Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007315

Physical Location & Seq

Genomic Coordinates Reverse (-)

18231055 .. 18231608

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCCTAACAGTAGCCTTGACACACATCTATTTGGCCCTAGAGCAACTTTGCAATGGGAGTTTAGGTATAGAATAGCTCTAGGCTTGGCCTCGGCGCTTCATTATCTACATGAAGATGCAGAGCAGTGTGTCCTTCATAGGGACATCAAATCAACTAACGTTCTGTTGGACAACGATTGTAGCACTAAACTTTTTGATTTTGGGATTGCTAAGCTTGTGGATCCGCGGTTAAGGAGGACTTACCACGACGGAGAATTCCACTTACCACTTTATAGGTGGGTTTGGCATTTGTACCTTGCAAGAAACTTACTGGATGCTGCTGATGAGAGGTTGGGTATGGATTTTGATCAAAATGAAATCGAATGCTTGTTAATTGTTGGATTATGGTGCACTCACCCCAACAACAAAGAAAGGCTGAAAGTAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

FabA

Protein Analysis

142

Amino Acids

16.63

Weight (kDa)

6.03

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 76	2.8e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	22 - 76	2.3e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22230 AT5G10160
fragaria_vesca	FvH4_1g21430 FvH4_1g21430
malus_domestica	MD00G1064800.v1.1 MD08G1220800.v1.1 MD15G1411500.v1.1
prunus_persica	Prupe.1G557700_v2.0.a1 Prupe.6G180800_v2.0.a1
pyrus_communis	pycom08g19160 pycom15g36630
rosa_chinensis	RchiOBHm_Chr2g0115241
rosa_laevigata	RLG00000018169
rosa_multiflora	Rmu_sc0001626.1_g000050 Rmu_sc0001626.1_g000056 Rmu_sc0002784.1_g000057
rosa_roxburghii	Rroxscaffold_2G00130790
rosa_rugosa	Rorug02G0195200 Rorug02G0195300
rosa_samantha	Rh2AG253200 Rh2BG263200 Rh2BG263400 Rh2DG261400
rosa_wichuraiana	Rw2G019770 Rw2G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	226
AciI	CCGC	2 cut(s)	224, 226
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	2 cut(s)	215, 228
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	77, 214
AluI	AGCT	2 cut(s)	77, 214
Alw21I	GWGCWC	1 cut(s)	392
Alw44I	GTGCAC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	215, 228
AoxI	GGCC	2 cut(s)	34, 87
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	304
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	2 cut(s)	39, 80
BfoI	RGCGCY	1 cut(s)	98
BisI	GCNGC	1 cut(s)	318
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	222
BmsI	GCATC	2 cut(s)	106, 304
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	90, 224
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	90, 224
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	315
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	36, 89
BsiHKAI	GWGCWC	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	36, 89
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	220, 346
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	224, 226
BspANI	GGCC	2 cut(s)	36, 89
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	2 cut(s)	215, 228
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	90, 224
BssMI	GATC	2 cut(s)	220, 346
Bst4CI	ACNGT	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	223, 349
BstMBI	GATC	2 cut(s)	220, 346
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	36, 89
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	35
Cfr42I	CCGCGG	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	7 cut(s)	15, 36, 77, 84, 89, 214, 415
CviKI_1	RGCY	7 cut(s)	15, 36, 77, 84, 89, 214, 415
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	222, 348
DpnII	GATC	2 cut(s)	220, 346
EcoRI	GAATTC	1 cut(s)	254
FaeI	CATG	1 cut(s)	113
FaiI	YATR	6 cut(s)	69, 111, 138, 273, 338, 385
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	2 cut(s)	39, 80
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	36, 89
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	212
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	390
Hpy8I	GTNNAC	1 cut(s)	390
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	52, 119, 299, 390
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	220, 346
LpnPI	CCDG	1 cut(s)	296
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	106, 304
MaeI	CTAG	2 cut(s)	39, 80
MaeII	ACGT	1 cut(s)	159
MalI	GATC	2 cut(s)	222, 348
MboI	GATC	2 cut(s)	220, 346
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	254, 372
MmeI	TCCRAC	2 cut(s)	147, 358
MnlI	CCTC	3 cut(s)	100, 228, 321
MseI	TTAA	2 cut(s)	230, 371
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	226
Mva1269I	GAATGC	1 cut(s)	368
MvnI	CGCG	1 cut(s)	226
NdeII	GATC	2 cut(s)	220, 346
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	71
PctI	GAATGC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	319
Psp1406I	AACGTT	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	114
SacII	CCGCGG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	230, 371
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	220, 346
Sau96I	GGNCC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	7 cut(s)	68, 79, 162, 216, 278, 297, 332
SfaNI	GCATC	2 cut(s)	106, 304
Sfr303I	CCGCGG	1 cut(s)	227
SgrBI	CCGCGG	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	254, 372
SsiI	CCGC	2 cut(s)	224, 226
SspMI	CTAG	2 cut(s)	39, 80
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	360
TasI	AATT	2 cut(s)	254, 372
Tru1I	TTAA	2 cut(s)	230, 371
Tru9I	TTAA	2 cut(s)	230, 371
TscAI	CASTG	1 cut(s)	131
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	89, 125, 126, 369
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XspI	CTAG	2 cut(s)	39, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.