pycom15g28490

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010882
Physical Location & Seq
Forward (+)
24532370 .. 24536565
4196 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28490.5

Sequence Viewer

Length: 1116 bp
ATGGGTGCTGCGGGGTCCAAACTCGAGAAGGCTCTCGGCGACCAGTTTCCGGAAGGCGAGCGATACTTTGGACTCGAGAATTTCGGCAATACTTGCTATTGTAACAGCGTTTTGCAGGCACTTTATTTTTGTGTTCCATTTCGCGAGCAGTTGCTAGAATACTATTCCAGCAACAAAAGTGCTGGGGATGCAGAAGAAAATCTCTTGACATGCTTAGCAGACTTGTTTACACAGATAAGTTCACAAAAGAAGAAAACAGGCGTCATTGCTCCAAAGCGTTTCGTACAAAGATTGAAGAAACAAAATGAGCTTTTCCGTAGCTATATGCACCAGGATGCTCATGAATTCTTAAATTTTTTGTTAAATGAACTTGTCGACATACTGGAGAAAGAAGCCCAAGCTGCAAAAAGTGATCAAGAAACTACTTCACCTCCTGAAAAAATGGGAAATGGTCTGAAGAATGTTCAGGCCAATGGTACTCATAAAGATCCCTTGGTTACCTGGGTGCACAAAAATTTTCAAGGTATACTCACCAATGAAACAAGGTGCCTACGGTGTGAGACAGTGACTGCAAGAGATGAAATATTTTTGGACTTGAGCCTGGATATTGAACAGAACAGTTCAAAAACGAGCTGTTTGAAAAGCTTCAGTTCCACAGAGACGTCAAATGCCGAGGACAAATTTTTTTGCGACAAGTGTTGCAGGATATTTTTGCAAGAAGCGCAGAAGAGGATGAAGATAAAAAAGCCACCTCACATCCTGGTCATCCATCTTAAACGGTTTAAGTACATCGAGCAGCTTGGCCGTTACAAGAAGCTATCTTATCGGGTTGTATTCCCGCTAGAGCTGAAGCTGAGTAACACAGTTGAGGATGCAGAATCTGAGTATTCTCTATTTGCTGTGGTTGTCCATGTTGGCAGCGGGCCAAACCATGGACACTATGTTAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGATGAAAATGTGGAAATGATTGATGAGTCTGCAGTGCAAACTTTCTTCGGATCAGCACAGGAGTATTCAAGTAACACAGATCATGGATACATCTTGTTCTACGAGAGCCTCGGCACCAGTAACAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

372

Amino Acids

42.36

Weight (kDa)

