(s)	489, 531
BseMII	CTCAG	2 cut(s)	101, 506
BseXI	GCAGC	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	50, 70, 228
BspACI	CCGC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	100, 505
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	3 cut(s)	65, 78, 236
BspTI	CTTAAG	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	489, 531
BssECI	CCNNGG	2 cut(s)	27, 96
BssMI	GATC	3 cut(s)	50, 70, 228
BssT1I	CCWWGG	2 cut(s)	27, 96
BstAFI	CTTAAG	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	87, 492
BstF5I	GGATG	5 cut(s)	283, 345, 475, 523, 549
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	3 cut(s)	53, 73, 231
BstMBI	GATC	3 cut(s)	50, 70, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	70
BtsCI	GGATG	5 cut(s)	283, 345, 475, 523, 549
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	91, 412
CviAII	CATG	2 cut(s)	103, 352
CviQI	GTAC	2 cut(s)	91, 412
DdeI	CTNAG	2 cut(s)	87, 492
DpnI	GATC	3 cut(s)	52, 72, 230
DpnII	GATC	3 cut(s)	50, 70, 228
Eco130I	CCWWGG	2 cut(s)	27, 96
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRI	GAATTC	2 cut(s)	387, 509
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	27, 96
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	27, 96
FaeI	CATG	2 cut(s)	106, 355
FaiI	YATR	5 cut(s)	104, 113, 202, 269, 353
FatI	CATG	2 cut(s)	102, 351
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	5 cut(s)	290, 352, 482, 530, 536
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	195, 425
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	473
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	106, 355
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	139, 495, 554
Hpy188III	TCNNGA	4 cut(s)	103, 232, 433, 476
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	2 cut(s)	115, 460
HpyCH4V	TGCA	2 cut(s)	260, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	2 cut(s)	87, 492
Hsp92II	CATG	2 cut(s)	106, 355
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	50, 70, 228
LpnPI	CCDG	5 cut(s)	78, 87, 158, 201, 437
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	4 cut(s)	159, 181, 268, 460
MaeI	CTAG	2 cut(s)	195, 425
MalI	GATC	3 cut(s)	52, 72, 230
MboI	GATC	3 cut(s)	50, 70, 228
MboII	GAAGA	4 cut(s)	60, 319, 428, 508
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	5 cut(s)	13, 222, 359, 387, 509
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	2 cut(s)	5, 462
MspA1I	CMGCKG	2 cut(s)	77, 451
MspCI	CTTAAG	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	3 cut(s)	50, 70, 228
NlaIII	CATG	2 cut(s)	106, 355
NlaIV	GGNNCC	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	283
PagI	TCATGA	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	400
PspPPI	RGGWCCY	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	2 cut(s)	77, 451
RsaI	GTAC	2 cut(s)	92, 413
RsaNI	GTAC	2 cut(s)	91, 412
SaqAI	TTAA	2 cut(s)	5, 462
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	3 cut(s)	50, 70, 228
Sau96I	GGNCC	1 cut(s)	400
SetI	ASST	8 cut(s)	79, 102, 241, 316, 384, 405, 426, 453
SfaNI	GCATC	4 cut(s)	159, 181, 268, 460
SinI	GGWCC	1 cut(s)	400
SmlI	CTYRAG	3 cut(s)	431, 461, 476
SmoI	CTYRAG	3 cut(s)	431, 461, 476
Sse9I	AATT	5 cut(s)	13, 222, 359, 387, 509
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	195, 425
StyI	CCWWGG	2 cut(s)	27, 96
TaqI	TCGA	2 cut(s)	53, 294
TasI	AATT	5 cut(s)	13, 222, 359, 387, 509
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	5, 462
Tru9I	TTAA	2 cut(s)	5, 462
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	119, 264, 550
Vha464I	CTTAAG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	4 cut(s)	13, 359, 387, 509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XspI	CTAG	2 cut(s)	195, 425
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.