AT5G10160

FabA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007315
Physical Location & Seq
Forward (+)
3185734 .. 3187312
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10160.1

Sequence Viewer

Length: 660 bp
ATGGCTGCTTCAAGCTCCGTTTTCACAGTATCCCCGTCGCGAAATCTTGCAGCTATTCCTCTTCATCAGTCCCTATCTCCACCGTTGCTTAGATCCAGCTCCGTCGCGTTTCGTCCCAAACGAAGATCCAGCTCACTCGTCTTATGCTCAACTGATGAATCAAAGAGCACCGCAGAGAAAGAGATCCCAATCGAACTAAGGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATCTGCGGTAGCTATTAAAAACGTTACCATTAATGACAATTTCTTTCCTGGGCATTTCCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAGGCAATGGCTCAAGTGGGAGGTATAGTGATGCTACAACCAGAAGTTGGCGGATCTAGAAGCAACTTCTTCTTTGCTGGAATCGACAAAGTCAGATTCAGGAAGCCAGTGATTGCAGGTGATACGCTGGTGATGAGGATGACACTTGTGAAGTTGCAGAAGCGGTTTGGGATAGCGAAAATGGAAGGGAAAGCATATGTAGGGAACTCTGTGGTATGTGAAGGAGAGTTCTTGATGGCTATGGGAAAAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
FabA

Protein Analysis

219

Amino Acids

24.12

Weight (kDa)