6.09

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22310 AT2G22310 AT2G22310 AT4G39910
fragaria_vesca FvH4_1g20720
malus_domestica MD01G1031200.v1.1 MD15G1318500.v1.1
prunus_persica Prupe.6G187800_v2.0.a1
pyrus_communis pycom01g05860 pycom15g28490
rosa_chinensis RchiOBHm_Chr2g0113231
rosa_laevigata RLG00000018049
rosa_multiflora Rmu_sc0006838.1_g000020 Rmu_sc0008490.1_g000004
rosa_roxburghii Rroxscaffold_2G00129520 Rroxscaffold_2G00129770
rosa_rugosa Rorug02G0186000
rosa_samantha Rh2CG244600 Rh2DG248500
rosa_wichuraiana Rw2G018810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 665
AccB1I GGYRCC 2 cut(s) 546, 1097
AccB7I CCANNNNNTGG 1 cut(s) 932
AccI GTMKAC 2 cut(s) 375, 526
AccII CGCG 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 3 cut(s) 11, 839, 921
AclWI GGATC 2 cut(s) 482, 1042
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 5 cut(s) 79, 344, 352, 514, 680
AcuI CTGAAG 3 cut(s) 476, 631, 869
AcyI GRCGYC 2 cut(s) 261, 662
AfaI GTAC 3 cut(s) 285, 478, 788
AfiI CCNNNNNNNGG 2 cut(s) 49, 932
AgsI TTSAA 6 cut(s) 295, 521, 611, 624, 640, 1053
AjnI CCWGG 4 cut(s) 330, 500, 600, 759
AluBI AGCT 9 cut(s) 310, 321, 401, 633, 645, 799, 817, 847, 853
AluI AGCT 9 cut(s) 310, 321, 401, 633, 645, 799, 817, 847, 853
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 2 cut(s) 554, 653
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 2 cut(s) 482, 1042
AlwNI CAGNNNCTG 2 cut(s) 569, 881
Ama87I CYCGRG 2 cut(s) 23, 74
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 3 cut(s) 468, 802, 923
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 4 cut(s) 8, 401, 796, 918
ApoI RAATTY 5 cut(s) 79, 344, 352, 514, 680
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 2 cut(s) 15, 923
AsuHPI GGTGA 2 cut(s) 420, 523
AvaI CYCGRG 2 cut(s) 23, 74
AvaII GGWCC 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 510
BanI GGYRCC 2 cut(s) 546, 1097
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 388, 808, 930
BccI CCATC 1 cut(s) 777
BceAI ACGGC 1 cut(s) 789
BciT130I CCWGG 4 cut(s) 332, 502, 602, 761
BciVI GTATCC 1 cut(s) 1064
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 554, 653
BfaI CTAG 2 cut(s) 155, 842
BfmI CTRYAG 1 cut(s) 1014
BfuI GTATCC 1 cut(s) 1064
BisI GCNGC 4 cut(s) 9, 402, 797, 919
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 4 cut(s) 10, 403, 798, 920
Bme1390I CCNGG 4 cut(s) 332, 502, 602, 761
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 2 cut(s) 23, 74
BmgT120I GGNCC 2 cut(s) 15, 923
BmiI GGNNCC 3 cut(s) 16, 548, 1099
BmrFI CCNGG 4 cut(s) 332, 502, 602, 761
BmsI GCATC 3 cut(s) 178, 325, 862
BpmI CTGGAG 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 616
BsaHI GRCGYC 2 cut(s) 261, 662
BsaJI CCNNGG 5 cut(s) 492, 501, 672, 931, 1093
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 932
Bse1I ACTGG 4 cut(s) 43, 387, 974, 1101
Bse3DI GCAATG 1 cut(s) 264
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 4 cut(s) 332, 502, 602, 761
BseDI CCNNGG 5 cut(s) 492, 501, 672, 931, 1093
BseGI GGATG 6 cut(s) 193, 340, 738, 756, 765, 877
BseLI CCNNNNNNNGG 2 cut(s) 49, 932
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 845, 873
BseNI ACTGG 4 cut(s) 43, 387, 974, 1101
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 3 cut(s) 388, 808, 930
BseYI CCCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 470, 804, 925
BshNI GGYRCC 2 cut(s) 546, 1097
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 2 cut(s) 23, 74
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 49, 932
BsmAI GTCTC 2 cut(s) 554, 653
BsmBI CGTCTC 1 cut(s) 653
BsnI GGCC 3 cut(s) 470, 804, 925
BsoBI CYCGRG 2 cut(s) 23, 74
Bsp1286I GDGCHC 1 cut(s) 510
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 4 cut(s) 412, 487, 1034, 1063
