Rroxscaffold_2G00129520

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010882
Physical Location & Seq
Reverse (-)
65466940 .. 65471168
4229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129520.1

Sequence Viewer

Length: 1095 bp
ATGGGTGCTGCCGGCTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCCGAAGGCGAGCGATATTTCGGCCTTGAGAATTTCGGCAATACTTGCTATTGTAACAGCGTTTTACAGGCGCTTTATTTTTGCGTTCCATTCCGTGAACAGTTGCTAGAATACTATTCCAACAGTAAGAATATTGGGGATGCAGAAGAAAATCTCTTGACATGCTTAGCCGATTTGTTTACGCAGGAGAAAATAAGTTCACAAAAGAAGAAGACAGGTGTAATTGCCCCAAAGCGTTTCGTACAGAGATTGAAGAAACAAAATGAACTCTTTCGTAGCTACATGCATCAGGATGCTCATGAATTCTTAAACTTTTTGCTAAATGAACTTGTCGACATACTAGAGAAAGAAGCACAAGCTGCAAAAAGTGATCAAGAAACTTCTTCACCTCCTGAGAAGCTGGCAAATGGTCCAAAGAATGCTCAAGCTAATGGTTCTCATAAAGATCCCTTAGGAATACTCACCAATGAAACGAGGTGCTTACGGTGTGAGACAGTGACCGCAAGAGATGAAACATTTTTGGACTTGAGCCTTGATATTGAACAGAACAGTTCAATAACAAGCTGTCTGAAAAACTTCAGTTCCACAGAGACATTGAATGCTGAGGACAAATTTTTTTGCGACAAGTGCTGCAGATGGTTATTACCATTGATCGGCACTGTTGGTGCTTATCTTGGTTGTAATGTTACTGAGATAAGGCTTCAAGCATCTAATCTAGATATTGTTCAAGATTTGCAAGAAGCACAGAAGAGGATGAAGATAAAGAAGCCACCTCACGTTCTGGTCATACATCTGAAGCGGTTCAAGTACATTGAGCAGCTTGGCCGTTACAAAAGCTCTCTTACCGCGTTTGGTCCAAACCATGGACACTATGTTAGCCTTGTGAAAAGCCATAATCACTGGTTATTTTTTGATGACGAAAATGTGGAGATGATTGATGAGTCTGCTGTGCAAACTTTCTTTGGGTCAGCACAGGAGTATTCGAGTAATACAGATCATGGATACATCCTGTTCTACGAAAGCCTGGGCACCAGTAACAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

364

Amino Acids

41.28

Weight (kDa)

