Prupe.6G180800_v2.0.a1

FabA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007315
Physical Location & Seq
Reverse (-)
18732280 .. 18737707
5428 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G180800.1

Sequence Viewer

Length: 837 bp
ATGATTTTTACATCCCAAATTTACAACATTGCATTGGAGTTGTTCTTAGCAAAATCACAAGATAAACAGACGGAAGCAGTTGAACAACTTATTCACCAACCCCTCAGAATTCATTTAAAATCCCTCGCTGTTGTAGTGCAGTGTGCTGTTGCTCTGTTTCTAACAATGTCGGCCTCGAGTTCCCTCATGTATCTCGCTCCCGCTCAGTCTCTGAGTCAACCCAGAAGAGTAAAACTCGTTCAGTCTCCGACCTCTCTTTCAGTTTCTCTCCCAATTTCTCGTATGCTTTGCCTTAAATCAAATCACCAACGGAATCTCTTCGCATGTTGTTCTCTAAATGTACAAGACAGCGCCGGCCAAGACACACCCATTGAAAAGAGATACCCAGCATTTCCTACAGTTATGGATATTAATCAGATACGTGAAATCTTGCCCCACCGGTTTCCATTTCTTTTAGTGGATAGAGTGATTGAGTACAATCCAGGGGTTTCAGCTGTTGCTATAAAGAATGTGACTATAAATGATAACTTTTTCCCTGGGCACTTCCCAGAGAGGCCTATTATGCCTGGAGTTCTCATGATTGAGGCAATGGCTCAAGTGGGTGGCTTGGTGATGCTGCAACCCGAAGTGGGAGGCTCTCGTGACAGTTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTTAGAAAGCCTGTGATTGCAGGAGACACTTTGGTAATGAGAATGACACTAGTTAAGTTCCAAAAACGGTTTGGAATAGCAAAGATGGAGGGTAAGGCATACGTGGGAGGTGACTTGGTCTGCGAGGGCGAGTTCTTGATGGCGAGTGGGAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
FabA

Protein Analysis

279

Amino Acids

30.81

Weight (kDa)

