Prupe.6G187800_v2.0.a1

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010882
Physical Location & Seq
Reverse (-)
19627887 .. 19632844
4958 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G187800.1

Sequence Viewer

Length: 1110 bp
ATGGGTGCTGCGGGCTCCAAACTCGAGAAGGCTCTCGGCGACCAGTTCCCCGAAGGCGAGCGATATTTCGGCCTCGAGAATTTCGGGAACACTTGCTATTGTAACAGCGTTTTGCAGGCACTTTATTTTTGTGTTCCATTTCGTGAACAATTGCTCGAATATTATTCCAGCAACAAAAGTACTGGGGATGCAGAAGAAAATCTCTTGACATGCTTAGCGGACTTGTTTACACAGATAAGTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCAAAGCGTTTTGTTCAGAGATTGAAGAAACAAAATGAGCTTTTCCGTAGCTATATGCACCAGGATGCTCATGAGTTCTTAAATTTTTTGCTTAATGAACTTGTTGACATACTGGAGAAAGAAGCCCAAGCAGCAAAAAGTGATCAAGAAACTTCTTCACCTCCTGAAAAGATGGTAAATGGTCCAAAGAATGCTCAGGCCAATGGTTCTCATAAAGATCCCTTAGTTACCTGGGTACACAAGAATTTTCAGGGAATACTCACCAATGAAACGAGGTGCTTACGGTGTGAGACAGTGACTGCAAGAGATGAAACATTTTTTGACTTAAGCCTGGATATTGAACAGAACAGTTCAATTACAAGCTGTTTGAAAAACTTCAGTTCGACAGAGACATTGAATGCTGAGGACAAATTCTTTTGCGACAAGTGCTGCAGCTTGCAAGAAGCGCAGAAGAGAATGAAGATAAAAAAGCCACCTCACATCCTGGTCATCCATTTGAAGCGATTTAAGTACATTGAGCAGCTTGGCCGTTACAAGAAGCTATCTTATCGGGTTGTATTCCCGCTTGAGCTGAAACTGAGTAACACGGTTGAAGATGCAGAATCCGAGTATTCTCTGTTTGCCGTTGTTGTCCATGTTGGAAGTGGGCCAAACCACGGACACTATGTTAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGATGAAAACGTGGAGATGATTGATGAGTCTGCTGTGCAAACTTTCTTTGGATCAGCGCAGGAGTATTCAAGTAATACAGATCATGGATACATCTTGTTCTACGAGAGCCTAGGCACCAGTAACAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

370

Amino Acids

42.09

Weight (kDa)

