Rmu_sc0002784.1_g000057

FabA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002784.1
OG0007315
Physical Location & Seq
Forward (+)
238222 .. 242952
4731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002784.1_g000057.1.cds

Sequence Viewer

Length: 663 bp
atgtcagccacctcaagttccctcttctctctcactcctgctcagtctctggttcaacccagaaagctccttcaatccccagcctctctttccctctcagcctctcctctcccctctctcaaatccaatcgccaatcaaatctcattgtttgctgttcttctcaagaagatgcccccaaagacatccccattgaattgaaattcccagcttttcctacagtgattgatatcaatcagatacgtgaaatcttgcctcaccggtttccatttcttttggtggatagagttattgagtacaacccaggtgtttcagctgttgctattaagaatgtgacgattaatgataactttttccctggccatttcccagagaggcctattatgcccggtgttctcatggttgaggcaatggctcaagtgggaggcatagttatgctgcaacctgaagtgggaggctctcgtgacagtttcttcttcgcaggaattgataaagtgaggtttaggaagcctgtgattgcaggagacactttggtcatgagaatgactttaaccaagtttcaaaaacgatttggaatagcaaagatggatggaaaggcatatgttggaggtgaggtggtctgtgaaggcgagttcttgatggctagtgggagtgggactgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
FabA

Protein Analysis

220

Amino Acids

23.89

Weight (kDa)

