Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007315

Physical Location & Seq

Genomic Coordinates Forward (+)

12392301 .. 12399431

Gene Structure 7131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1064800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCAGCAGCTATCTCAAGCTCCCTTTTTTCTCTCGCTCCTGCTCAGTCACTCACCCAACCCAGAAACCTAAGAATCCTTCACTCTCCCACCTCTCTTGCTCTTCCAATTTCTCCTTCTCTTTGTCTCAAATCCAATCGCCACCCCAATCTCTTCGCATGTTGTTCTCTAAATGTACAAGACAGCACAGCCCAAGACACACCCATTGAAAAGCAATACCCAGCATTTCCTACGGTAATGGATATTAATCAGATACTTGAAATCTTGCCCCACAGGTTCCCTTTTCTTCTAGTGGATAGAGTGATTGAGTACAATCCTGGGGTTTCAGCTGTTGCTATTAAGAATGTGACCATAAATGATAACTTTTTCCCTGGCCACTTCCCAGAAAGGCCTATTATGCCTGGAGTTCTCATGATTGAGGCAATGGCTCAGGTGGGAGGCATTGTTATGCTGCAACCTGAAGTTGGAGGATCTCGTGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTTAGAAAGCCTGTAATTGCAGGAGACACATTGGTGATGAGAATGACTCTAGTTAAGTTTCAAAAACGGTTTGGAATAGCAAAGATGGAGGGTAAGGCATATGTCGGAGGTGACTTGGTCTGCGAGGGCGAATTCTTGATGGCAAGTGGGAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

FabA

Protein Analysis

224

Amino Acids

24.42

Weight (kDa)