Bsp1720I GCTNAGC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 931
Bsp68I TCGCGA 1 cut(s) 144
BspACI CCGC 3 cut(s) 11, 839, 921
BspANI GGCC 3 cut(s) 470, 804, 925
BspCNI CTCAG 2 cut(s) 846, 874
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 16, 548, 1099
BspMAI CTGCAG 1 cut(s) 1018
BspPI GGATC 2 cut(s) 482, 1042
BspT107I GGYRCC 2 cut(s) 546, 1097
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 4 cut(s) 43, 387, 974, 1101
BssECI CCNNGG 5 cut(s) 492, 501, 672, 931, 1093
BssMI GATC 4 cut(s) 412, 487, 1034, 1063
BssNAI GTATAC 1 cut(s) 527
BssNI GRCGYC 2 cut(s) 261, 662
BssT1I CCWWGG 2 cut(s) 492, 931
Bst1107I GTATAC 1 cut(s) 527
Bst2UI CCWGG 4 cut(s) 332, 502, 602, 761
Bst4CI ACNGT 5 cut(s) 555, 565, 620, 780, 865
Bst6I CTCTTC 1 cut(s) 722
BstACI GRCGYC 2 cut(s) 261, 662
BstAPI GCANNNNNTGC 1 cut(s) 93
BstC8I GCNNGC 4 cut(s) 59, 117, 146, 923
BstDEI CTNAG 3 cut(s) 214, 854, 882
BstDSI CCRYGG 1 cut(s) 931
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 6 cut(s) 193, 340, 738, 756, 765, 877
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 4 cut(s) 415, 490, 1037, 1066
BstMAI GTCTC 2 cut(s) 554, 653
BstMBI GATC 4 cut(s) 412, 487, 1034, 1063
BstMWI GCNNNNNNNGC 4 cut(s) 93, 188, 401, 721
BstNI CCWGG 4 cut(s) 332, 502, 602, 761
BstNSI RCATGY 1 cut(s) 213
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 4 cut(s) 330, 500, 600, 759
BstSFI CTRYAG 1 cut(s) 1014
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 388, 808, 930
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BstZ17I GTATAC 1 cut(s) 527
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 3 cut(s) 470, 804, 925
BtgI CCRYGG 1 cut(s) 931
BtsCI GGATG 6 cut(s) 193, 340, 738, 756, 765, 877
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 3 cut(s) 570, 967, 1023
BtuMI TCGCGA 1 cut(s) 144
Cac8I GCNNGC 4 cut(s) 59, 117, 146, 923
CaiI CAGNNNCTG 2 cut(s) 569, 881
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 724
Cfr13I GGNCC 2 cut(s) 15, 923
CseI GACGC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 284, 477, 787
CviAII CATG 5 cut(s) 210, 341, 911, 932, 1067
CviQI GTAC 3 cut(s) 284, 477, 787
DdeI CTNAG 3 cut(s) 214, 854, 882
DpnI GATC 4 cut(s) 414, 489, 1036, 1065
DpnII GATC 4 cut(s) 412, 487, 1034, 1063
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 722
EarI CTCTTC 1 cut(s) 722
Eco130I CCWWGG 2 cut(s) 492, 931
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 3 cut(s) 476, 631, 869
Eco88I CYCGRG 2 cut(s) 23, 74
Eco91I GGTNACC 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 4 cut(s) 330, 500, 600, 759
EcoT14I CCWWGG 2 cut(s) 492, 931
ErhI CCWWGG 2 cut(s) 492, 931
Esp3I CGTCTC 1 cut(s) 653
FaeI CATG 5 cut(s) 213, 344, 914, 935, 1070
FatI CATG 5 cut(s) 209, 340, 910, 931, 1066
FauI CCCGC 3 cut(s) 4, 846, 914
FbaI TGATCA 1 cut(s) 412
FblI GTMKAC 2 cut(s) 375, 526
Fnu4HI GCNGC 4 cut(s) 9, 402, 797, 919
FokI GGATG 6 cut(s) 200, 347, 743, 745, 752, 884
Fsp4HI GCNGC 4 cut(s) 9, 402, 797, 919
FspBI CTAG 2 cut(s) 155, 842
GlaI GCGC 1 cut(s) 723
GluI GCNGC 4 cut(s) 9, 402, 797, 919
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 404
HaeIII GGCC 3 cut(s) 470, 804, 925
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 724
Hin1I GRCGYC 2 cut(s) 261, 662
Hin1II CATG 5 cut(s) 213, 344, 914, 935, 1070
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 643
HinfI GANTC 3 cut(s) 72, 878, 1010
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 420, 523
Hpy166II GTNNAC 5 cut(s) 228, 242, 376, 508, 527
Hpy188I TCNGA 3 cut(s) 456, 883, 1034
Hpy188III TCNNGA 8 cut(s) 25, 50, 76, 143, 205, 341, 416, 434
Hpy8I GTNNAC 5 cut(s) 228, 242, 376, 508, 527
HpyAV CCTTC 2 cut(s) 22, 47
HpyCH4III ACNGT 5 cut(s) 555, 565, 620, 780, 865