8.82

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 449
AgeI ACCGGT 1 cut(s) 258
AgsI TTSAA 5 cut(s) 56, 74, 194, 199, 560
AjnI CCWGG 2 cut(s) 301, 355
AluBI AGCT 3 cut(s) 67, 209, 314
AluI AGCT 3 cut(s) 67, 209, 314
Alw26I GTCTC 2 cut(s) 51, 516
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 2 cut(s) 358, 374
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 1 cut(s) 200
AseI ATTAAT 1 cut(s) 339
AsiGI ACCGGT 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 248, 620
BalI TGGCCA 1 cut(s) 360
BauI CACGAG 1 cut(s) 459
BbvI GCAGC 1 cut(s) 423
BccI CCATC 3 cut(s) 577, 581, 631
BciT130I CCWGG 2 cut(s) 303, 357
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 2 cut(s) 51, 516
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 3 cut(s) 303, 357, 387
BmrFI CCNGG 3 cut(s) 303, 357, 387
BmsI GCATC 1 cut(s) 160
BpuEI CTTGAG 2 cut(s) 147, 399
BpuMI CCSGG 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 242
BsaBI GATNNNNATC 2 cut(s) 227, 231
BsaJI CCNNGG 2 cut(s) 301, 355
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 4 cut(s) 414, 444, 597, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 414
Bse8I GATNNNNATC 2 cut(s) 227, 231
BseBI CCWGG 2 cut(s) 303, 357
BseDI CCNNGG 2 cut(s) 301, 355
BseGI GGATG 2 cut(s) 183, 592
BseJI GATNNNNATC 2 cut(s) 227, 231
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 56, 111
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 423
BseYI CCCAGC 2 cut(s) 79, 205
BshFI GGCC 2 cut(s) 360, 376
BshTI ACCGGT 1 cut(s) 258
BsiSI CCGG 2 cut(s) 259, 387
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 51, 516
BsnI GGCC 2 cut(s) 360, 376
BspANI GGCC 2 cut(s) 360, 376
BspCNI CTCAG 2 cut(s) 55, 110
BspHI TCATGA 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 301, 355
BssSI CACGAG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 303, 357
Bst4CI ACNGT 2 cut(s) 220, 467
Bst6I CTCTTC 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 242
BstDEI CTNAG 2 cut(s) 42, 97
BstF5I GGATG 2 cut(s) 183, 592
BstMAI GTCTC 2 cut(s) 51, 516
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNI CCWGG 2 cut(s) 303, 357
BstSCI CCNGG 3 cut(s) 301, 355, 385
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 423
BsuRI GGCC 2 cut(s) 360, 376
BtsCI GGATG 2 cut(s) 183, 592
BtsIMutI CAGTG 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 49
CciI TCATGA 1 cut(s) 534
Cfr10I RCCGGY 1 cut(s) 258
Csp6I GTAC 1 cut(s) 295
CspAI ACCGGT 1 cut(s) 258
CviAII CATG 2 cut(s) 397, 535
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 42, 97
DrdI GACNNNNNNGTC 1 cut(s) 530
DseDI GACNNNNNNGTC 1 cut(s) 530
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 376
Eco32I GATATC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 301, 355
EcoRV GATATC 1 cut(s) 229
FaeI CATG 2 cut(s) 400, 538
FaiI YATR 7 cut(s) 383, 398, 428, 434, 536, 598, 600
FatI CATG 2 cut(s) 396, 534
FauNDI CATATG 1 cut(s) 598
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 2 cut(s) 170, 599
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 1 cut(s) 642
GluI GCNGC 1 cut(s) 437
GsaI CCCAGC 2 cut(s) 83, 209
HaeIII GGCC 2 cut(s) 360, 376
HapII CCGG 2 cut(s) 259, 387
Hin1II CATG 2 cut(s) 400, 538
HpaII CCGG 2 cut(s) 259, 387
HphI GGTGA 2 cut(s) 248, 620
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 4 cut(s) 164, 461, 535, 634
HpyAV CCTTC 2 cut(s) 80, 617
HpyCH4III ACNGT 2 cut(s) 220, 467
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 439, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 42, 97
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 2 cut(s) 400, 538
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 642
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 331, 461
MboII GAAGA 5 cut(s) 16, 150, 179, 463, 466
MlsI TGGCCA 1 cut(s) 360
MluCI AATT 3 cut(s) 194, 200, 483
MluNI TGGCCA 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 583
Mox20I TGGCCA 1 cut(s) 360
MscI TGGCCA 1 cut(s) 360
MseI TTAA 3 cut(s) 324, 339, 548
MslI CAYNNNNRTG 2 cut(s) 431, 539
Msp20I TGGCCA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 2 cut(s) 259, 387
MspR9I CCNGG 3 cut(s) 303, 357, 387
MvaI CCWGG 2 cut(s) 303, 357
MwoI GCNNNNNNNGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 387
NdeI CATATG 1 cut(s) 598
NlaIII CATG 2 cut(s) 400, 538
NmuCI GTSAC 2 cut(s) 331, 461
PagI TCATGA 1 cut(s) 534
PceI AGGCCT 1 cut(s) 376
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 1 cut(s) 438
Ppu21I YACGTR 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 301, 355
PspFI CCCAGC 2 cut(s) 79, 205
PspGI CCWGG 2 cut(s) 301, 355
PstNI CAGNNNCTG 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 2 cut(s) 431, 539
SaqAI TTAA 3 cut(s) 324, 339, 548
SatI GCNGC 1 cut(s) 437
ScrFI CCNGG 3 cut(s) 303, 357, 387
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 216
SmiMI CAYNNNNRTG 2 cut(s) 431, 539
SmlI CTYRAG 3 cut(s) 13, 162, 414
SmoI CTYRAG 3 cut(s) 13, 162, 414
Sse9I AATT 3 cut(s) 194, 200, 483
SseBI AGGCCT 1 cut(s) 376
SspMI CTAG 1 cut(s) 642
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 3 cut(s) 301, 355, 385
TaaI ACNGT 2 cut(s) 220, 467
TaiI ACGT 1 cut(s) 244
TasI AATT 3 cut(s) 194, 200, 483
TatI WGTACW 1 cut(s) 294
Tru1I TTAA 3 cut(s) 324, 339, 548
Tru9I TTAA 3 cut(s) 324, 339, 548
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 2 cut(s) 331, 461
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 2 cut(s) 331, 461
TspRI CASTG 1 cut(s) 225
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.