9.13

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 203
AciI CCGC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 355
AcsI RAATTY 2 cut(s) 18, 108
AfaI GTAC 2 cut(s) 342, 476
AfiI CCNNNNNNNGG 1 cut(s) 629
AgeI ACCGGT 1 cut(s) 438
AgsI TTSAA 2 cut(s) 83, 374
AhlI ACTAGT 1 cut(s) 727
AjnI CCWGG 3 cut(s) 481, 535, 565
AluBI AGCT 1 cut(s) 494
AluI AGCT 1 cut(s) 494
Alw26I GTCTC 3 cut(s) 213, 249, 696
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 3 cut(s) 171, 355, 554
ApeKI GCWGC 1 cut(s) 616
ApoI RAATTY 2 cut(s) 18, 108
AseI ATTAAT 1 cut(s) 411
AsiGI ACCGGT 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 353
AsuHPI GGTGA 4 cut(s) 86, 296, 622, 800
AvaI CYCGRG 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 543
BauI CACGAG 1 cut(s) 639
BbvI GCAGC 1 cut(s) 603
BccI CCATC 2 cut(s) 757, 811
BciT130I CCWGG 3 cut(s) 483, 537, 567
BcoDI GTCTC 3 cut(s) 213, 249, 696
BcuI ACTAGT 1 cut(s) 727
BfaI CTAG 1 cut(s) 728
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 354
BisI GCNGC 1 cut(s) 617
BlsI GCNGC 1 cut(s) 618
Bme1390I CCNGG 3 cut(s) 483, 537, 567
BmeT110I CYCGRG 1 cut(s) 175
BmrFI CCNGG 3 cut(s) 483, 537, 567
BmsI GCATC 1 cut(s) 603
BplI GAGNNNNNCTC 2 cut(s) 219, 251
BpmI CTGGAG 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 579
BsaAI YACGTR 2 cut(s) 422, 781
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 3 cut(s) 482, 535, 536
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse118I RCCGGY 2 cut(s) 353, 438
Bse3DI GCAATG 2 cut(s) 27, 594
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 3 cut(s) 483, 537, 567
BseDI CCNNGG 3 cut(s) 482, 535, 536
BseGI GGATG 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMI GCAATG 2 cut(s) 27, 594
BseMII CTCAG 3 cut(s) 118, 203, 218
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 1 cut(s) 603
BseYI CCCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 3 cut(s) 173, 357, 556
BshTI ACCGGT 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 354, 439
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 3 cut(s) 213, 249, 696
BsnI GGCC 3 cut(s) 173, 357, 556
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 543
Bsp1407I TGTACA 1 cut(s) 340
BspACI CCGC 1 cut(s) 201
BspANI GGCC 3 cut(s) 173, 357, 556
BspCNI CTCAG 3 cut(s) 117, 204, 217
BspHI TCATGA 1 cut(s) 576
BsrBI CCGCTC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 27, 594
BsrFI RCCGGY 2 cut(s) 353, 438
BsrGI TGTACA 1 cut(s) 340
BssAI RCCGGY 2 cut(s) 353, 438
BssECI CCNNGG 3 cut(s) 482, 535, 536
BssSI CACGAG 1 cut(s) 639
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 3 cut(s) 483, 537, 567
Bst4CI ACNGT 3 cut(s) 400, 647, 747
Bst6I CTCTTC 2 cut(s) 220, 323
BstAUI TGTACA 1 cut(s) 340
BstBAI YACGTR 2 cut(s) 422, 781
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 4 cut(s) 46, 104, 204, 212
BstF5I GGATG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 1 cut(s) 353
BstMAI GTCTC 3 cut(s) 213, 249, 696
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstNI CCWGG 3 cut(s) 483, 537, 567
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 3 cut(s) 481, 535, 565
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 603
BsuRI GGCC 3 cut(s) 173, 357, 556
BtsCI GGATG 1 cut(s) 11
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 576
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 2 cut(s) 353, 438
Csp6I GTAC 2 cut(s) 341, 475
CspAI ACCGGT 1 cut(s) 438
CviAII CATG 3 cut(s) 187, 324, 577
CviJI RGCY 8 cut(s) 173, 357, 494, 556, 593, 606, 636, 688
CviKI_1 RGCY 8 cut(s) 173, 357, 494, 556, 593, 606, 636, 688
CviQI GTAC 2 cut(s) 341, 475
DdeI CTNAG 4 cut(s) 46, 104, 204, 212
DraI TTTAAA 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 2 cut(s) 220, 323
EarI CTCTTC 2 cut(s) 220, 323
Eco147I AGGCCT 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 3 cut(s) 481, 535, 565
