pycom01g05860

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010882
Physical Location & Seq
Reverse (-)
5784026 .. 5789902
5877 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05860.3

Sequence Viewer

Length: 1173 bp
ATGGGTGCTGCGGGCTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTTCCGGAAGGCGAGCGATATTTCGGACTCGAGAATTTCGGCAATACTTGCTATTGTAACAGCGTTTTGCAGGGAGATTCTGGTTGTTTAAGTGGTGAGGGACATTCTGGGGATGAATGTGGTGGTGATTGCGTGTCTTGTGAGGTGGCAGTTTGGTCGAGTTCTGGGGCTTCTGGTGGAAGGTCTGGTGGTGCAGTCGTTGGTGGGGGCGTAGGTGGTGCAGCCGTGGCACTTTATTTTTGTGTTCCATTTCGTGAGCAGTTGCTAGAATATTATTCCAGCAACAAAAGTGCTGGGGATGCAGAAGAAAATCTGTTGACATGCTTGGCGGATTTGTTTACACAGATAAGTTCACAAAAGAAGAAAACGGGTGTCATTGCTCCAAAGCGTTTCGTACAAAGATTGAAGAAACAAAATGAGCTTTTCCGTAGCTATATGCACCAGGATGCTCATGAATTCTTAAACTTTTTGTTAAATGAACTTGTGGACATACTGGAGAAAGAAGCCCAAGCTGCAAAAAATGATCAAGAAACTTCTTCACCTCCTGAAAAAATGGGAAATGGTCCAAAGAATGTTCAGGCCAATGGTACTCATAAAGATCCCTTAGTTACCTGGGTGCACAAAAATTTTCAGAACAGTTCAATAACGAGCTGTTTGAAAAACTTCAGTTCCACAGAGACGTTAAATGCCGAGGACAAATTTTTTTGCGACAAGTGCTGCAGCTTGCAAGAAGCGCAGAAGAGGATGAAGATAAAAAAGCCACCTCACATCCTTGTCATCCATCTTAAACGGTTTAAGTACATCGAGCAGCTAGGCCGTTACAAGAAGCTATCTTACCGGGTTGTATTCCCGCTAGAGCTGAAGCTGAGTAACACAGTTGAGGATGTAGAATCTGAGTACTCTCTATTTGCGGTGGTTGTCCATGTTGGTAGTGGGCCAAACCATGGACACTATGTTAGCCTTGTGAAAAGCCATAACCACTGGCTATTTTTTGATGACGAAAATGTGGAGATGATTGATGAGTCTGCTGTGCAAACTTTCTTTGGGTCGGCACAGGAGTATTCGAGTAATACAGATCATGGATACATCTTGTTCTATGAGAGCCTCGGCACCAGTAACAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

391

Amino Acids

43.08

Weight (kDa)