5.75

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 23 - 288 5.5e-38 Ubiquitin carboxyl-terminal hydrolase
UCH_1 PF13423 24 - 227 4e-08 Ubiquitin carboxyl-terminal hydrolase
UCH PF00443 302 - 355 1.9e-07 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22310 AT2G22310 AT2G22310 AT4G39910
fragaria_vesca FvH4_1g20720
malus_domestica MD01G1031200.v1.1 MD15G1318500.v1.1
prunus_persica Prupe.6G187800_v2.0.a1
pyrus_communis pycom01g05860 pycom15g28490
rosa_chinensis RchiOBHm_Chr2g0113231
rosa_laevigata RLG00000018049
rosa_multiflora Rmu_sc0006838.1_g000020 Rmu_sc0008490.1_g000004
rosa_roxburghii Rroxscaffold_2G00129520 Rroxscaffold_2G00129770
rosa_rugosa Rorug02G0186000
rosa_samantha Rh2CG244600 Rh2DG248500
rosa_wichuraiana Rw2G018810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1076
AccB7I CCANNNNNTGG 1 cut(s) 911
AccI GTMKAC 1 cut(s) 381
AccII CGCG 1 cut(s) 896
AciI CCGC 3 cut(s) 549, 847, 894
AclWI GGATC 1 cut(s) 488
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 3 cut(s) 79, 350, 659
AcuI CTGAAG 2 cut(s) 610, 863
AfaI GTAC 2 cut(s) 291, 857
AfiI CCNNNNNNNGG 2 cut(s) 701, 911
AgsI TTSAA 7 cut(s) 301, 590, 603, 646, 752, 776, 853
AjnI CCWGG 1 cut(s) 1071
AluBI AGCT 8 cut(s) 32, 327, 407, 448, 476, 612, 868, 885
AluI AGCT 8 cut(s) 32, 327, 407, 448, 476, 612, 868, 885
Alw26I GTCTC 2 cut(s) 533, 632
AlwI GGATC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 2 cut(s) 70, 871
ApeKI GCWGC 4 cut(s) 8, 407, 678, 865
ApoI RAATTY 3 cut(s) 79, 350, 659
Asp700I GAANNNNTTC 3 cut(s) 318, 623, 848
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 458, 902
AsuHPI GGTGA 2 cut(s) 426, 502
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 458, 902
AxyI CCTNAGG 1 cut(s) 499
BaeGI GKGCMC 1 cut(s) 1079
BanI GGYRCC 1 cut(s) 1076
BbsI GAAGAC 1 cut(s) 266
BbvCI CCTCAGC 1 cut(s) 651
BbvI GCAGC 3 cut(s) 394, 665, 877
BccI CCATC 1 cut(s) 678
BceAI ACGGC 1 cut(s) 858
BciT130I CCWGG 1 cut(s) 1073
BciVI GTATCC 1 cut(s) 1043
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 533, 632
BfaI CTAG 3 cut(s) 155, 389, 764
BfmI CTRYAG 1 cut(s) 679
BfoI RGCGCY 1 cut(s) 122
BfuI GTATCC 1 cut(s) 1043
BisI GCNGC 4 cut(s) 9, 408, 679, 866
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 4 cut(s) 10, 409, 680, 867
Bme1390I CCNGG 1 cut(s) 1073
Bme18I GGWCC 2 cut(s) 458, 902
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 458, 902
BmiI GGNNCC 2 cut(s) 16, 1078
BmrFI CCNGG 1 cut(s) 1073
BmsI GCATC 4 cut(s) 178, 331, 343, 764
BpiI GAAGAC 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 651
Bpu1102I GCTNAGC 1 cut(s) 214
BpuEI CTTGAG 3 cut(s) 95, 456, 595
BsaJI CCNNGG 2 cut(s) 910, 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 911
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 3 cut(s) 43, 953, 1080
Bse21I CCTNAGG 1 cut(s) 499
BseBI CCWGG 1 cut(s) 1073
BseDI CCNNGG 2 cut(s) 910, 1072
BseGI GGATG 4 cut(s) 193, 346, 807, 1053
BseLI CCNNNNNNNGG 2 cut(s) 701, 911
BseMII CTCAG 3 cut(s) 432, 642, 729
BseNI ACTGG 3 cut(s) 43, 953, 1080
BseSI GKGCMC 1 cut(s) 1079
BseXI GCAGC 3 cut(s) 394, 665, 877
Bsh1236I CGCG 1 cut(s) 896
BshFI GGCC 2 cut(s) 72, 873
BshNI GGYRCC 1 cut(s) 1076
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 701, 911
BsmAI GTCTC 2 cut(s) 533, 632
BsmI GAATGC 2 cut(s) 472, 652
BsnI GGCC 2 cut(s) 72, 873
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 1079
