Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010249

Physical Location & Seq

Genomic Coordinates Forward (+)

8378190 .. 8383371

Gene Structure 5182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1021000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCCTTCTCTTCCCGCCTCTTATCCAAATCCAGGCAGCTGTGTGGCAATGGATTCATTCTTCAACAGGAGCGCGTTATTCCGGTCCGCTACTTCGTTAAGGAAGCAAGTCGCCCCGTGCTAAAGGGTGATGAGATGCTGAAGAACATCTTCTTGGATGTTAAAAAGAAATTTGAGACAGCCCTTGGAATACTCCGCAAAGAGAAGATCACCATTGACCCAGAGGATCCAGCTGCTGTTTCTCAGTACGCCAAGGTCATGAAAACCATAAGAGAGAAGGCAGATTTGTTTTCAGAATCCCAGCGCATCAAACACACCATTCAAAGCCGAACACAAGATATCCCAGATGCTAGAACATATCTGTTGACATTGAAAGAAATTAGGATCAAGAGAGGTCTTACTGATGAACTTGGTGCAGAGGCTATGATGATGGATGCATTGGAGAAAGTCGAAAAGGAACTGAAGAAACCTCTTTTGAGGAACGATAAAAAAGGGATGGCTGTTCTCATGGCAGAATTTGAGAAAATAAACCAGAAGCTTGGAATTCGTAAGGAGGACCTACCAAAGTACGAAGAACAGCTAGAACTCAAGAAAGCCAAAGCACAGCTGGAGGAACTTAAGAAGGATGCTCTTGAGGCAATGGAAACTCAGAAGAAACGGGAGGAATTCAAGGATGAGGCAATGGTTGATGTGAAGTCGTTAGACATCCGAAACTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0007275 GO:0008150 GO:0008270 GO:0009507 GO:0009536 GO:0009555 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0048229 GO:0048856 GO:0050897 GO:0070013 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mt_ATP_synt

Protein Analysis

241

Amino Acids

27.86

Weight (kDa)