9.33

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ApeP-like PF22817 79 - 183 3.2e-06 ApeP dehydratase
FabA PF07977 84 - 209 1.2e-33 FabA-like domain
ApeI-like PF22818 105 - 199 8.3e-14 ApeI dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 449
AccII CGCG 2 cut(s) 40, 107
AciI CCGC 4 cut(s) 171, 314, 453, 565
AclI AACGTT 1 cut(s) 330
AclWI GGATC 4 cut(s) 87, 120, 178, 463
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 1 cut(s) 12
AjnI CCWGG 2 cut(s) 355, 385
AluBI AGCT 6 cut(s) 15, 53, 99, 132, 302, 320
AluI AGCT 6 cut(s) 15, 53, 99, 132, 302, 320
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 4 cut(s) 87, 120, 178, 463
ApeKI GCWGC 2 cut(s) 5, 50
AseI ATTAAT 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 533, 544
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 217, 631
BciT130I CCWGG 2 cut(s) 357, 387
BciVI GTATCC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 509
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 2 cut(s) 6, 51
BlsI GCNGC 2 cut(s) 7, 52
Bme1390I CCNGG 2 cut(s) 357, 387
BmrFI CCNGG 2 cut(s) 357, 387
BmsI GCATC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 399
BsaBI GATNNNNATC 2 cut(s) 188, 227
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 1 cut(s) 509
Bse3DI GCAATG 1 cut(s) 414
Bse8I GATNNNNATC 2 cut(s) 188, 227
BseBI CCWGG 2 cut(s) 357, 387
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 546
BseJI GATNNNNATC 2 cut(s) 188, 227
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 2 cut(s) 40, 107
BsiHKAI GWGCWC 1 cut(s) 170
BslFI GGGAC 2 cut(s) 55, 99
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 55, 99
Bso31I GGTCTC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 4 cut(s) 92, 125, 183, 455
Bsp68I TCGCGA 1 cut(s) 40
BspACI CCGC 4 cut(s) 171, 314, 453, 565
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 2 cut(s) 40, 107
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 4 cut(s) 87, 120, 178, 463
BspTNI GGTCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 414
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 4 cut(s) 92, 125, 183, 455
Bst2UI CCWGG 2 cut(s) 357, 387
Bst4CI ACNGT 3 cut(s) 28, 84, 220
Bst6I CTCTTC 2 cut(s) 66, 648
BstDEI CTNAG 3 cut(s) 89, 197, 369
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 2 cut(s) 40, 107
BstKTI GATC 4 cut(s) 95, 128, 186, 458
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 4 cut(s) 92, 125, 183, 455
BstNI CCWGG 2 cut(s) 357, 387
BstSCI CCNGG 2 cut(s) 355, 385
BstUI CGCG 2 cut(s) 40, 107
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 4 cut(s) 92, 125, 183, 455
BstYI RGATCY 4 cut(s) 92, 125, 183, 455
BsuI GTATCC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 225, 516
BtuMI TCGCGA 1 cut(s) 40
BveI ACCTGC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 397
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 3 cut(s) 89, 197, 369
DpnI GATC 4 cut(s) 94, 127, 185, 457
DpnII GATC 4 cut(s) 92, 125, 183, 455
Eam1104I CTCTTC 2 cut(s) 66, 648
EarI CTCTTC 2 cut(s) 66, 648
EciI GGCGGA 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 355, 385
FaeI CATG 1 cut(s) 400
FaiI YATR 9 cut(s) 145, 204, 380, 398, 428, 598, 600, 619, 644
FaqI GGGAC 2 cut(s) 55, 99
FatI CATG 1 cut(s) 396
FauNDI CATATG 1 cut(s) 598
Fnu4HI GCNGC 2 cut(s) 6, 51
FokI GGATG 1 cut(s) 553
Fsp4HI GCNGC 2 cut(s) 6, 51
FspBI CTAG 1 cut(s) 459
GluI GCNGC 2 cut(s) 6, 51
GsuI CTGGAG 1 cut(s) 408
Hin1II CATG 1 cut(s) 400
HinfI GANTC 4 cut(s) 158, 261, 483, 498
HphI GGTGA 2 cut(s) 533, 544
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 216, 497
Hpy188III TCNNGA 4 cut(s) 39, 459, 502, 634
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 2 cut(s) 40, 107
HpyAV CCTTC 2 cut(s) 581, 617
HpyCH4III ACNGT 3 cut(s) 28, 84, 220
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 3 cut(s) 50, 518, 559
HpyF3I CTNAG 3 cut(s) 89, 197, 369
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 1 cut(s) 400
Kzo9I GATC 4 cut(s) 92, 125, 183, 455
LmnI GCTCC 2 cut(s) 20, 104
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 331
MalI GATC 4 cut(s) 94, 127, 185, 457
MboI GATC 4 cut(s) 92, 125, 183, 455
MboII GAAGA 3 cut(s) 53, 135, 463
MflI RGATCY 4 cut(s) 92, 125, 183, 455
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 6 cut(s) 69, 199, 264, 397, 416, 531
MseI TTAA 2 cut(s) 324, 339
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 357, 387
MvaI CCWGG 2 cut(s) 357, 387
MvnI CGCG 2 cut(s) 40, 107
NdeI CATATG 1 cut(s) 598
NdeII GATC 4 cut(s) 92, 125, 183, 455
NlaIII CATG 1 cut(s) 400
NruI TCGCGA 1 cut(s) 40
PaqCI CACCTGC 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 4 cut(s) 158, 261, 483, 498
PflFI GACNNNGTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 2 cut(s) 7, 52
PshBI ATTAAT 1 cut(s) 339
Psp1406I AACGTT 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 355, 385
PspGI CCWGG 2 cut(s) 355, 385
PsuI RGATCY 4 cut(s) 92, 125, 183, 455
PsyI GACNNNGTC 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 302
RruI TCGCGA 1 cut(s) 40
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 324, 339
SatI GCNGC 2 cut(s) 6, 51
Sau3AI GATC 4 cut(s) 92, 125, 183, 455
ScrFI CCNGG 2 cut(s) 357, 387
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 1 cut(s) 346
SsiI CCGC 4 cut(s) 171, 314, 453, 565
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 355, 385
TaaI ACNGT 3 cut(s) 28, 84, 220
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 192, 486
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 4 cut(s) 158, 261, 483, 498
Tru1I TTAA 2 cut(s) 324, 339
Tru9I TTAA 2 cut(s) 324, 339
TscAI CASTG 2 cut(s) 225, 516
TseI GCWGC 2 cut(s) 5, 50
TspDTI ATGAA 2 cut(s) 53, 171
TspGWI ACGGA 2 cut(s) 7, 91
TspRI CASTG 2 cut(s) 225, 516
Tth111I GACNNNGTC 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 449
VspI ATTAAT 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 458
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.