Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007315

Physical Location & Seq

Genomic Coordinates Forward (+)

28361774 .. 28364798

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1220800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGACCGCAGCTTCCTCCACCTCCTTCACTTGCCACTCCCCGCTCATTCACCGCCCAAATGCTCCATCCCGAATCTCTGTCGCCGTCGCGATTCCCAGGTGTCTGCTGCCGTTGCCGCATTTGAAAACTAAGAGGAGGAGTTCAACCACCACCCATTGCTCCGCCGACGCTGCGAAGGATAAAGATTCCACCCCCATTGAGCTCAGATATGAGGCTTTTCCTACCGTCATGGACATCAATCAAATTCGTGATATTTTGCCTCACCGGTTTCCGTTTCTGTTAGTGGATAGAGTGATTGAATACAATGCTGGAGTTTCAGCTGTTGCAATCAAGAATGTCACCATCAATGATAATTTCTTTCCTGGGCATTTCCCCGAGAGGCCGATTATGCCTGGTGTTCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATGCTACAACCTGAAGTGGGAGGTTCTCGTGACACTTTCTTTTTTGCCGGAATTGACAAAGTTCGATTCAGGAAACCAGTGATCGCCGGTGACACATTAGTGATGAGAATGACGCTTATTAAGTTGCAGAAACGCTTTGGAATTGCAAAGATGGAAGGCAAGGCCTACGTTGGAGGTGAAGTCGTATGTGAGGGAGAATTTCTGATGGCTACCGGTACCGGTGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

FabA

Protein Analysis

224

Amino Acids

24.39

Weight (kDa)

