FvH4_1g21430

FabA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007315
Physical Location & Seq
Forward (+)
13361691 .. 13366337
4647 bp
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UTR
Exon/CDS
Intron
FvH4_1g21430.t2

Sequence Viewer

Length: 735 bp
ATGACAGTGCAAATTGGTTCAACAGCAAACCCCCGACTTCACTTCTGTCTCTGCACTTTGATTTTGAAAACAATGTCAGCCACTTCAAGTTCCCTCTTCTCTCTCACTCCTGCTCAGCCTCTTGTTCAACCCAGTAAGCTCCTTCAATCCCCAGCCTCTCTTTCCTTCTCAGCCTCTCCTCTCCCCTCTATCAAATCCAATCGCCAATCCAATCTCATTGTGTGTTGTTCTTCTCAGGAAGATGCGTCCAAAGACACCCCCATTGAATTGAAATTCCCAGCTTTTCCTACAGTGATTGATATCAATCAGATACGTGAAATCTTGCCTCACAGGTTTCCATTTCTTTTGGTGGATAGAGTGATTGAGTACAACCCAGGTGTTTCAGCTGTTGCTATTAAGAATGTGACGATCAATGACAACTTTTTCCCTGGCCATTTCCCAGAGAGGCCTATTATGCCTGGTGTTCTCATGGTTGAGGCAATGGCTCAAGTGGGAGGCATAGTTATGCTGCAACCTGAAGTGGGAGGCTCTCGTGATAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTTAGGAAGCCTGTGGTTGCAGGAGACACTTTGGTCATGAGAATGACCCTAACTAAGTTTCAAAAACGATTTGGACTAGCGAAGATGGATGGAAAGGCATATGTTGGAGGTGAGGTGGTTTGTGAAGGCGAGTTCTTGATGGTAAGTGGGAGTGGGACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
FabA

Protein Analysis

245

Amino Acids

26.53

Weight (kDa)

