AT2G22310

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010882
Physical Location & Seq
Reverse (-)
9476578 .. 9478959
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22310.1

Sequence Viewer

Length: 1098 bp
ATGGGCGCGGCGGGGTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCGGAAGGAGAACGATACTTCGGTTTCGAAAATTTCGGCAACACTTGTTACTGTAACAGTGTTTTGCAGGCTCTTTATTTTTGTGCTCCCTTTCGTGAACAATTGCTTGAACATTATGCAAATAATAAAGCTGATGCTGAGGAGAATCTCTTGACCTGCTTGGCTGACTTATTTTCGCAGATAAGTTCCCAGAAGAAGAAAACAGGAGTTATCGCTCCGAAGCGCTTTGTGCAAAGGTTGAAGAAACAGAATGAGCTTTTCCGGAGTTATATGCATCAGGATGCACATGAGTTCCTGAATTATTTGCTAAATGAACTTGTTGAGATCTTAGAGAAAGAGACACAAGCCACAAAAGCAGACAATGAAACTTCATCATCTCCTGAAAAGATTGCAAATGTACTGAAAGCTCCCCTGGCAAATGGTGTTCATAAAGAGCCAATTGTTACTTGGGTGCACAAGATTTTTCAGGGTATACTTACCAACGAGACAAGGTGTCTACGGTGTGAGACAGTAACAGCAAGAGATGAAACTTTCCTAGACCTGAGCCTTGATATTGAACAGAACAGTTCGATAACTAGCTGTTTGAAAAACTTCAGCTCCACAGAGACTCTACATGCAGAAGACAAGTTTTTCTGTGACAAATGCTGCAGTTTACAAGAAGCGCAGAAGAGAATGAAGATTAAGAAACCGCCACACATCTTAGTTATACATCTGAAACGGTTCAAATACATGGAACAGTTGGGCCGCTACAAGAAGCTATCGTACAGAGTCGTCTTCCCTCTGGAACTGAAACTCAGCAACACAGTGGATGAATATGTGGACATTGAGTACTCTCTCTTTGCAGTCGTGGTTCATGTCGGAAGTGGACCTAACCACGGTCATTATGTTAGCCTCGTGAAATCCCATAACCACTGGCTCTTCTTTGATGATGAGAGTGTCGAAATAATTGAAGAATCTGCTGTTCAAACATTCTTCGGTTCATCGCAAGAGTACTCAAGTAATACTGATCATGGCTACATCTTGTTATACGAGAGCCTCGGAACAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

365

Amino Acids

41.85

Weight (kDa)