9.14

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ApeP-like	PF22817	82 - 212	3.7e-06	ApeP dehydratase
FabA	PF07977	87 - 212	1.7e-34	FabA-like domain
ApeI-like	PF22818	108 - 206	8e-14	ApeI dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22230 AT5G10160
fragaria_vesca	FvH4_1g21430 FvH4_1g21430
malus_domestica	MD00G1064800.v1.1 MD08G1220800.v1.1 MD15G1411500.v1.1
prunus_persica	Prupe.1G557700_v2.0.a1 Prupe.6G180800_v2.0.a1
pyrus_communis	pycom08g19160 pycom15g36630
rosa_chinensis	RchiOBHm_Chr2g0115241
rosa_laevigata	RLG00000018169
rosa_multiflora	Rmu_sc0001626.1_g000050 Rmu_sc0001626.1_g000056 Rmu_sc0002784.1_g000057
rosa_roxburghii	Rroxscaffold_2G00130790
rosa_rugosa	Rorug02G0195200 Rorug02G0195300
rosa_samantha	Rh2AG253200 Rh2BG263200 Rh2BG263400 Rh2DG261400
rosa_wichuraiana	Rw2G019770 Rw2G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	656
AccB1I	GGYRCC	1 cut(s)	656
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	92
AciI	CCGC	5 cut(s)	9, 44, 55, 119, 165
AcsI	RAATTY	2 cut(s)	246, 638
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgeI	ACCGGT	3 cut(s)	267, 653, 659
AgsI	TTSAA	3 cut(s)	127, 147, 302
AjnI	CCWGG	3 cut(s)	98, 364, 394
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	14, 205, 323
AluI	AGCT	3 cut(s)	14, 205, 323
Alw21I	GWGCWC	1 cut(s)	207
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	2 cut(s)	383, 603
ApeKI	GCWGC	3 cut(s)	11, 109, 173
ApoI	RAATTY	2 cut(s)	246, 638
AsiGI	ACCGGT	3 cut(s)	267, 653, 659
Asp718I	GGTACC	1 cut(s)	656
AsuHPI	GGTGA	5 cut(s)	44, 257, 334, 542, 629
AvaI	CYCGRG	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	656
BanII	GRGCYC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	23, 96, 160
BccI	CCATC	4 cut(s)	76, 353, 586, 640
BceAI	ACGGC	2 cut(s)	71, 97
BciT130I	CCWGG	3 cut(s)	100, 366, 396
BisI	GCNGC	4 cut(s)	12, 110, 119, 174
BlsI	GCNGC	4 cut(s)	13, 111, 120, 175
Bme1390I	CCNGG	3 cut(s)	100, 366, 396
BmeT110I	CYCGRG	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	3 cut(s)	100, 366, 396
BpmI	CTGGAG	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	98, 365
BsaWI	WCCGGW	3 cut(s)	267, 653, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse118I	RCCGGY	4 cut(s)	267, 527, 653, 659
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	2 cut(s)	157, 423
BseBI	CCWGG	3 cut(s)	100, 366, 396
BseDI	CCNNGG	2 cut(s)	98, 365
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	2 cut(s)	157, 423
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	2 cut(s)	151, 154
BseXI	GCAGC	3 cut(s)	23, 96, 160
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	385, 605
BshNI	GGYRCC	1 cut(s)	656
BshTI	ACCGGT	3 cut(s)	267, 653, 659
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	5 cut(s)	268, 489, 528, 654, 660
BslI	CCNNNNNNNGG	1 cut(s)	458
BsnI	GGCC	2 cut(s)	385, 605
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	522
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	5 cut(s)	9, 44, 55, 119, 165
BspANI	GGCC	2 cut(s)	385, 605
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	658
BspT107I	GGYRCC	1 cut(s)	656
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	157, 423
BsrFI	RCCGGY	4 cut(s)	267, 527, 653, 659
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	4 cut(s)	267, 527, 653, 659
BssECI	CCNNGG	2 cut(s)	98, 365
BssMI	GATC	1 cut(s)	522
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	3 cut(s)	100, 366, 396
Bst4CI	ACNGT	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	132, 206
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	525
BstMBI	GATC	1 cut(s)	522
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 118, 173, 391
BstNI	CCWGG	3 cut(s)	100, 366, 396
BstSCI	CCNGG	3 cut(s)	98, 364, 394
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	23, 96, 160
BsuRI	GGCC	2 cut(s)	385, 605
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	525
BtuMI	TCGCGA	1 cut(s)	92
Cfr10I	RCCGGY	4 cut(s)	267, 527, 653, 659
CseI	GACGC	2 cut(s)	179, 562
Csp6I	GTAC	1 cut(s)	657
CspAI	ACCGGT	3 cut(s)	267, 653, 659
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	2 cut(s)	232, 406
CviJI	RGCY	8 cut(s)	14, 205, 218, 323, 385, 435, 605, 650
CviKI_1	RGCY	8 cut(s)	14, 205, 218, 323, 385, 435, 605, 650
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	2 cut(s)	132, 206
DpnI	GATC	1 cut(s)	524
DpnII	GATC	1 cut(s)	522
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	3 cut(s)	98, 364, 394
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	2 cut(s)	235, 409
FaiI	YATR	6 cut(s)	213, 233, 392, 407, 443, 628
FatI	CATG	2 cut(s)	231, 405
FauI	CCCGC	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	12, 110, 119, 174
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	4 cut(s)	12, 110, 119, 174
GluI	GCNGC	4 cut(s)	12, 110, 119, 174
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	385, 605
HapII	CCGG	5 cut(s)	268, 489, 528, 654, 660
HgaI	GACGC	2 cut(s)	179, 562
Hin1II	CATG	2 cut(s)	235, 409
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	75, 94, 188, 507
HpaII	CCGG	5 cut(s)	268, 489, 528, 654, 660
HphI	GGTGA	5 cut(s)	44, 257, 334, 542, 629
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	209, 645
Hpy188III	TCNNGA	6 cut(s)	72, 91, 251, 334, 470, 511
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	92, 173
HpyAV	CCTTC	3 cut(s)	37, 172, 590
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	3 cut(s)	329, 568, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 118, 173, 391
HpyF3I	CTNAG	2 cut(s)	132, 206
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	2 cut(s)	235, 409
KpnI	GGTACC	1 cut(s)	660
Kzo9I	GATC	1 cut(s)	522
LmnI	GCTCC	2 cut(s)	70, 167
Lsp1109I	GCAGC	3 cut(s)	23, 96, 160
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	4 cut(s)	340, 470, 530, 665
MalI	GATC	1 cut(s)	524
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	246, 355, 492, 582, 638
MmeI	TCCRAC	1 cut(s)	592
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	5 cut(s)	268, 489, 528, 654, 660
MspR9I	CCNGG	3 cut(s)	100, 366, 396
MvaI	CCWGG	3 cut(s)	100, 366, 396
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	115, 118, 173, 391
NdeII	GATC	1 cut(s)	522
NlaIII	CATG	2 cut(s)	235, 409
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	4 cut(s)	340, 470, 530, 665
NruI	TCGCGA	1 cut(s)	92
OliI	CACNNNNGTG	1 cut(s)	539
PceI	AGGCCT	1 cut(s)	605
PfeI	GAWTC	4 cut(s)	75, 94, 188, 507
PinAI	ACCGGT	3 cut(s)	267, 653, 659
PkrI	GCNGC	4 cut(s)	13, 111, 120, 175
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	98, 364, 394
PspGI	CCWGG	3 cut(s)	98, 364, 394
PspN4I	GGNNCC	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	92
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	4 cut(s)	12, 110, 119, 174
Sau3AI	GATC	1 cut(s)	522
ScrFI	CCNGG	3 cut(s)	100, 366, 396
SduI	GDGCHC	1 cut(s)	207
SgrAI	CRCCGGYG	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	246, 355, 492, 582, 638
SseBI	AGGCCT	1 cut(s)	605
SsiI	CCGC	5 cut(s)	9, 44, 55, 119, 165
SstI	GAGCTC	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	605
StyD4I	CCNGG	3 cut(s)	98, 364, 394
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	2 cut(s)	5, 505
TasI	AATT	5 cut(s)	246, 355, 492, 582, 638
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	4 cut(s)	75, 94, 188, 507
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	4 cut(s)	340, 470, 530, 665
TseI	GCWGC	3 cut(s)	11, 109, 173
Tsp45I	GTSAC	4 cut(s)	340, 470, 530, 665
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	525
XapI	RAATTY	2 cut(s)	246, 638
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.