AT2G22230

FabA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007315
Physical Location & Seq
Forward (+)
9449930 .. 9451623
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22230.1

Sequence Viewer

Length: 663 bp
ATGGCTACTACTTCTAACTCGGTACTTTTCCTAAGTTCTGACTCACTGATTCATCATCATCATCATCAACCTCTCCATCTATCTTCCTCCAGATCTCACTCTGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCAACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTTTCCGTTTCTGCTGGTAGATAGAGTGATAGAGTATACGCCTGGTGTTTCAGCTGTAGCTATTAAGAATGTCACCATCAATGACAATTTCTTCCCTGGCCATTTCCCTGAACGACCAATCATGCCTGGTGTTCTCATGATTGAGGCAATGGCGCAAGTCGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTCTCAAGATAACTTCTTCTTTGCTGGTATTGATAAAGTGAGATTTCGCAAACCAGTGATTGCAGGAGACACGCTAGTCATGAGGATGACTCTTCTCAAGTTCCAGAAGCGGTTCGGGCTCGCTAAAATGGAAGGTAAAGCTTATGTGGGTGGTGCTCTGGTGTGTGAAGGCGAGTTCATGATGGTTTCTGCTGGTAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
FabA

Protein Analysis

220

Amino Acids

24.24

Weight (kDa)