5.84

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22310 AT2G22310 AT2G22310 AT4G39910
fragaria_vesca FvH4_1g20720
malus_domestica MD01G1031200.v1.1 MD15G1318500.v1.1
prunus_persica Prupe.6G187800_v2.0.a1
pyrus_communis pycom01g05860 pycom15g28490
rosa_chinensis RchiOBHm_Chr2g0113231
rosa_laevigata RLG00000018049
rosa_multiflora Rmu_sc0006838.1_g000020 Rmu_sc0008490.1_g000004
rosa_roxburghii Rroxscaffold_2G00129520 Rroxscaffold_2G00129770
rosa_rugosa Rorug02G0186000
rosa_samantha Rh2CG244600 Rh2DG248500
rosa_wichuraiana Rw2G018810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1154
AccB7I CCANNNNNTGG 1 cut(s) 989
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 4 cut(s) 11, 374, 896, 956
AclWI GGATC 1 cut(s) 638
AcsI RAATTY 4 cut(s) 79, 500, 670, 743
AcuI CTGAAG 2 cut(s) 694, 926
AfaI GTAC 4 cut(s) 441, 634, 845, 944
AfiI CCNNNNNNNGG 2 cut(s) 49, 989
AgsI TTSAA 3 cut(s) 451, 687, 703
AjnI CCWGG 2 cut(s) 486, 656
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 1 cut(s) 716
Alw44I GTGCAC 1 cut(s) 662
AlwI GGATC 1 cut(s) 638
Ama87I CYCGRG 2 cut(s) 23, 74
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 3 cut(s) 624, 859, 980
ApaLI GTGCAC 1 cut(s) 662
ApeKI GCWGC 6 cut(s) 8, 266, 557, 762, 765, 853
ApoI RAATTY 4 cut(s) 79, 500, 670, 743
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 1 cut(s) 781
AspS9I GGNCC 2 cut(s) 608, 980
AsuC2I CCSGG 1 cut(s) 884
AsuHPI GGTGA 3 cut(s) 152, 182, 576
AvaI CYCGRG 2 cut(s) 23, 74
AvaII GGWCC 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 666
BanI GGYRCC 1 cut(s) 1154
BanII GRGCYC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 863, 895
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 5 cut(s) 278, 544, 749, 777, 865
BccI CCATC 1 cut(s) 834
BceAI ACGGC 2 cut(s) 254, 846
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 2 cut(s) 488, 658
BciVI GTATCC 1 cut(s) 1121
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 884
BcoDI GTCTC 1 cut(s) 716
BfaI CTAG 3 cut(s) 311, 857, 899
BfmI CTRYAG 1 cut(s) 763
BfuI GTATCC 1 cut(s) 1121
BisI GCNGC 6 cut(s) 9, 267, 558, 763, 766, 854
BlsI GCNGC 6 cut(s) 10, 268, 559, 764, 767, 855
BmcAI AGTACT 1 cut(s) 944
Bme1390I CCNGG 3 cut(s) 488, 658, 884
Bme18I GGWCC 1 cut(s) 608
BmeT110I CYCGRG 2 cut(s) 23, 74
BmgT120I GGNCC 2 cut(s) 608, 980
BmiI GGNNCC 2 cut(s) 16, 1156
BmrFI CCNGG 3 cut(s) 488, 658, 884
BmsI GCATC 2 cut(s) 334, 481
BpmI CTGGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 884
BsaJI CCNNGG 5 cut(s) 270, 657, 735, 988, 1150
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 989
Bse1I ACTGG 4 cut(s) 43, 543, 1031, 1158
Bse3DI GCAATG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 2 cut(s) 488, 658
BseDI CCNNGG 5 cut(s) 270, 657, 735, 988, 1150
BseGI GGATG 7 cut(s) 163, 349, 496, 795, 813, 822, 934
BseLI CCNNNNNNNGG 2 cut(s) 49, 989
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 902, 930
BseNI ACTGG 4 cut(s) 43, 543, 1031, 1158
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 5 cut(s) 278, 544, 749, 777, 865
BseYI CCCAGC 1 cut(s) 338
BsgI GTGCAG 2 cut(s) 258, 285
BshFI GGCC 3 cut(s) 626, 861, 982
BshNI GGYRCC 1 cut(s) 1154
BsiHKAI GWGCWC 1 cut(s) 666
BsiHKCI CYCGRG 2 cut(s) 23, 74
BsiSI CCGG 2 cut(s) 50, 883
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 49, 989
BsmAI GTCTC 1 cut(s) 716
BsmBI CGTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 3 cut(s) 626, 861, 982
BsoBI CYCGRG 2 cut(s) 23, 74