Bsp143I GATC 4 cut(s) 418, 493, 699, 1042
Bsp1720I GCTNAGC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 910
BspACI CCGC 3 cut(s) 549, 847, 894
BspANI GGCC 2 cut(s) 72, 873
BspCNI CTCAG 3 cut(s) 433, 643, 730
BspFNI CGCG 1 cut(s) 896
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 16, 1078
BspMAI CTGCAG 1 cut(s) 683
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 1076
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 3 cut(s) 43, 953, 1080
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 910, 1072
BssMI GATC 4 cut(s) 418, 493, 699, 1042
BssT1I CCWWGG 1 cut(s) 910
Bst2UI CCWGG 1 cut(s) 1073
Bst4CI ACNGT 6 cut(s) 150, 173, 534, 544, 599, 709
Bst6I CTCTTC 1 cut(s) 791
BstAPI GCANNNNNTGC 2 cut(s) 93, 407
BstC8I GCNNGC 3 cut(s) 13, 59, 450
BstDEI CTNAG 5 cut(s) 214, 441, 499, 651, 738
BstDSI CCRYGG 1 cut(s) 910
BstF5I GGATG 4 cut(s) 193, 346, 807, 1053
BstFNI CGCG 1 cut(s) 896
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 4 cut(s) 421, 496, 702, 1045
BstMAI GTCTC 2 cut(s) 533, 632
BstMBI GATC 4 cut(s) 418, 493, 699, 1042
BstMWI GCNNNNNNNGC 3 cut(s) 93, 407, 675
BstNI CCWGG 1 cut(s) 1073
BstNSI RCATGY 2 cut(s) 213, 334
BstSCI CCNGG 1 cut(s) 1071
BstSFI CTRYAG 1 cut(s) 679
BstSLI GKGCMC 1 cut(s) 1079
BstUI CGCG 1 cut(s) 896
BstV1I GCAGC 3 cut(s) 394, 665, 877
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
Bsu36I CCTNAGG 1 cut(s) 499
BsuI GTATCC 1 cut(s) 1043
BsuRI GGCC 2 cut(s) 72, 873
BtgI CCRYGG 1 cut(s) 910
BtsCI GGATG 4 cut(s) 193, 346, 807, 1053
BtsIMutI CAGTG 3 cut(s) 549, 705, 946
Cac8I GCNNGC 3 cut(s) 13, 59, 450
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 458, 902
Csp6I GTAC 2 cut(s) 290, 856
CviAII CATG 5 cut(s) 210, 331, 347, 911, 1046
CviQI GTAC 2 cut(s) 290, 856
DdeI CTNAG 5 cut(s) 214, 441, 499, 651, 738
DpnI GATC 4 cut(s) 420, 495, 701, 1044
DpnII GATC 4 cut(s) 418, 493, 699, 1042
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 1 cut(s) 791
EarI CTCTTC 1 cut(s) 791
Eco130I CCWWGG 1 cut(s) 910
Eco47I GGWCC 2 cut(s) 458, 902
Eco57I CTGAAG 2 cut(s) 610, 863
Eco81I CCTNAGG 1 cut(s) 499
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 1071
EcoT14I CCWWGG 1 cut(s) 910
EcoT22I ATGCAT 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 910
FaeI CATG 5 cut(s) 213, 334, 350, 914, 1049
FatI CATG 5 cut(s) 209, 330, 346, 910, 1045
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 9, 408, 679, 866
FokI GGATG 4 cut(s) 200, 353, 814, 1040
Fsp4HI GCNGC 4 cut(s) 9, 408, 679, 866
FspBI CTAG 3 cut(s) 155, 389, 764
GlaI GCGC 1 cut(s) 120
GluI GCNGC 4 cut(s) 9, 408, 679, 866
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 72, 873
HapII CCGG 1 cut(s) 12
HhaI GCGC 1 cut(s) 121
Hin1II CATG 5 cut(s) 213, 334, 350, 914, 1049
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 1 cut(s) 989
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 426, 502
Hpy166II GTNNAC 4 cut(s) 146, 228, 248, 382
Hpy188I TCNGA 2 cut(s) 618, 843
Hpy188III TCNNGA 8 cut(s) 25, 205, 338, 347, 422, 440, 764, 776
Hpy8I GTNNAC 4 cut(s) 146, 228, 248, 382
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 6 cut(s) 150, 173, 534, 544, 599, 709
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 6 cut(s) 191, 334, 410, 681, 784, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 407, 675
HpyF3I CTNAG 5 cut(s) 214, 441, 499, 651, 738
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 5 cut(s) 213, 334, 350, 914, 1049