5.88

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22310 AT2G22310 AT2G22310 AT4G39910
fragaria_vesca FvH4_1g20720
malus_domestica MD01G1031200.v1.1 MD15G1318500.v1.1
prunus_persica Prupe.6G187800_v2.0.a1
pyrus_communis pycom01g05860 pycom15g28490
rosa_chinensis RchiOBHm_Chr2g0113231
rosa_laevigata RLG00000018049
rosa_multiflora Rmu_sc0006838.1_g000020 Rmu_sc0008490.1_g000004
rosa_roxburghii Rroxscaffold_2G00129520 Rroxscaffold_2G00129770
rosa_rugosa Rorug02G0186000
rosa_samantha Rh2CG244600 Rh2DG248500
rosa_wichuraiana Rw2G018810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1091
AciI CCGC 3 cut(s) 11, 218, 833
AclWI GGATC 2 cut(s) 482, 1036
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 4 cut(s) 79, 352, 514, 680
AcuI CTGAAG 1 cut(s) 631
AfaI GTAC 3 cut(s) 181, 507, 782
AfiI CCNNNNNNNGG 1 cut(s) 926
AflII CTTAAG 1 cut(s) 595
AgsI TTSAA 8 cut(s) 295, 611, 624, 640, 667, 769, 863, 1047
AjnI CCWGG 4 cut(s) 330, 500, 600, 753
AluBI AGCT 7 cut(s) 310, 321, 633, 705, 793, 811, 841
AluI AGCT 7 cut(s) 310, 321, 633, 705, 793, 811, 841
Alw26I GTCTC 2 cut(s) 554, 653
AlwI GGATC 2 cut(s) 482, 1036
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 2 cut(s) 23, 74
AoxI GGCC 4 cut(s) 70, 468, 796, 917
ApeKI GCWGC 5 cut(s) 8, 401, 699, 702, 790
ApoI RAATTY 4 cut(s) 79, 352, 514, 680
Asp700I GAANNNNTTC 1 cut(s) 644
AspA2I CCTAGG 1 cut(s) 1087
AspLEI GCGC 2 cut(s) 718, 1036
AspS9I GGNCC 2 cut(s) 452, 917
AsuHPI GGTGA 2 cut(s) 420, 523
AvaI CYCGRG 2 cut(s) 23, 74
AvaII GGWCC 1 cut(s) 452
AvrII CCTAGG 1 cut(s) 1087
BanI GGYRCC 1 cut(s) 1091
BanII GRGCYC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 4 cut(s) 413, 686, 714, 802
BccI CCATC 1 cut(s) 436
BceAI ACGGC 2 cut(s) 783, 878
BciT130I CCWGG 4 cut(s) 332, 502, 602, 755
BciVI GTATCC 1 cut(s) 1058
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 554, 653
BfaI CTAG 1 cut(s) 1088
BfmI CTRYAG 1 cut(s) 700
BfrI CTTAAG 1 cut(s) 595
BfuI GTATCC 1 cut(s) 1058
BisI GCNGC 5 cut(s) 9, 402, 700, 703, 791
BlnI CCTAGG 1 cut(s) 1087
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 5 cut(s) 10, 403, 701, 704, 792
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 4 cut(s) 332, 502, 602, 755
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 2 cut(s) 23, 74
BmgT120I GGNCC 2 cut(s) 452, 917
BmiI GGNNCC 2 cut(s) 16, 1093
BmrFI CCNGG 4 cut(s) 332, 502, 602, 755
BmrI ACTGGG 1 cut(s) 192
BmsI GCATC 3 cut(s) 178, 325, 856
BmuI ACTGGG 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 2 cut(s) 465, 672
Bpu1102I GCTNAGC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 857
BsaJI CCNNGG 3 cut(s) 501, 925, 1087
Bsc4I CCNNNNNNNGG 1 cut(s) 926
Bse1I ACTGG 5 cut(s) 43, 187, 387, 968, 1095
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 4 cut(s) 332, 502, 602, 755
BseDI CCNNGG 3 cut(s) 501, 925, 1087
BseGI GGATG 4 cut(s) 193, 340, 750, 759
BseLI CCNNNNNNNGG 1 cut(s) 926
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 3 cut(s) 479, 663, 839
BseNI ACTGG 5 cut(s) 43, 187, 387, 968, 1095
BseXI GCAGC 4 cut(s) 413, 686, 714, 802
BshFI GGCC 4 cut(s) 72, 470, 798, 919
BshNI GGYRCC 1 cut(s) 1091
BsiHKCI CYCGRG 2 cut(s) 23, 74
BslI CCNNNNNNNGG 1 cut(s) 926
BsmAI GTCTC 2 cut(s) 554, 653
BsmI GAATGC 2 cut(s) 466, 673
BsnI GGCC 4 cut(s) 72, 470, 798, 919
BsoBI CYCGRG 2 cut(s) 23, 74
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 412, 487, 1028, 1057