8.61

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ApeP-like PF22817 80 - 212 1.3e-06 ApeP dehydratase
FabA PF07977 85 - 210 1.5e-33 FabA-like domain
ApeI-like PF22818 107 - 202 8.1e-14 ApeI dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 299
AciI CCGC 1 cut(s) 568
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 1 cut(s) 153
AjnI CCWGG 3 cut(s) 304, 358, 388
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 3 cut(s) 317, 323, 599
AluI AGCT 3 cut(s) 317, 323, 599
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 1 cut(s) 120
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 2 cut(s) 439, 442
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 569
AspLEI GCGC 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 328
BalI TGGCCA 1 cut(s) 363
BanII GRGCYC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 2 cut(s) 426, 454
BccI CCATC 3 cut(s) 84, 347, 634
BciT130I CCWGG 3 cut(s) 306, 360, 390
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 2 cut(s) 318, 440
BglII AGATCT 1 cut(s) 92
BisI GCNGC 2 cut(s) 440, 443
BlsI GCNGC 2 cut(s) 441, 444
Bme1390I CCNGG 3 cut(s) 306, 360, 390
BmrFI CCNGG 3 cut(s) 306, 360, 390
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 1 cut(s) 73
BpuEI CTTGAG 2 cut(s) 447, 539
BsaJI CCNNGG 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 3 cut(s) 306, 360, 390
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMI GCAATG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 512
BseXI GCAGC 2 cut(s) 426, 454
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 519
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 579, 616
Bsp143I GATC 2 cut(s) 92, 125
BspACI CCGC 1 cut(s) 568
BspANI GGCC 1 cut(s) 363
BspHI TCATGA 3 cut(s) 399, 537, 636
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 2 cut(s) 92, 125
BssNAI GTATAC 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 300
Bst2UI CCWGG 3 cut(s) 306, 360, 390
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 2 cut(s) 95, 128
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 2 cut(s) 92, 125
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNI CCWGG 3 cut(s) 306, 360, 390
BstSCI CCNGG 3 cut(s) 304, 358, 388
BstSFI CTRYAG 2 cut(s) 318, 440
BstV1I GCAGC 2 cut(s) 426, 454
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BstZ17I GTATAC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 1 cut(s) 549
BtsIMutI CAGTG 2 cut(s) 44, 519
Cac8I GCNNGC 1 cut(s) 579
CciI TCATGA 3 cut(s) 399, 537, 636
CfoI GCGC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 23
CviAII CATG 4 cut(s) 385, 400, 538, 637
CviJI RGCY 8 cut(s) 5, 317, 323, 363, 445, 459, 577, 599
CviKI_1 RGCY 8 cut(s) 5, 317, 323, 363, 445, 459, 577, 599
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 94, 127
DpnII GATC 2 cut(s) 92, 125
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 579
EcoRII CCWGG 3 cut(s) 304, 358, 388
EcoT38I GRGCYC 1 cut(s) 579
FaeI CATG 4 cut(s) 388, 403, 541, 640
FaiI YATR 7 cut(s) 300, 386, 401, 431, 539, 603, 638
FatI CATG 4 cut(s) 384, 399, 537, 636
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 2 cut(s) 440, 443
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 2 cut(s) 440, 443
FspBI CTAG 1 cut(s) 533
GlaI GCGC 1 cut(s) 417
GluI GCNGC 2 cut(s) 440, 443
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 1 cut(s) 363
HapII CCGG 1 cut(s) 446
HhaI GCGC 1 cut(s) 418
Hin1II CATG 4 cut(s) 388, 403, 541, 640
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 3 cut(s) 41, 49, 547
HpaII CCGG 1 cut(s) 446
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 3 cut(s) 40, 245, 425
Hpy188III TCNNGA 7 cut(s) 90, 400, 464, 538, 562, 637, 660
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 584, 620
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 442, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 4 cut(s) 388, 403, 541, 640
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 2 cut(s) 92, 125
Lsp1109I GCAGC 2 cut(s) 426, 454
MaeI CTAG 1 cut(s) 533
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 94, 127
MboI GATC 2 cut(s) 92, 125
MboII GAAGA 4 cut(s) 75, 346, 466, 542
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 2 cut(s) 579, 616
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 3 cut(s) 130, 203, 349
MluNI TGGCCA 1 cut(s) 363
MlyI GAGTC 2 cut(s) 35, 541
MmeI TCCRAC 2 cut(s) 242, 403
MnlI CCTC 8 cut(s) 81, 97, 181, 267, 400, 419, 449, 534
Mox20I TGGCCA 1 cut(s) 363
MroXI GAANNNNTTC 1 cut(s) 569
MscI TGGCCA 1 cut(s) 363
MseI TTAA 2 cut(s) 234, 327
MslI CAYNNNNRTG 1 cut(s) 542
Msp20I TGGCCA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 3 cut(s) 306, 360, 390
MvaI CCWGG 3 cut(s) 306, 360, 390
MwoI GCNNNNNNNGC 1 cut(s) 574
NdeII GATC 2 cut(s) 92, 125
NlaIII CATG 4 cut(s) 388, 403, 541, 640
NmuCI GTSAC 1 cut(s) 334
PagI TCATGA 3 cut(s) 399, 537, 636
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 441, 444
PleI GAGTC 2 cut(s) 35, 541
PpsI GAGTC 2 cut(s) 35, 541
Psp6I CCWGG 3 cut(s) 304, 358, 388
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 3 cut(s) 304, 358, 388
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 2 cut(s) 234, 327
SatI GCNGC 2 cut(s) 440, 443
Sau3AI GATC 2 cut(s) 92, 125
SchI GAGTC 2 cut(s) 35, 541
ScrFI CCNGG 3 cut(s) 306, 360, 390
SduI GDGCHC 2 cut(s) 579, 616
SetI ASST 8 cut(s) 73, 173, 266, 319, 325, 430, 595, 601
SfcI CTRYAG 2 cut(s) 318, 440
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 2 cut(s) 462, 554
SmoI CTYRAG 2 cut(s) 462, 554
Sse9I AATT 3 cut(s) 130, 203, 349
SsiI CCGC 1 cut(s) 568
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 304, 358, 388
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 130, 203, 349
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 234, 327
Tru9I TTAA 2 cut(s) 234, 327
TscAI CASTG 2 cut(s) 51, 519
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 2 cut(s) 439, 442
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 41, 625
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 2 cut(s) 51, 519
XapI RAATTY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.