HspAI GCGC 1 cut(s) 119
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 4 cut(s) 418, 493, 699, 1042
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 3 cut(s) 394, 665, 877
LweI GCATC 4 cut(s) 178, 331, 343, 764
MaeI CTAG 3 cut(s) 155, 389, 764
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 5 cut(s) 101, 544, 733, 875, 1082
MalI GATC 4 cut(s) 420, 495, 701, 1044
MboI GATC 4 cut(s) 418, 493, 699, 1042
MboII GAAGA 7 cut(s) 206, 268, 271, 313, 423, 808, 817
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 1079
MluCI AATT 4 cut(s) 79, 270, 350, 659
MlyI GAGTC 1 cut(s) 998
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 5 cut(s) 447, 516, 646, 792, 831
Mph1103I ATGCAT 1 cut(s) 336
MroNI GCCGGC 1 cut(s) 11
MroXI GAANNNNTTC 3 cut(s) 318, 623, 848
MseI TTAA 2 cut(s) 356, 1093
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 1073
Mva1269I GAATGC 2 cut(s) 472, 652
MvaI CCWGG 1 cut(s) 1073
MvnI CGCG 1 cut(s) 896
MwoI GCNNNNNNNGC 3 cut(s) 93, 407, 675
NaeI GCCGGC 1 cut(s) 13
NcoI CCATGG 1 cut(s) 910
NdeII GATC 4 cut(s) 418, 493, 699, 1042
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 5 cut(s) 213, 334, 350, 914, 1049
NlaIV GGNNCC 2 cut(s) 16, 1078
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 336
NspI RCATGY 2 cut(s) 213, 334
PaeR7I CTCGAG 1 cut(s) 23
PagI TCATGA 1 cut(s) 346
PctI GAATGC 2 cut(s) 472, 652
PdiI GCCGGC 1 cut(s) 13
PdmI GAANNNNTTC 3 cut(s) 318, 623, 848
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 4 cut(s) 10, 409, 680, 867
PleI GAGTC 1 cut(s) 997
PpsI GAGTC 1 cut(s) 997
Psp6I CCWGG 1 cut(s) 1071
PspGI CCWGG 1 cut(s) 1071
PspN4I GGNNCC 2 cut(s) 16, 1078
PspPI GGNCC 2 cut(s) 458, 902
PstI CTGCAG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 2 cut(s) 291, 857
RsaNI GTAC 2 cut(s) 290, 856
RseI CAYNNNNRTG 1 cut(s) 339
SalI GTCGAC 1 cut(s) 380
SaqAI TTAA 2 cut(s) 356, 1093
SatI GCNGC 4 cut(s) 9, 408, 679, 866
Sau3AI GATC 4 cut(s) 418, 493, 699, 1042
Sau96I GGNCC 2 cut(s) 458, 902
SchI GAGTC 1 cut(s) 998
ScrFI CCNGG 1 cut(s) 1073
SduI GDGCHC 1 cut(s) 1079
SfaNI GCATC 4 cut(s) 178, 331, 343, 764
SfcI CTRYAG 1 cut(s) 679
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 2 cut(s) 458, 902
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 4 cut(s) 23, 74, 471, 574
SmoI CTYRAG 4 cut(s) 23, 74, 471, 574
Sse9I AATT 4 cut(s) 79, 270, 350, 659
SsiI CCGC 3 cut(s) 549, 847, 894
SspI AATATT 1 cut(s) 181
SspMI CTAG 3 cut(s) 155, 389, 764
StyD4I CCNGG 1 cut(s) 1071
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 6 cut(s) 150, 173, 534, 544, 599, 709
TaiI ACGT 1 cut(s) 828
TaqI TCGA 3 cut(s) 24, 381, 1031
TasI AATT 4 cut(s) 79, 270, 350, 659
TatI WGTACW 1 cut(s) 855
Tru1I TTAA 2 cut(s) 356, 1093
Tru9I TTAA 2 cut(s) 356, 1093
TscAI CASTG 3 cut(s) 549, 712, 953
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 4 cut(s) 8, 407, 678, 865
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 6 cut(s) 327, 363, 387, 531, 573, 818
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 3 cut(s) 549, 712, 953
Van91I CCANNNNNTGG 1 cut(s) 911
VpaK11BI GGWCC 2 cut(s) 458, 902
XapI RAATTY 3 cut(s) 79, 350, 659
XbaI TCTAGA 1 cut(s) 763
XceI RCATGY 2 cut(s) 213, 334
XhoI CTCGAG 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 3 cut(s) 318, 623, 848
XspI CTAG 3 cut(s) 155, 389, 764
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.