8.38

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ApeP-like	PF22817	84 - 148	8.4e-06	ApeP dehydratase
FabA	PF07977	89 - 214	4.4e-34	FabA-like domain
ApeI-like	PF22818	110 - 207	6.3e-14	ApeI dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22230 AT5G10160
fragaria_vesca	FvH4_1g21430 FvH4_1g21430
malus_domestica	MD00G1064800.v1.1 MD08G1220800.v1.1 MD15G1411500.v1.1
prunus_persica	Prupe.1G557700_v2.0.a1 Prupe.6G180800_v2.0.a1
pyrus_communis	pycom08g19160 pycom15g36630
rosa_chinensis	RchiOBHm_Chr2g0115241
rosa_laevigata	RLG00000018169
rosa_multiflora	Rmu_sc0001626.1_g000050 Rmu_sc0001626.1_g000056 Rmu_sc0002784.1_g000057
rosa_roxburghii	Rroxscaffold_2G00130790
rosa_rugosa	Rorug02G0195200 Rorug02G0195300
rosa_samantha	Rh2AG253200 Rh2BG263200 Rh2BG263400 Rh2DG261400
rosa_wichuraiana	Rw2G019770 Rw2G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	478
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	2 cut(s)	177, 311
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	209, 260, 575
AjnI	CCWGG	3 cut(s)	316, 370, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	3 cut(s)	11, 21, 329
AluI	AGCT	3 cut(s)	11, 21, 329
Alw26I	GTCTC	2 cut(s)	131, 531
AlwI	GGATC	1 cut(s)	478
AoxI	GGCC	2 cut(s)	373, 389
ApeKI	GCWGC	2 cut(s)	8, 451
ApoI	RAATTY	1 cut(s)	644
AseI	ATTAAT	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	46, 559, 635
BalI	TGGCCA	1 cut(s)	375
BauI	CACGAG	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	20, 438
BccI	CCATC	2 cut(s)	592, 646
BciT130I	CCWGG	3 cut(s)	318, 372, 402
BcoDI	GTCTC	2 cut(s)	131, 531
BfaI	CTAG	2 cut(s)	290, 563
BisI	GCNGC	2 cut(s)	9, 452
BlsI	GCNGC	2 cut(s)	10, 453
Bme1390I	CCNGG	3 cut(s)	318, 372, 402
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	3 cut(s)	318, 372, 402
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	317, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	318, 372, 402
BseDI	CCNNGG	2 cut(s)	317, 370
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	59, 443
BseXI	GCAGC	2 cut(s)	20, 438
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	375, 391
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	2 cut(s)	131, 531
BsnI	GGCC	2 cut(s)	375, 391
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	470
BspANI	GGCC	2 cut(s)	375, 391
BspCNI	CTCAG	2 cut(s)	58, 442
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	478
BspQI	GCTCTTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	317, 370
BssMI	GATC	1 cut(s)	470
BssSI	CACGAG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	3 cut(s)	318, 372, 402
Bst4CI	ACNGT	2 cut(s)	235, 582
Bst6I	CTCTTC	2 cut(s)	108, 158
BstAUI	TGTACA	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	45, 71, 429
BstKTI	GATC	1 cut(s)	473
BstMAI	GTCTC	2 cut(s)	131, 531
BstMBI	GATC	1 cut(s)	470
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	3 cut(s)	318, 372, 402
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	3 cut(s)	316, 370, 400
BstV1I	GCAGC	2 cut(s)	20, 438
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	375, 391
CciI	TCATGA	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	176, 310
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	2 cut(s)	159, 412
CviJI	RGCY	8 cut(s)	11, 21, 191, 329, 375, 391, 428, 523
CviKI_1	RGCY	8 cut(s)	11, 21, 191, 329, 375, 391, 428, 523
CviQI	GTAC	2 cut(s)	176, 310
DdeI	CTNAG	3 cut(s)	45, 71, 429
DpnI	GATC	1 cut(s)	472
DpnII	GATC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	108, 158
EarI	CTCTTC	2 cut(s)	108, 158
Eco147I	AGGCCT	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	3 cut(s)	316, 370, 400
FaeI	CATG	2 cut(s)	162, 415
FaiI	YATR	7 cut(s)	160, 353, 398, 413, 449, 613, 615
FatI	CATG	2 cut(s)	158, 411
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	2 cut(s)	9, 452
Fsp4HI	GCNGC	2 cut(s)	9, 452
FspBI	CTAG	2 cut(s)	290, 563
GluI	GCNGC	2 cut(s)	9, 452
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	375, 391
Hin1II	CATG	2 cut(s)	162, 415
HinfI	GANTC	2 cut(s)	75, 559
HphI	GGTGA	3 cut(s)	46, 559, 635
Hpy188I	TCNGA	2 cut(s)	252, 620
Hpy188III	TCNNGA	3 cut(s)	412, 476, 649
HpyAV	CCTTC	2 cut(s)	89, 126
HpyCH4III	ACNGT	2 cut(s)	235, 582
HpyCH4V	TGCA	3 cut(s)	454, 494, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	3 cut(s)	45, 71, 429
Hsp92II	CATG	2 cut(s)	162, 415
Kzo9I	GATC	1 cut(s)	470
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	26, 43
Lsp1109I	GCAGC	2 cut(s)	20, 438
MaeI	CTAG	2 cut(s)	290, 563
MaeIII	GTNAC	4 cut(s)	48, 346, 476, 623
MalI	GATC	1 cut(s)	472
MboI	GATC	1 cut(s)	470
MboII	GAAGA	4 cut(s)	95, 145, 278, 478
MflI	RGATCY	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	5 cut(s)	108, 481, 498, 528, 644
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	2 cut(s)	445, 598
MnlI	CCTC	8 cut(s)	103, 412, 431, 461, 504, 595, 614, 631
Mox20I	TGGCCA	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	4 cut(s)	246, 339, 567, 670
MslI	CAYNNNNRTG	2 cut(s)	446, 545
Msp20I	TGGCCA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	318, 372, 402
MvaI	CCWGG	3 cut(s)	318, 372, 402
MwoI	GCNNNNNNNGC	1 cut(s)	397
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	1 cut(s)	470
NlaIII	CATG	2 cut(s)	162, 415
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	4 cut(s)	48, 346, 476, 623
NspI	RCATGY	1 cut(s)	162
OliI	CACNNNNGTG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	411
PceI	AGGCCT	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	629
PkrI	GCNGC	2 cut(s)	10, 453
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	3 cut(s)	316, 370, 400
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	3 cut(s)	316, 370, 400
PspN4I	GGNNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	470
PsyI	GACNNNGTC	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	177, 311
RsaNI	GTAC	2 cut(s)	176, 310
RseI	CAYNNNNRTG	2 cut(s)	446, 545
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	246, 339, 567, 670
SatI	GCNGC	2 cut(s)	9, 452
Sau3AI	GATC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	3 cut(s)	318, 372, 402
SmiMI	CAYNNNNRTG	2 cut(s)	446, 545
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	5 cut(s)	108, 481, 498, 528, 644
SseBI	AGGCCT	1 cut(s)	391
SspMI	CTAG	2 cut(s)	290, 563
StuI	AGGCCT	1 cut(s)	391
StyD4I	CCNGG	3 cut(s)	316, 370, 400
TaaI	ACNGT	2 cut(s)	235, 582
TasI	AATT	5 cut(s)	108, 481, 498, 528, 644
TatI	WGTACW	2 cut(s)	175, 309
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	4 cut(s)	246, 339, 567, 670
Tru9I	TTAA	4 cut(s)	246, 339, 567, 670
TseFI	GTSAC	4 cut(s)	48, 346, 476, 623
TseI	GCWGC	2 cut(s)	8, 451
Tsp45I	GTSAC	4 cut(s)	48, 346, 476, 623
Tth111I	GACNNNGTC	1 cut(s)	629
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	1 cut(s)	162
XspI	CTAG	2 cut(s)	290, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.