FaeI CATG 3 cut(s) 190, 327, 580
FaiI YATR 9 cut(s) 188, 284, 325, 404, 503, 518, 563, 578, 778
FatI CATG 3 cut(s) 186, 323, 576
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 617
Fsp4HI GCNGC 1 cut(s) 617
FspBI CTAG 1 cut(s) 728
GlaI GCGC 1 cut(s) 352
GluI GCNGC 1 cut(s) 617
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 3 cut(s) 173, 357, 556
HapII CCGG 2 cut(s) 354, 439
HhaI GCGC 1 cut(s) 353
Hin1II CATG 3 cut(s) 190, 327, 580
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
HinfI GANTC 2 cut(s) 214, 313
HpaII CCGG 2 cut(s) 354, 439
HphI GGTGA 4 cut(s) 86, 296, 622, 800
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 4 cut(s) 107, 213, 249, 417
Hpy188III TCNNGA 3 cut(s) 577, 641, 814
Hpy8I GTNNAC 1 cut(s) 218
HpyCH4III ACNGT 3 cut(s) 400, 647, 747
HpyCH4IV ACGT 2 cut(s) 421, 780
HpyCH4V TGCA 5 cut(s) 32, 139, 619, 659, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 4 cut(s) 46, 104, 204, 212
HpySE526I ACGT 2 cut(s) 421, 780
Hsp92II CATG 3 cut(s) 190, 327, 580
HspAI GCGC 1 cut(s) 351
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 1 cut(s) 603
MaeI CTAG 1 cut(s) 728
MaeII ACGT 2 cut(s) 421, 780
MaeIII GTNAC 3 cut(s) 511, 641, 788
MbiI CCGCTC 1 cut(s) 203
MboII GAAGA 3 cut(s) 237, 310, 643
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 4 cut(s) 18, 108, 273, 663
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 272
MroNI GCCGGC 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 4 cut(s) 116, 294, 411, 732
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 354, 439
MspR9I CCNGG 3 cut(s) 483, 537, 567
MvaI CCWGG 3 cut(s) 483, 537, 567
MwoI GCNNNNNNNGC 1 cut(s) 562
NaeI GCCGGC 1 cut(s) 355
NgoMIV GCCGGC 1 cut(s) 353
NlaIII CATG 3 cut(s) 190, 327, 580
NmuCI GTSAC 3 cut(s) 511, 641, 788
NspI RCATGY 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 175
PagI TCATGA 1 cut(s) 576
PasI CCCWGGG 1 cut(s) 536
PceI AGGCCT 1 cut(s) 556
PdiI GCCGGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 313
PflFI GACNNNGTC 1 cut(s) 794
PinAI ACCGGT 1 cut(s) 438
PkrI GCNGC 1 cut(s) 618
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Ppu21I YACGTR 2 cut(s) 422, 781
PshBI ATTAAT 1 cut(s) 411
Psp6I CCWGG 3 cut(s) 481, 535, 565
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 3 cut(s) 481, 535, 565
PspXI VCTCGAGB 1 cut(s) 175
PsrI GAACNNNNNNTAC 2 cut(s) 222, 254
PstNI CAGNNNCTG 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 794
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 2 cut(s) 342, 476
RsaNI GTAC 2 cut(s) 341, 475
SaqAI TTAA 4 cut(s) 116, 294, 411, 732
SatI GCNGC 1 cut(s) 617
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 3 cut(s) 483, 537, 567
SduI GDGCHC 1 cut(s) 543
SetI ASST 6 cut(s) 254, 424, 496, 680, 783, 790
SfaNI GCATC 1 cut(s) 603
SfcI CTRYAG 1 cut(s) 396
Sfr274I CTCGAG 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 175
SmlI CTYRAG 2 cut(s) 175, 594
SmoI CTYRAG 2 cut(s) 175, 594
SpeI ACTAGT 1 cut(s) 727
Sse9I AATT 4 cut(s) 18, 108, 273, 663
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 728
StuI AGGCCT 1 cut(s) 556
StyD4I CCNGG 3 cut(s) 481, 535, 565
TaaI ACNGT 3 cut(s) 400, 647, 747
TaiI ACGT 2 cut(s) 424, 783
TaqI TCGA 1 cut(s) 176
TasI AATT 4 cut(s) 18, 108, 273, 663
TatI WGTACW 2 cut(s) 340, 474
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 4 cut(s) 116, 294, 411, 732
Tru9I TTAA 4 cut(s) 116, 294, 411, 732
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 3 cut(s) 511, 641, 788
TseI GCWGC 1 cut(s) 616
Tsp45I GTSAC 3 cut(s) 511, 641, 788
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 2 cut(s) 86, 325
TspRI CASTG 1 cut(s) 146
Tth111I GACNNNGTC 1 cut(s) 794
VspI ATTAAT 1 cut(s) 411
XapI RAATTY 2 cut(s) 18, 108
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 746
XhoI CTCGAG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.