5.98

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 24 - 359 3.9e-67 Ubiquitin carboxyl-terminal hydrolase
UCH_1 PF13423 24 - 329 1.7e-28 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22310 AT2G22310 AT2G22310 AT4G39910
fragaria_vesca FvH4_1g20720
malus_domestica MD01G1031200.v1.1 MD15G1318500.v1.1
prunus_persica Prupe.6G187800_v2.0.a1
pyrus_communis pycom01g05860 pycom15g28490
rosa_chinensis RchiOBHm_Chr2g0113231
rosa_laevigata RLG00000018049
rosa_multiflora Rmu_sc0006838.1_g000020 Rmu_sc0008490.1_g000004
rosa_roxburghii Rroxscaffold_2G00129520 Rroxscaffold_2G00129770
rosa_rugosa Rorug02G0186000
rosa_samantha Rh2CG244600 Rh2DG248500
rosa_wichuraiana Rw2G018810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
AccI GTMKAC 2 cut(s) 520, 544
AccII CGCG 1 cut(s) 8
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 4 cut(s) 8, 11, 737, 793
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 625
AfaI GTAC 4 cut(s) 447, 812, 878, 1040
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 49, 923
AgsI TTSAA 7 cut(s) 158, 289, 605, 634, 772, 998, 1013
AhdI GACNNNNNGTC 1 cut(s) 540
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 7 cut(s) 32, 179, 304, 455, 627, 645, 805
AluI AGCT 7 cut(s) 32, 179, 304, 455, 627, 645, 805
Alw21I GWGCWC 2 cut(s) 136, 504
Alw26I GTCTC 4 cut(s) 380, 527, 548, 647
Alw44I GTGCAC 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 309
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 1 cut(s) 790
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 1 cut(s) 693
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 2 cut(s) 638, 767
AspLEI GCGC 3 cut(s) 8, 273, 712
AspS9I GGNCC 3 cut(s) 15, 790, 914
AsuC2I CCSGG 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 15, 914
BaeGI GKGCMC 1 cut(s) 504
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
BauI CACGAG 1 cut(s) 941
BbsI GAAGAC 2 cut(s) 675, 814
Bbv12I GWGCWC 2 cut(s) 136, 504
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 680
BciT130I CCWGG 1 cut(s) 461
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 4 cut(s) 380, 527, 548, 647
BfaI CTAG 2 cut(s) 584, 624
BfmI CTRYAG 1 cut(s) 694
BfoI RGCGCY 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 212
BglII AGATCT 1 cut(s) 372
BisI GCNGC 3 cut(s) 9, 694, 793
BlsI GCNGC 3 cut(s) 10, 695, 794
BmcAI AGTACT 2 cut(s) 878, 1040
Bme1390I CCNGG 2 cut(s) 50, 461
Bme18I GGWCC 2 cut(s) 15, 914
BmeRI GACNNNNNGTC 1 cut(s) 540
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 15, 790, 914
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 50, 461
BmsI GCATC 3 cut(s) 172, 319, 331
BpiI GAAGAC 2 cut(s) 675, 814
Bpu10I CCTNAGC 2 cut(s) 186, 590
Bpu14I TTCGAA 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 1027
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 459, 922, 1084
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 923
Bse1I ACTGG 2 cut(s) 43, 965
BseAI TCCGGA 1 cut(s) 309
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 3 cut(s) 459, 922, 1084
BseGI GGATG 2 cut(s) 334, 862
BseLI CCNNNNNNNGG 2 cut(s) 49, 923
BseMII CTCAG 3 cut(s) 177, 581, 856
BseNI ACTGG 2 cut(s) 43, 965
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 1 cut(s) 680
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 792
BsiHKAI GWGCWC 2 cut(s) 136, 504
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 50, 310
BslI CCNNNNNNNGG 2 cut(s) 49, 923
BsmAI GTCTC 4 cut(s) 380, 527, 548, 647
BsnI GGCC 1 cut(s) 792
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 136, 504
Bsp13I TCCGGA 1 cut(s) 309
Bsp143I GATC 2 cut(s) 372, 1054
BspACI CCGC 4 cut(s) 8, 11, 737, 793
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 3 cut(s) 178, 582, 855
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 698
BspMI ACCTGC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 971
BspT104I TTCGAA 1 cut(s) 75
BsrI ACTGG 2 cut(s) 43, 965
BssECI CCNNGG 3 cut(s) 459, 922, 1084
BssMI GATC 2 cut(s) 372, 1054
BssNAI GTATAC 1 cut(s) 521
BssSI CACGAG 1 cut(s) 941
Bst1107I GTATAC 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 941
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 9 cut(s) 101, 107, 549, 559, 614, 768, 786, 853, 926
Bst6I CTCTTC 2 cut(s) 710, 971
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 5 cut(s) 186, 376, 590, 748, 842
BstDSI CCRYGG 1 cut(s) 922
BstF5I GGATG 2 cut(s) 334, 862
BstFNI CGCG 1 cut(s) 8
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 3 cut(s) 8, 273, 712
BstKTI GATC 2 cut(s) 375, 1057
BstMAI GTCTC 4 cut(s) 380, 527, 548, 647
BstMBI GATC 2 cut(s) 372, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 277, 401, 461
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 2 cut(s) 48, 459
BstSFI CTRYAG 1 cut(s) 694
BstSLI GKGCMC 1 cut(s) 504
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 2 cut(s) 675, 814
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 521
BsuRI GGCC 1 cut(s) 792
BtgI CCRYGG 1 cut(s) 922
BtgZI GCGATG 1 cut(s) 1014
BtsCI GGATG 2 cut(s) 334, 862
BtsIMutI CAGTG 3 cut(s) 112, 858, 958
