Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010249

Physical Location & Seq

Genomic Coordinates Reverse (-)

17471783 .. 17477197

Gene Structure 5415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCCTTCTCTTCCCGCCTCTTATCCAAATCTAGACCGCTGTGTGGCAATGGAGTCATTCTTCAACAGGAGCGTGTTATTCCAGTCCGTTACTTTGCTAAGGAAGCAAATCGCCCTGTGCTGAAGGGTGATGAGATGCTGAAGAACATCTTCTTGGATGTTAAAAAGAAGTTTGAGACAGCCCTTGGAATACTTCGCAAAGAGAAGATCACCATAGACCCAGAGGATCCAGCCGCCGTTTCTCAGTATGCCAAGGTCATGAAAACTATAAGAGAGAAGGCAGATCTGTTCTCAGAATCTCAACGCATCCAACACACGATCCAAAGCCGAACACAAGATATCCCAGATGCTAGAACATACCTGTTGACTTTGAAAGAAATTAGGATCAAGAGAGGTATCACTGATGAACTTGGTGCAGAGGCTATGATGATGGATGCATTGGAGAAAGTTGAAAACGAACTGAAGAAACCTCTTTTGAGGAATGATAAGAAAGGGATGGCTCTTCTCCAGGCAGAATTTGAGAAAATAAACAAGAAGCTTGGAATTCGGAAGGAGGATCTACCAAAGTATGAAGAACAGCTAGAACTCAAGAAAGCGAAAGCACAGCTGGAGGAACTTAAGAAGGATGCTCTTGAGGCAATGGAAACTCAGAAGAAACGGGAGGAATTCAAAGATGAGGAAATGGTTGATGTGAAGTCTTTGGACATCCGAAACTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0007275 GO:0008150 GO:0008270 GO:0009507 GO:0009536 GO:0009555 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0048229 GO:0048856 GO:0050897 GO:0070013 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mt_ATP_synt

Protein Analysis

241

Amino Acids

27.84

Weight (kDa)