Bsp1720I GCTNAGC 1 cut(s) 214
BspACI CCGC 3 cut(s) 11, 218, 833
BspANI GGCC 4 cut(s) 72, 470, 798, 919
BspCNI CTCAG 3 cut(s) 478, 664, 840
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 16, 1093
BspMAI CTGCAG 1 cut(s) 704
BspPI GGATC 2 cut(s) 482, 1036
BspT107I GGYRCC 1 cut(s) 1091
BspTI CTTAAG 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 5 cut(s) 43, 187, 387, 968, 1095
BssECI CCNNGG 3 cut(s) 501, 925, 1087
BssMI GATC 4 cut(s) 412, 487, 1028, 1057
BssT1I CCWWGG 1 cut(s) 1087
Bst2UI CCWGG 4 cut(s) 332, 502, 602, 755
Bst4CI ACNGT 4 cut(s) 555, 565, 620, 859
Bst6I CTCTTC 1 cut(s) 716
BstAFI CTTAAG 1 cut(s) 595
BstC8I GCNNGC 4 cut(s) 13, 59, 117, 707
BstDEI CTNAG 5 cut(s) 214, 465, 493, 672, 848
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 4 cut(s) 193, 340, 750, 759
BstHHI GCGC 2 cut(s) 718, 1036
BstKTI GATC 4 cut(s) 415, 490, 1031, 1060
BstMAI GTCTC 2 cut(s) 554, 653
BstMBI GATC 4 cut(s) 412, 487, 1028, 1057
BstMWI GCNNNNNNNGC 3 cut(s) 401, 696, 715
BstNI CCWGG 4 cut(s) 332, 502, 602, 755
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 4 cut(s) 330, 500, 600, 753
BstSFI CTRYAG 1 cut(s) 700
BstV1I GCAGC 4 cut(s) 413, 686, 714, 802
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuI GTATCC 1 cut(s) 1058
BsuRI GGCC 4 cut(s) 72, 470, 798, 919
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 4 cut(s) 193, 340, 750, 759
BtsIMutI CAGTG 2 cut(s) 570, 961
Cac8I GCNNGC 4 cut(s) 13, 59, 117, 707
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 340
CfoI GCGC 2 cut(s) 718, 1036
Cfr13I GGNCC 2 cut(s) 452, 917
Csp6I GTAC 3 cut(s) 180, 506, 781
CviAII CATG 4 cut(s) 210, 341, 905, 1061
CviQI GTAC 3 cut(s) 180, 506, 781
DdeI CTNAG 5 cut(s) 214, 465, 493, 672, 848
DpnI GATC 4 cut(s) 414, 489, 1030, 1059
DpnII GATC 4 cut(s) 412, 487, 1028, 1057
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 1087
Eco24I GRGCYC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 631
Eco88I CYCGRG 2 cut(s) 23, 74
EcoRII CCWGG 4 cut(s) 330, 500, 600, 753
EcoT14I CCWWGG 1 cut(s) 1087
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 1087
FaeI CATG 4 cut(s) 213, 344, 908, 1064
FatI CATG 4 cut(s) 209, 340, 904, 1060
FauI CCCGC 2 cut(s) 4, 840
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 5 cut(s) 9, 402, 700, 703, 791
FokI GGATG 4 cut(s) 200, 347, 737, 746
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 5 cut(s) 9, 402, 700, 703, 791
FspBI CTAG 1 cut(s) 1088
GlaI GCGC 2 cut(s) 717, 1035
GluI GCNGC 5 cut(s) 9, 402, 700, 703, 791
GsuI CTGGAG 1 cut(s) 404
HaeIII GGCC 4 cut(s) 72, 470, 798, 919
HhaI GCGC 2 cut(s) 718, 1036
Hin1II CATG 4 cut(s) 213, 344, 908, 1064
Hin6I GCGC 2 cut(s) 716, 1034
HinP1I GCGC 2 cut(s) 716, 1034
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 2 cut(s) 872, 1004
HphI GGTGA 2 cut(s) 420, 523
Hpy166II GTNNAC 4 cut(s) 146, 228, 376, 508
Hpy188I TCNGA 2 cut(s) 288, 877
Hpy188III TCNNGA 8 cut(s) 25, 76, 85, 143, 205, 341, 416, 434
Hpy8I GTNNAC 4 cut(s) 146, 228, 376, 508
HpyAV CCTTC 2 cut(s) 22, 47
HpyCH4III ACNGT 4 cut(s) 555, 565, 620, 859
HpyCH4IV ACGT 1 cut(s) 987
HpyCH4V TGCA 8 cut(s) 115, 191, 328, 572, 702, 709, 869, 1015
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 696, 715
HpyF3I CTNAG 5 cut(s) 214, 465, 493, 672, 848
HpySE526I ACGT 1 cut(s) 987
Hsp92II CATG 4 cut(s) 213, 344, 908, 1064
HspAI GCGC 2 cut(s) 716, 1034