HpyCH4IV ACGT 1 cut(s) 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 188, 401, 721
HpyF3I CTNAG 3 cut(s) 214, 854, 882
HpySE526I ACGT 1 cut(s) 662
Hsp92I GRCGYC 2 cut(s) 261, 662
Hsp92II CATG 5 cut(s) 213, 344, 914, 935, 1070
HspAI GCGC 1 cut(s) 722
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 412, 487, 1034, 1063
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 3 cut(s) 388, 808, 930
LweI GCATC 3 cut(s) 178, 325, 862
MaeI CTAG 2 cut(s) 155, 842
MaeII ACGT 1 cut(s) 662
MaeIII GTNAC 7 cut(s) 101, 496, 565, 806, 857, 1055, 1103
MalI GATC 4 cut(s) 414, 489, 1036, 1065
MboI GATC 4 cut(s) 412, 487, 1034, 1063
MboII GAAGA 7 cut(s) 206, 262, 307, 469, 739, 748, 1021
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 5 cut(s) 79, 344, 352, 514, 680
MlyI GAGTC 2 cut(s) 66, 1019
MnlI CCTC 6 cut(s) 441, 667, 723, 762, 862, 1103
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 5 cut(s) 350, 362, 774, 783, 1114
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 921
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 4 cut(s) 332, 502, 602, 761
MvaI CCWGG 4 cut(s) 332, 502, 602, 761
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 93, 188, 401, 721
NcoI CCATGG 1 cut(s) 931
NdeII GATC 4 cut(s) 412, 487, 1034, 1063
NlaIII CATG 5 cut(s) 213, 344, 914, 935, 1070
NlaIV GGNNCC 3 cut(s) 16, 548, 1099
NmeAIII GCCGAG 3 cut(s) 15, 697, 1074
NmuCI GTSAC 1 cut(s) 565
NruI TCGCGA 1 cut(s) 144
NspI RCATGY 1 cut(s) 213
PaeR7I CTCGAG 2 cut(s) 23, 74
PagI TCATGA 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 878
PflMI CCANNNNNTGG 1 cut(s) 932
PkrI GCNGC 4 cut(s) 10, 403, 798, 920
PleI GAGTC 2 cut(s) 66, 1018
PpsI GAGTC 2 cut(s) 66, 1018
Psp6I CCWGG 4 cut(s) 330, 500, 600, 759
PspEI GGTNACC 1 cut(s) 496
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 4 cut(s) 330, 500, 600, 759
PspN4I GGNNCC 3 cut(s) 16, 548, 1099
PspPI GGNCC 2 cut(s) 15, 923
PstI CTGCAG 1 cut(s) 1018
PstNI CAGNNNCTG 2 cut(s) 569, 881
PsuI RGATCY 1 cut(s) 487
RruI TCGCGA 1 cut(s) 144
RsaI GTAC 3 cut(s) 285, 478, 788
RsaNI GTAC 3 cut(s) 284, 477, 787
RseI CAYNNNNRTG 1 cut(s) 333
SalI GTCGAC 1 cut(s) 374
SaqAI TTAA 5 cut(s) 350, 362, 774, 783, 1114
SatI GCNGC 4 cut(s) 9, 402, 797, 919
Sau3AI GATC 4 cut(s) 412, 487, 1034, 1063
Sau96I GGNCC 2 cut(s) 15, 923
SchI GAGTC 2 cut(s) 66, 1019
ScrFI CCNGG 4 cut(s) 332, 502, 602, 761
SduI GDGCHC 1 cut(s) 510
SfaNI GCATC 3 cut(s) 178, 325, 862
SfcI CTRYAG 1 cut(s) 1014
Sfr274I CTCGAG 2 cut(s) 23, 74
SinI GGWCC 1 cut(s) 15
SlaI CTCGAG 2 cut(s) 23, 74
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 23, 74, 595
SmoI CTYRAG 3 cut(s) 23, 74, 595
Sse9I AATT 5 cut(s) 79, 344, 352, 514, 680
SsiI CCGC 3 cut(s) 11, 839, 921
SspI AATATT 1 cut(s) 585
SspMI CTAG 2 cut(s) 155, 842
StyD4I CCNGG 4 cut(s) 330, 500, 600, 759
StyI CCWWGG 2 cut(s) 492, 931
TaaI ACNGT 5 cut(s) 555, 565, 620, 780, 865
TaiI ACGT 1 cut(s) 665
TaqI TCGA 4 cut(s) 24, 75, 375, 792
TasI AATT 5 cut(s) 79, 344, 352, 514, 680
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 1 cut(s) 878
Tru1I TTAA 5 cut(s) 350, 362, 774, 783, 1114
Tru9I TTAA 5 cut(s) 350, 362, 774, 783, 1114
TscAI CASTG 3 cut(s) 570, 974, 1023
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 4 cut(s) 8, 401, 796, 918
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 6 cut(s) 357, 381, 552, 594, 749, 1002
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 3 cut(s) 570, 974, 1023
Van91I CCANNNNNTGG 1 cut(s) 932
VneI GTGCAC 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 5 cut(s) 79, 344, 352, 514, 680
XceI RCATGY 1 cut(s) 213
XhoI CTCGAG 2 cut(s) 23, 74
XmiI GTMKAC 2 cut(s) 375, 526
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 2 cut(s) 155, 842
ZraI GACGTC 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.