8.85

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ApeP-like PF22817 103 - 234 4.4e-06 ApeP dehydratase
FabA PF07977 108 - 233 4.6e-35 FabA-like domain
ApeI-like PF22818 129 - 227 3.6e-14 ApeI dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 8 cut(s) 21, 67, 87, 128, 146, 266, 271, 632
AjnI CCWGG 3 cut(s) 373, 427, 457
AluBI AGCT 3 cut(s) 139, 281, 386
AluI AGCT 3 cut(s) 139, 281, 386
Alw26I GTCTC 2 cut(s) 53, 588
AoxI GGCC 2 cut(s) 430, 446
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 692
BalI TGGCCA 1 cut(s) 432
BauI CACGAG 1 cut(s) 531
BbvI GCAGC 1 cut(s) 495
BccI CCATC 3 cut(s) 649, 653, 703
BciT130I CCWGG 3 cut(s) 375, 429, 459
BcoDI GTCTC 2 cut(s) 53, 588
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 509
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 3 cut(s) 375, 429, 459
BmrFI CCNGG 3 cut(s) 375, 429, 459
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 314
BsaBI GATNNNNATC 2 cut(s) 299, 303
BsaJI CCNNGG 2 cut(s) 373, 427
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 669, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 2 cut(s) 299, 303
BseBI CCWGG 3 cut(s) 375, 429, 459
BseDI CCNNGG 2 cut(s) 373, 427
BseGI GGATG 1 cut(s) 664
BseJI GATNNNNATC 2 cut(s) 299, 303
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 3 cut(s) 128, 183, 248
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 495
BseYI CCCAGC 2 cut(s) 151, 277
BsgI GTGCAG 1 cut(s) 37
BshFI GGCC 2 cut(s) 432, 448
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 2 cut(s) 53, 588
BsnI GGCC 2 cut(s) 432, 448
Bsp143I GATC 1 cut(s) 408
Bsp1720I GCTNAGC 1 cut(s) 114
BspANI GGCC 2 cut(s) 432, 448
BspCNI CTCAG 3 cut(s) 127, 182, 247
BspHI TCATGA 1 cut(s) 606
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 373, 427
BssMI GATC 1 cut(s) 408
BssSI CACGAG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 3 cut(s) 375, 429, 459
Bst4CI ACNGT 2 cut(s) 7, 292
Bst6I CTCTTC 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 314
BstDEI CTNAG 4 cut(s) 114, 169, 234, 624
BstF5I GGATG 1 cut(s) 664
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 2 cut(s) 53, 588
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 3 cut(s) 375, 429, 459
BstSCI CCNGG 3 cut(s) 373, 427, 457
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 495
BsuRI GGCC 2 cut(s) 432, 448
BtsCI GGATG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 12, 297
CciI TCATGA 1 cut(s) 606
CseI GACGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 469, 607
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 4 cut(s) 114, 169, 234, 624
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco147I AGGCCT 1 cut(s) 448
Eco32I GATATC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 537
EcoRII CCWGG 3 cut(s) 373, 427, 457
EcoRV GATATC 1 cut(s) 301
FaeI CATG 2 cut(s) 472, 610
FaiI YATR 7 cut(s) 455, 470, 500, 506, 608, 670, 672
FatI CATG 2 cut(s) 468, 606
FauNDI CATATG 1 cut(s) 670
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 1 cut(s) 671
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 1 cut(s) 647
GluI GCNGC 1 cut(s) 509
GsaI CCCAGC 2 cut(s) 155, 281
HaeIII GGCC 2 cut(s) 432, 448
HgaI GACGC 1 cut(s) 234
Hin1II CATG 2 cut(s) 472, 610
HphI GGTGA 1 cut(s) 692
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 4 cut(s) 236, 533, 607, 706
HpyAV CCTTC 3 cut(s) 152, 175, 689
HpyCH4III ACNGT 2 cut(s) 7, 292
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 5 cut(s) 10, 54, 511, 551, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 4 cut(s) 114, 169, 234, 624
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 2 cut(s) 472, 610
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 647
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 403
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 5 cut(s) 88, 222, 251, 535, 664
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 5 cut(s) 12, 266, 272, 538, 555
MluNI TGGCCA 1 cut(s) 432
MmeI TCCRAC 1 cut(s) 655
Mox20I TGGCCA 1 cut(s) 432
MscI TGGCCA 1 cut(s) 432
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 503, 611
Msp20I TGGCCA 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 386
MspR9I CCNGG 3 cut(s) 375, 429, 459
MvaI CCWGG 3 cut(s) 375, 429, 459
MwoI GCNNNNNNNGC 1 cut(s) 454
NdeI CATATG 1 cut(s) 670
NdeII GATC 1 cut(s) 408
NlaIII CATG 2 cut(s) 472, 610
NmuCI GTSAC 1 cut(s) 403
PagI TCATGA 1 cut(s) 606
PceI AGGCCT 1 cut(s) 448
PkrI GCNGC 1 cut(s) 510
Ppu21I YACGTR 1 cut(s) 314
Psp6I CCWGG 3 cut(s) 373, 427, 457
PspFI CCCAGC 2 cut(s) 151, 277
PspGI CCWGG 3 cut(s) 373, 427, 457
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 2 cut(s) 503, 611
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 1 cut(s) 408
ScrFI CCNGG 3 cut(s) 375, 429, 459
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 288
SmiMI CAYNNNNRTG 2 cut(s) 503, 611
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
Sse9I AATT 5 cut(s) 12, 266, 272, 538, 555
SseBI AGGCCT 1 cut(s) 448
SspMI CTAG 1 cut(s) 647
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 3 cut(s) 373, 427, 457
TaaI ACNGT 2 cut(s) 7, 292
TaiI ACGT 1 cut(s) 316
TasI AATT 5 cut(s) 12, 266, 272, 538, 555
TatI WGTACW 1 cut(s) 366
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 2 cut(s) 12, 297
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 403
TspRI CASTG 2 cut(s) 12, 297
XapI RAATTY 1 cut(s) 272
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.