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 412, 487, 1028, 1057
LmnI GCTCC 2 cut(s) 20, 274
Lsp1109I GCAGC 4 cut(s) 413, 686, 714, 802
LweI GCATC 3 cut(s) 178, 325, 856
MaeI CTAG 1 cut(s) 1088
MaeII ACGT 1 cut(s) 987
MaeIII GTNAC 6 cut(s) 101, 496, 565, 800, 851, 1097
MalI GATC 4 cut(s) 414, 489, 1030, 1059
MboI GATC 4 cut(s) 412, 487, 1028, 1057
MboII GAAGA 8 cut(s) 206, 259, 262, 307, 417, 733, 742, 875
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 6 cut(s) 79, 149, 352, 514, 624, 680
MlyI GAGTC 1 cut(s) 1013
MmeI TCCRAC 1 cut(s) 889
MnlI CCTC 5 cut(s) 83, 441, 537, 667, 756
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 5 cut(s) 350, 363, 596, 777, 1108
MslI CAYNNNNRTG 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 595
MspR9I CCNGG 4 cut(s) 332, 502, 602, 755
MunI CAATTG 1 cut(s) 149
Mva1269I GAATGC 2 cut(s) 466, 673
MvaI CCWGG 4 cut(s) 332, 502, 602, 755
MwoI GCNNNNNNNGC 3 cut(s) 401, 696, 715
NdeII GATC 4 cut(s) 412, 487, 1028, 1057
NlaIII CATG 4 cut(s) 213, 344, 908, 1064
NlaIV GGNNCC 2 cut(s) 16, 1093
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 1 cut(s) 213
PaeR7I CTCGAG 2 cut(s) 23, 74
PagI TCATGA 1 cut(s) 340
PctI GAATGC 2 cut(s) 466, 673
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 872
PkrI GCNGC 5 cut(s) 10, 403, 701, 704, 792
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
Psp6I CCWGG 4 cut(s) 330, 500, 600, 753
PspGI CCWGG 4 cut(s) 330, 500, 600, 753
PspN4I GGNNCC 2 cut(s) 16, 1093
PspPI GGNCC 2 cut(s) 452, 917
PstI CTGCAG 1 cut(s) 704
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 3 cut(s) 181, 507, 782
RsaNI GTAC 3 cut(s) 180, 506, 781
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 5 cut(s) 350, 363, 596, 777, 1108
SatI GCNGC 5 cut(s) 9, 402, 700, 703, 791
Sau3AI GATC 4 cut(s) 412, 487, 1028, 1057
Sau96I GGNCC 2 cut(s) 452, 917
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 1 cut(s) 1013
ScrFI CCNGG 4 cut(s) 332, 502, 602, 755
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 3 cut(s) 178, 325, 856
SfcI CTRYAG 1 cut(s) 700
Sfr274I CTCGAG 2 cut(s) 23, 74
SinI GGWCC 1 cut(s) 452
SlaI CTCGAG 2 cut(s) 23, 74
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 4 cut(s) 23, 74, 595, 836
SmoI CTYRAG 4 cut(s) 23, 74, 595, 836
Sse9I AATT 6 cut(s) 79, 149, 352, 514, 624, 680
SsiI CCGC 3 cut(s) 11, 218, 833
SspI AATATT 1 cut(s) 161
SspMI CTAG 1 cut(s) 1088
StyD4I CCNGG 4 cut(s) 330, 500, 600, 753
StyI CCWWGG 1 cut(s) 1087
TaaI ACNGT 4 cut(s) 555, 565, 620, 859
TaiI ACGT 1 cut(s) 990
TaqI TCGA 4 cut(s) 24, 75, 156, 653
TasI AATT 6 cut(s) 79, 149, 352, 514, 624, 680
TatI WGTACW 2 cut(s) 179, 780
TfiI GAWTC 1 cut(s) 872
Tru1I TTAA 5 cut(s) 350, 363, 596, 777, 1108
Tru9I TTAA 5 cut(s) 350, 363, 596, 777, 1108
TscAI CASTG 2 cut(s) 570, 968
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 5 cut(s) 8, 401, 699, 702, 790
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 5 cut(s) 381, 552, 594, 743, 996
TspGWI ACGGA 2 cut(s) 305, 942
TspRI CASTG 2 cut(s) 570, 968
Vha464I CTTAAG 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 4 cut(s) 79, 352, 514, 680
XceI RCATGY 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XhoI CTCGAG 2 cut(s) 23, 74
XmaJI CCTAGG 1 cut(s) 1087
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 1 cut(s) 1088
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.