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 3 cut(s) 8, 273, 712
Cfr13I GGNCC 3 cut(s) 15, 790, 914
Csp6I GTAC 4 cut(s) 446, 811, 877, 1039
CviAII CATG 5 cut(s) 335, 662, 778, 902, 1058
CviQI GTAC 4 cut(s) 446, 811, 877, 1039
DdeI CTNAG 5 cut(s) 186, 376, 590, 748, 842
DpnI GATC 2 cut(s) 374, 1056
DpnII GATC 2 cut(s) 372, 1054
DriI GACNNNNNGTC 1 cut(s) 540
Eam1104I CTCTTC 2 cut(s) 710, 971
Eam1105I GACNNNNNGTC 1 cut(s) 540
EarI CTCTTC 2 cut(s) 710, 971
Eco47I GGWCC 2 cut(s) 15, 914
Eco47III AGCGCT 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 625
Eco88I CYCGRG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 324
FaeI CATG 5 cut(s) 338, 665, 781, 905, 1061
FatI CATG 5 cut(s) 334, 661, 777, 901, 1057
FauI CCCGC 1 cut(s) 4
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 2 cut(s) 520, 544
Fnu4HI GCNGC 3 cut(s) 9, 694, 793
FokI GGATG 2 cut(s) 341, 869
Fsp4HI GCNGC 3 cut(s) 9, 694, 793
FspBI CTAG 2 cut(s) 584, 624
GlaI GCGC 3 cut(s) 7, 272, 711
GluI GCNGC 3 cut(s) 9, 694, 793
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 1 cut(s) 792
HapII CCGG 2 cut(s) 50, 310
HhaI GCGC 3 cut(s) 8, 273, 712
Hin1II CATG 5 cut(s) 338, 665, 781, 905, 1061
Hin6I GCGC 3 cut(s) 6, 271, 710
HinP1I GCGC 3 cut(s) 6, 271, 710
HinfI GANTC 4 cut(s) 193, 655, 816, 1001
HpaII CCGG 2 cut(s) 50, 310
Hpy166II GTNNAC 7 cut(s) 146, 502, 521, 545, 701, 868, 914
Hpy188I TCNGA 4 cut(s) 267, 762, 908, 1088
Hpy188III TCNNGA 9 cut(s) 25, 143, 199, 310, 326, 343, 428, 830, 943
Hpy8I GTNNAC 7 cut(s) 146, 502, 521, 545, 701, 868, 914
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 9 cut(s) 101, 107, 549, 559, 614, 768, 786, 853, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 401, 461
HpyF3I CTNAG 5 cut(s) 186, 376, 590, 748, 842
Hsp92II CATG 5 cut(s) 338, 665, 781, 905, 1061
HspAI GCGC 3 cut(s) 6, 271, 710
Kpn2I TCCGGA 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 2 cut(s) 372, 1054
LguI GCTCTTC 1 cut(s) 971
LmnI GCTCC 4 cut(s) 139, 268, 460, 650
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 3 cut(s) 172, 319, 331
MaeI CTAG 2 cut(s) 584, 624
MaeIII GTNAC 5 cut(s) 95, 101, 490, 559, 683
MalI GATC 2 cut(s) 374, 1056
MboI GATC 2 cut(s) 372, 1054
MfeI CAATTG 2 cut(s) 149, 486
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 136, 504
MluCI AATT 5 cut(s) 79, 149, 346, 486, 993
MlyI GAGTC 2 cut(s) 649, 825
MmeI TCCRAC 1 cut(s) 886
MnlI CCTC 4 cut(s) 181, 837, 950, 1094
Mph1103I ATGCAT 1 cut(s) 324
MroI TCCGGA 1 cut(s) 309
MroXI GAANNNNTTC 2 cut(s) 638, 767
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 1 cut(s) 327
MspI CCGG 2 cut(s) 50, 310
MspR9I CCNGG 2 cut(s) 50, 461
MunI CAATTG 2 cut(s) 149, 486
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 277, 401, 461
NciI CCSGG 1 cut(s) 50
NdeII GATC 2 cut(s) 372, 1054
NlaIII CATG 5 cut(s) 338, 665, 781, 905, 1061
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 683
NsiI ATGCAT 1 cut(s) 324
NspI RCATGY 1 cut(s) 665
NspV TTCGAA 1 cut(s) 75
PaeR7I CTCGAG 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 971
PdmI GAANNNNTTC 2 cut(s) 638, 767
PfeI GAWTC 2 cut(s) 193, 1001
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 3 cut(s) 10, 695, 794
PleI GAGTC 2 cut(s) 649, 824
PpsI GAGTC 2 cut(s) 649, 824
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 3 cut(s) 15, 790, 914
PstI CTGCAG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 4 cut(s) 447, 812, 878, 1040
RsaNI GTAC 4 cut(s) 446, 811, 877, 1039
RseI CAYNNNNRTG 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 971
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 3 cut(s) 9, 694, 793
Sau3AI GATC 2 cut(s) 372, 1054
Sau96I GGNCC 3 cut(s) 15, 790, 914
ScaI AGTACT 2 cut(s) 878, 1040
SchI GAGTC 2 cut(s) 649, 825
ScrFI CCNGG 2 cut(s) 50, 461
SduI GDGCHC 2 cut(s) 136, 504
SfaNI GCATC 3 cut(s) 172, 319, 331
SfcI CTRYAG 1 cut(s) 694
Sfr274I CTCGAG 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 75
SinI GGWCC 2 cut(s) 15, 914
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 23, 1042
SmoI CTYRAG 2 cut(s) 23, 1042
Sse9I AATT 5 cut(s) 79, 149, 346, 486, 993
SsiI CCGC 4 cut(s) 8, 11, 737, 793
SspMI CTAG 2 cut(s) 584, 624
StyD4I CCNGG 2 cut(s) 48, 459
TaaI ACNGT 9 cut(s) 101, 107, 549, 559, 614, 768, 786, 853, 926
TaqI TCGA 4 cut(s) 24, 75, 617, 987
TasI AATT 5 cut(s) 79, 149, 346, 486, 993
TatI WGTACW 3 cut(s) 445, 876, 1038
TauI GCSGC 2 cut(s) 11, 795
TfiI GAWTC 2 cut(s) 193, 1001
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 3 cut(s) 112, 858, 965
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 1 cut(s) 693
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 9 cut(s) 375, 408, 426, 464, 588, 737, 873, 890, 1017
TspRI CASTG 3 cut(s) 112, 858, 965
VneI GTGCAC 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 15, 914
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XhoI CTCGAG 1 cut(s) 23
XmiI GTMKAC 2 cut(s) 520, 544
XmnI GAANNNNTTC 2 cut(s) 638, 767
XspI CTAG 2 cut(s) 584, 624
ZrmI AGTACT 2 cut(s) 878, 1040
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.