9.13

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21870 AT2G21870
fragaria_vesca	FvH4_1g22890
malus_domestica	MD01G1021000.v1.1 MD15G1331100.v1.1
prunus_persica	Prupe.6G169300_v2.0.a1
pyrus_communis	pycom01g05060 pycom15g29410
rosa_chinensis	RchiOBHm_Chr2g0117231
rosa_laevigata	RLG00000018337
rosa_multiflora	Rmu_co8431947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126620
rosa_rugosa	Rorug02G0211500
rosa_samantha	Rh2AG267100 Rh2AG268800 Rh2BG279400 Rh2DG274000 Rh2DG275900 Rh2DG293400
rosa_wichuraiana	Rw2G021080 Rw2G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	16, 38, 234
AclWI	GGATC	5 cut(s)	221, 234, 313, 392, 564
AcsI	RAATTY	3 cut(s)	515, 543, 665
AcuI	CTGAAG	3 cut(s)	143, 161, 482
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	4 cut(s)	65, 373, 452, 670
AjnI	CCWGG	1 cut(s)	507
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	3 cut(s)	538, 580, 607
AluI	AGCT	3 cut(s)	538, 580, 607
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	5 cut(s)	221, 234, 313, 392, 564
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	3 cut(s)	515, 543, 665
Asp700I	GAANNNNTTC	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	140, 202
BamHI	GGATCC	1 cut(s)	226
BccI	CCATC	2 cut(s)	424, 490
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	3 cut(s)	33, 351, 581
BfrI	CTTAAG	1 cut(s)	617
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	5 cut(s)	126, 315, 337, 424, 616
BpmI	CTGGAG	2 cut(s)	491, 629
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	572, 653
BsaJI	CCNNGG	2 cut(s)	184, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	55, 645
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	2 cut(s)	184, 252
BseGI	GGATG	6 cut(s)	163, 306, 439, 501, 631, 705
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	2 cut(s)	55, 645
BseMII	CTCAG	3 cut(s)	257, 306, 662
BseNI	ACTGG	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	6 cut(s)	207, 226, 283, 318, 384, 556
BspACI	CCGC	3 cut(s)	16, 38, 234
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	256, 305, 661
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	5 cut(s)	221, 234, 313, 392, 564
BspQI	GCTCTTC	1 cut(s)	507
BspTI	CTTAAG	1 cut(s)	617
BsrDI	GCAATG	2 cut(s)	55, 645
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	184, 252
BssMI	GATC	6 cut(s)	207, 226, 283, 318, 384, 556
BssT1I	CCWWGG	2 cut(s)	184, 252
Bst2UI	CCWGG	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	16, 507
BstAFI	CTTAAG	1 cut(s)	617
BstDEI	CTNAG	4 cut(s)	99, 243, 292, 648
BstF5I	GGATG	6 cut(s)	163, 306, 439, 501, 631, 705
BstKTI	GATC	6 cut(s)	210, 229, 286, 321, 387, 559
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	6 cut(s)	207, 226, 283, 318, 384, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 635
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstX2I	RGATCY	3 cut(s)	226, 283, 556
BstYI	RGATCY	3 cut(s)	226, 283, 556
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	6 cut(s)	163, 306, 439, 501, 631, 705
BtsIMutI	CAGTG	1 cut(s)	399
CciI	TCATGA	1 cut(s)	258
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	9 cut(s)	5, 182, 233, 327, 422, 500, 538, 580, 607
CviKI_1	RGCY	9 cut(s)	5, 182, 233, 327, 422, 500, 538, 580, 607
DdeI	CTNAG	4 cut(s)	99, 243, 292, 648
DpnI	GATC	6 cut(s)	209, 228, 285, 320, 386, 558
DpnII	GATC	6 cut(s)	207, 226, 283, 318, 384, 556
Eam1104I	CTCTTC	2 cut(s)	16, 507
EarI	CTCTTC	2 cut(s)	16, 507
Eco130I	CCWWGG	2 cut(s)	184, 252
Eco32I	GATATC	1 cut(s)	340
Eco57I	CTGAAG	3 cut(s)	143, 161, 482
EcoRI	GAATTC	2 cut(s)	543, 665
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	184, 252
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	184, 252
FaeI	CATG	1 cut(s)	262
FaiI	YATR	7 cut(s)	215, 249, 260, 269, 358, 425, 570
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	6 cut(s)	170, 293, 446, 508, 638, 692
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	3 cut(s)	33, 351, 581
GluI	GCNGC	1 cut(s)	234
GsuI	CTGGAG	2 cut(s)	491, 629
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	2 cut(s)	54, 296
HphI	GGTGA	2 cut(s)	140, 202
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	4 cut(s)	295, 549, 651, 710
Hpy188III	TCNNGA	5 cut(s)	33, 259, 388, 589, 632
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	5 cut(s)	16, 118, 271, 544, 616
HpyCH4V	TGCA	2 cut(s)	416, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 635
HpyF3I	CTNAG	4 cut(s)	99, 243, 292, 648
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	6 cut(s)	207, 226, 283, 318, 384, 556
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	70
LweI	GCATC	5 cut(s)	126, 315, 337, 424, 616
MaeI	CTAG	3 cut(s)	33, 351, 581
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	6 cut(s)	209, 228, 285, 320, 386, 558
MboI	GATC	6 cut(s)	207, 226, 283, 318, 384, 556
MboII	GAAGA	9 cut(s)	3, 53, 142, 154, 217, 475, 494, 584, 664
MflI	RGATCY	3 cut(s)	226, 283, 556
MluCI	AATT	4 cut(s)	378, 515, 543, 665
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	334
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	2 cut(s)	162, 618
MspA1I	CMGCKG	2 cut(s)	40, 607
MspCI	CTTAAG	1 cut(s)	617
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	104, 635
NdeII	GATC	6 cut(s)	207, 226, 283, 318, 384, 556
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	439
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	228
PsuI	RGATCY	3 cut(s)	226, 283, 556
PvuII	CAGCTG	1 cut(s)	607
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	162, 618
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	6 cut(s)	207, 226, 283, 318, 384, 556
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	509
SetI	ASST	7 cut(s)	258, 363, 397, 472, 540, 582, 609
SfaNI	GCATC	5 cut(s)	126, 315, 337, 424, 616
SmlI	CTYRAG	3 cut(s)	587, 617, 632
SmoI	CTYRAG	3 cut(s)	587, 617, 632
Sse9I	AATT	4 cut(s)	378, 515, 543, 665
SsiI	CCGC	3 cut(s)	16, 38, 234
SspMI	CTAG	3 cut(s)	33, 351, 581
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	2 cut(s)	184, 252
TasI	AATT	4 cut(s)	378, 515, 543, 665
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	162, 618
Tru9I	TTAA	2 cut(s)	162, 618
TscAI	CASTG	1 cut(s)	406
TspDTI	ATGAA	4 cut(s)	275, 420, 585, 706
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	406
Vha464I	CTTAAG	1 cut(s)	617
XapI	RAATTY	3 cut(s)	515, 543, 665
XbaI	TCTAGA	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	3 cut(s)	33, 351, 581
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.