Bsp1286I GDGCHC 2 cut(s) 17, 666
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 3 cut(s) 568, 643, 1120
Bsp19I CCATGG 1 cut(s) 988
BspACI CCGC 4 cut(s) 11, 374, 896, 956
BspANI GGCC 3 cut(s) 626, 861, 982
BspCNI CTCAG 2 cut(s) 903, 931
BspEI TCCGGA 1 cut(s) 49
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 16, 1156
BspMAI CTGCAG 1 cut(s) 767
BspPI GGATC 1 cut(s) 638
BspT107I GGYRCC 1 cut(s) 1154
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 4 cut(s) 43, 543, 1031, 1158
BssECI CCNNGG 5 cut(s) 270, 657, 735, 988, 1150
BssMI GATC 3 cut(s) 568, 643, 1120
BssT1I CCWWGG 1 cut(s) 988
Bst2UI CCWGG 2 cut(s) 488, 658
Bst4CI ACNGT 3 cut(s) 683, 837, 922
Bst6I CTCTTC 1 cut(s) 779
BstAPI GCANNNNNTGC 1 cut(s) 93
BstC8I GCNNGC 3 cut(s) 13, 59, 770
BstDEI CTNAG 3 cut(s) 649, 911, 939
BstDSI CCRYGG 2 cut(s) 270, 988
BstF5I GGATG 7 cut(s) 163, 349, 496, 795, 813, 822, 934
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 3 cut(s) 571, 646, 1123
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 3 cut(s) 568, 643, 1120
BstMWI GCNNNNNNNGC 6 cut(s) 93, 272, 344, 557, 759, 778
BstNI CCWGG 2 cut(s) 488, 658
BstNSI RCATGY 1 cut(s) 369
BstSCI CCNGG 3 cut(s) 486, 656, 882
BstSFI CTRYAG 1 cut(s) 763
BstSLI GKGCMC 1 cut(s) 666
BstV1I GCAGC 5 cut(s) 278, 544, 749, 777, 865
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuI GTATCC 1 cut(s) 1121
BsuRI GGCC 3 cut(s) 626, 861, 982
BtgI CCRYGG 2 cut(s) 270, 988
BtsCI GGATG 7 cut(s) 163, 349, 496, 795, 813, 822, 934
BtsIMutI CAGTG 1 cut(s) 1024
Cac8I GCNNGC 3 cut(s) 13, 59, 770
CciI TCATGA 1 cut(s) 496
CfoI GCGC 1 cut(s) 781
Cfr13I GGNCC 2 cut(s) 608, 980
Csp6I GTAC 4 cut(s) 440, 633, 844, 943
CviAII CATG 5 cut(s) 366, 497, 968, 989, 1124
CviQI GTAC 4 cut(s) 440, 633, 844, 943
DdeI CTNAG 3 cut(s) 649, 911, 939
DpnI GATC 3 cut(s) 570, 645, 1122
DpnII GATC 3 cut(s) 568, 643, 1120
Eam1104I CTCTTC 1 cut(s) 779
EarI CTCTTC 1 cut(s) 779
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 988
Eco24I GRGCYC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 608
Eco57I CTGAAG 2 cut(s) 694, 926
Eco88I CYCGRG 2 cut(s) 23, 74
EcoRI GAATTC 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 486, 656
EcoT14I CCWWGG 1 cut(s) 988
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 988
Esp3I CGTCTC 1 cut(s) 716
FaeI CATG 5 cut(s) 369, 500, 971, 992, 1127
FaqI GGGAC 1 cut(s) 159
FatI CATG 5 cut(s) 365, 496, 967, 988, 1123
FauI CCCGC 2 cut(s) 4, 903
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 6 cut(s) 9, 267, 558, 763, 766, 854
FokI GGATG 7 cut(s) 170, 356, 503, 800, 802, 809, 941
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 6 cut(s) 9, 267, 558, 763, 766, 854
FspBI CTAG 3 cut(s) 311, 857, 899
GlaI GCGC 1 cut(s) 780
GluI GCNGC 6 cut(s) 9, 267, 558, 763, 766, 854
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 3 cut(s) 626, 861, 982
HapII CCGG 2 cut(s) 50, 883
HhaI GCGC 1 cut(s) 781
Hin1II CATG 5 cut(s) 369, 500, 971, 992, 1127
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 4 cut(s) 72, 122, 935, 1067
HpaII CCGG 2 cut(s) 50, 883
HphI GGTGA 3 cut(s) 152, 182, 576
Hpy166II GTNNAC 5 cut(s) 363, 384, 398, 532, 664
Hpy188I TCNGA 3 cut(s) 71, 678, 940
Hpy188III TCNNGA 7 cut(s) 25, 50, 76, 299, 497, 572, 590
Hpy8I GTNNAC 5 cut(s) 363, 384, 398, 532, 664
HpyAV CCTTC 2 cut(s) 47, 219
HpyCH4III ACNGT 3 cut(s) 683, 837, 922
HpyCH4IV ACGT 1 cut(s) 725