9.3

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mt_ATP_synt	PF15704	34 - 219	1.7e-81	Mitochondrial ATP synthase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21870 AT2G21870
fragaria_vesca	FvH4_1g22890
malus_domestica	MD01G1021000.v1.1 MD15G1331100.v1.1
prunus_persica	Prupe.6G169300_v2.0.a1
pyrus_communis	pycom01g05060 pycom15g29410
rosa_chinensis	RchiOBHm_Chr2g0117231
rosa_laevigata	RLG00000018337
rosa_multiflora	Rmu_co8431947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126620
rosa_rugosa	Rorug02G0211500
rosa_samantha	Rh2AG267100 Rh2AG268800 Rh2BG279400 Rh2DG274000 Rh2DG275900 Rh2DG293400
rosa_wichuraiana	Rw2G021080 Rw2G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	16, 88, 196
AclWI	GGATC	3 cut(s)	221, 234, 392
AcsI	RAATTY	4 cut(s)	170, 515, 543, 665
AcuI	CTGAAG	2 cut(s)	161, 482
AfaI	GTAC	2 cut(s)	248, 569
AfiI	CCNNNNNNNGG	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	4 cut(s)	65, 323, 373, 670
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	5 cut(s)	40, 233, 538, 580, 607
AluI	AGCT	5 cut(s)	40, 233, 538, 580, 607
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	221, 234, 392
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	37, 233
ApoI	RAATTY	4 cut(s)	170, 515, 543, 665
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	75, 306
AspS9I	GGNCC	2 cut(s)	85, 556
AsuHPI	GGTGA	2 cut(s)	140, 202
AvaII	GGWCC	2 cut(s)	85, 556
BamHI	GGATCC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	49, 220
BccI	CCATC	2 cut(s)	424, 490
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	351, 581
BfrI	CTTAAG	1 cut(s)	617
BisI	GCNGC	2 cut(s)	38, 234
BlsI	GCNGC	2 cut(s)	39, 235
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	2 cut(s)	85, 556
BmgT120I	GGNCC	2 cut(s)	85, 556
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	5 cut(s)	126, 315, 337, 424, 616
BpmI	CTGGAG	1 cut(s)	629
BpuEI	CTTGAG	2 cut(s)	572, 653
BsaJI	CCNNGG	2 cut(s)	184, 252
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse3DI	GCAATG	3 cut(s)	55, 645, 687
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	184, 252
BseGI	GGATG	6 cut(s)	163, 439, 501, 631, 679, 705
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMI	GCAATG	3 cut(s)	55, 645, 687
BseMII	CTCAG	2 cut(s)	257, 662
BseXI	GCAGC	2 cut(s)	49, 220
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	207, 226, 384
BspACI	CCGC	3 cut(s)	16, 88, 196
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	256, 661
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	3 cut(s)	221, 234, 392
BspTI	CTTAAG	1 cut(s)	617
BsrDI	GCAATG	3 cut(s)	55, 645, 687
BssECI	CCNNGG	2 cut(s)	184, 252
BssMI	GATC	3 cut(s)	207, 226, 384
BssT1I	CCWWGG	2 cut(s)	184, 252
Bst2UI	CCWGG	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	16
BstAFI	CTTAAG	1 cut(s)	617
BstDEI	CTNAG	2 cut(s)	243, 648
BstF5I	GGATG	6 cut(s)	163, 439, 501, 631, 679, 705
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	75, 306
BstKTI	GATC	3 cut(s)	210, 229, 387
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	207, 226, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	49, 220
BstX2I	RGATCY	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	6 cut(s)	163, 439, 501, 631, 679, 705
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	2 cut(s)	75, 306
Cfr13I	GGNCC	2 cut(s)	85, 556
CpoI	CGGWCCG	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	247, 568
CspI	CGGWCCG	1 cut(s)	85
CviAII	CATG	2 cut(s)	259, 508
CviQI	GTAC	2 cut(s)	247, 568
DdeI	CTNAG	2 cut(s)	243, 648
DpnI	GATC	3 cut(s)	209, 228, 386
DpnII	GATC	3 cut(s)	207, 226, 384
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	184, 252
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	85, 556
Eco57I	CTGAAG	2 cut(s)	161, 482
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRI	GAATTC	2 cut(s)	543, 665
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	184, 252
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	184, 252
FaeI	CATG	2 cut(s)	262, 511
FaiI	YATR	5 cut(s)	260, 269, 358, 425, 509
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	2 cut(s)	258, 507
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	38, 234
FokI	GGATG	6 cut(s)	170, 446, 508, 638, 686, 692
Fsp4HI	GCNGC	2 cut(s)	38, 234
FspBI	CTAG	2 cut(s)	351, 581
GlaI	GCGC	2 cut(s)	74, 305
GluI	GCNGC	2 cut(s)	38, 234
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	2 cut(s)	75, 306
Hin1II	CATG	2 cut(s)	262, 511
Hin6I	GCGC	2 cut(s)	73, 304
HinP1I	GCGC	2 cut(s)	73, 304
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	2 cut(s)	54, 296
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	140, 202
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	3 cut(s)	295, 651, 710
Hpy188III	TCNNGA	4 cut(s)	259, 388, 589, 632
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	16, 271, 616
HpyCH4V	TGCA	2 cut(s)	416, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	2 cut(s)	243, 648
Hsp92II	CATG	2 cut(s)	262, 511
HspAI	GCGC	2 cut(s)	73, 304
Kzo9I	GATC	3 cut(s)	207, 226, 384
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	2 cut(s)	49, 220
LweI	GCATC	5 cut(s)	126, 315, 337, 424, 616
MaeI	CTAG	2 cut(s)	351, 581
MalI	GATC	3 cut(s)	209, 228, 386
MboI	GATC	3 cut(s)	207, 226, 384
MboII	GAAGA	8 cut(s)	3, 53, 142, 154, 217, 475, 584, 664
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	5 cut(s)	170, 378, 515, 543, 665
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	3 cut(s)	99, 162, 618
MspA1I	CMGCKG	3 cut(s)	40, 233, 607
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	635
NdeII	GATC	3 cut(s)	207, 226, 384
NlaIII	CATG	2 cut(s)	262, 511
NlaIV	GGNNCC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	439
PagI	TCATGA	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	54, 296
PkrI	GCNGC	2 cut(s)	39, 235
PpuMI	RGGWCCY	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	85, 556
PspPPI	RGGWCCY	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	226
PvuII	CAGCTG	3 cut(s)	40, 233, 607
RsaI	GTAC	2 cut(s)	248, 569
RsaNI	GTAC	2 cut(s)	247, 568
Rsr2I	CGGWCCG	1 cut(s)	85
RsrII	CGGWCCG	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	99, 162, 618
SatI	GCNGC	2 cut(s)	38, 234
Sau3AI	GATC	3 cut(s)	207, 226, 384
Sau96I	GGNCC	2 cut(s)	85, 556
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	9 cut(s)	42, 235, 258, 397, 472, 540, 561, 582, 609
SfaNI	GCATC	5 cut(s)	126, 315, 337, 424, 616
SinI	GGWCC	2 cut(s)	85, 556
SmlI	CTYRAG	3 cut(s)	587, 617, 632
SmoI	CTYRAG	3 cut(s)	587, 617, 632
Sse9I	AATT	5 cut(s)	170, 378, 515, 543, 665
SsiI	CCGC	3 cut(s)	16, 88, 196
SspMI	CTAG	2 cut(s)	351, 581
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	184, 252
TaqI	TCGA	1 cut(s)	450
TasI	AATT	5 cut(s)	170, 378, 515, 543, 665
TfiI	GAWTC	2 cut(s)	54, 296
Tru1I	TTAA	3 cut(s)	99, 162, 618
Tru9I	TTAA	3 cut(s)	99, 162, 618
TseI	GCWGC	2 cut(s)	37, 233
TspDTI	ATGAA	4 cut(s)	46, 275, 420, 706
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	85, 556
XapI	RAATTY	4 cut(s)	170, 515, 543, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	351, 581
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.