HpyF10VI GCNNNNNNNGC 6 cut(s) 93, 272, 344, 557, 759, 778
HpyF3I CTNAG 3 cut(s) 649, 911, 939
HpySE526I ACGT 1 cut(s) 725
Hsp92II CATG 5 cut(s) 369, 500, 971, 992, 1127
HspAI GCGC 1 cut(s) 779
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 568, 643, 1120
LmnI GCTCC 2 cut(s) 20, 430
Lsp1109I GCAGC 5 cut(s) 278, 544, 749, 777, 865
LweI GCATC 2 cut(s) 334, 481
MaeI CTAG 3 cut(s) 311, 857, 899
MaeII ACGT 1 cut(s) 725
MaeIII GTNAC 5 cut(s) 101, 652, 863, 914, 1160
MalI GATC 3 cut(s) 570, 645, 1122
MboI GATC 3 cut(s) 568, 643, 1120
MboII GAAGA 6 cut(s) 362, 418, 463, 573, 796, 805
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 2 cut(s) 17, 666
MluCI AATT 4 cut(s) 79, 500, 670, 743
MlyI GAGTC 2 cut(s) 66, 1076
MnlI CCTC 8 cut(s) 136, 181, 597, 730, 780, 819, 919, 1160
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 7 cut(s) 134, 506, 518, 728, 831, 840, 1171
MslI CAYNNNNRTG 1 cut(s) 489
MspI CCGG 2 cut(s) 50, 883
MspR9I CCNGG 3 cut(s) 488, 658, 884
MvaI CCWGG 2 cut(s) 488, 658
MwoI GCNNNNNNNGC 6 cut(s) 93, 272, 344, 557, 759, 778
NciI CCSGG 1 cut(s) 884
NcoI CCATGG 1 cut(s) 988
NdeII GATC 3 cut(s) 568, 643, 1120
NlaIII CATG 5 cut(s) 369, 500, 971, 992, 1127
NlaIV GGNNCC 2 cut(s) 16, 1156
NmeAIII GCCGAG 3 cut(s) 15, 760, 1131
NspI RCATGY 1 cut(s) 369
PaeR7I CTCGAG 2 cut(s) 23, 74
PagI TCATGA 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 2 cut(s) 122, 935
PflMI CCANNNNNTGG 1 cut(s) 989
PkrI GCNGC 6 cut(s) 10, 268, 559, 764, 767, 855
PleI GAGTC 2 cut(s) 66, 1075
PpsI GAGTC 2 cut(s) 66, 1075
Psp6I CCWGG 2 cut(s) 486, 656
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 2 cut(s) 486, 656
PspN4I GGNNCC 2 cut(s) 16, 1156
PspPI GGNCC 2 cut(s) 608, 980
PstI CTGCAG 1 cut(s) 767
PsuI RGATCY 1 cut(s) 643
RsaI GTAC 4 cut(s) 441, 634, 845, 944
RsaNI GTAC 4 cut(s) 440, 633, 844, 943
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 7 cut(s) 134, 506, 518, 728, 831, 840, 1171
SatI GCNGC 6 cut(s) 9, 267, 558, 763, 766, 854
Sau3AI GATC 3 cut(s) 568, 643, 1120
Sau96I GGNCC 2 cut(s) 608, 980
ScaI AGTACT 1 cut(s) 944
SchI GAGTC 2 cut(s) 66, 1076
ScrFI CCNGG 3 cut(s) 488, 658, 884
SduI GDGCHC 2 cut(s) 17, 666
SfaNI GCATC 2 cut(s) 334, 481
SfcI CTRYAG 1 cut(s) 763
Sfr274I CTCGAG 2 cut(s) 23, 74
SinI GGWCC 1 cut(s) 608
SlaI CTCGAG 2 cut(s) 23, 74
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 2 cut(s) 23, 74
SmoI CTYRAG 2 cut(s) 23, 74
Sse9I AATT 4 cut(s) 79, 500, 670, 743
SsiI CCGC 4 cut(s) 11, 374, 896, 956
SspI AATATT 1 cut(s) 317
SspMI CTAG 3 cut(s) 311, 857, 899
StyD4I CCNGG 3 cut(s) 486, 656, 882
StyI CCWWGG 1 cut(s) 988
TaaI ACNGT 3 cut(s) 683, 837, 922
TaiI ACGT 1 cut(s) 728
TaqI TCGA 5 cut(s) 24, 75, 203, 849, 1109
TasI AATT 4 cut(s) 79, 500, 670, 743
TatI WGTACW 2 cut(s) 843, 942
TfiI GAWTC 2 cut(s) 122, 935
Tru1I TTAA 7 cut(s) 134, 506, 518, 728, 831, 840, 1171
Tru9I TTAA 7 cut(s) 134, 506, 518, 728, 831, 840, 1171
TscAI CASTG 1 cut(s) 1031
TseI GCWGC 6 cut(s) 8, 266, 557, 762, 765, 853
TspDTI ATGAA 4 cut(s) 174, 513, 537, 806
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 1031
Van91I CCANNNNNTGG 1 cut(s) 989
VneI GTGCAC 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 608
XapI RAATTY 4 cut(s) 79, 500, 670, 743
XceI RCATGY 1 cut(s) 369
XcmI CCANNNNNNNNNTGG 1 cut(s) 974
XhoI CTCGAG 2 cut(s) 23, 74
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 3 cut(s) 311, 857, 899
ZrmI AGTACT 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.