AT4G39910

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010882
Physical Location & Seq
Reverse (-)
18511521 .. 18514382
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39910.1

Sequence Viewer

Length: 1116 bp
ATGGGCGCCGCGGGCTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCCGAAGGTGAACGCTACTTTGGATTCGAGAATTTCGGCAACACTTGCTACTGTAACAGCGTTTTGCAGGCTCTTTATTTCTGTGTTCCTTTCCGTGAACAACTGCTCGAATACTATACCAGTAATAAAAGCGTGGCCGATGCTGAAGAGAATCTTATGACCTGCCTGGCAGACTTGTTTTCGCAGATAAGTTCCCAGAAGAAGAAAACAGGTGTTATTGCGCCTAAGCGATTTGTACAGAGGTTGAAGAAACAAAATGAGCTGTTTCGGAGTTATATGCACCAGGATGCACATGAATTCCTGAATTATTTGCTGAATGAAGTTGTTGACATACTGGAGAAAGAGGCAAAAGCTACAAAAACTGAACATGAAACCTCGTCATCATCATCTCCCGAGAAGATAGCAAATGGACTGAAAGTTCCTCAGGCAAATGGTGTTGTGCACAAGGAGCCTATTGTTACATGGGTGCACAATATTTTTCAGGGCATACTTACCAACGAGACAAGGTGTCTGCGATGTGAAACAGTGACAGCAAGAGACGAAACATTCCTAGACCTAAGCCTTGATATCGAACAGAACAGTTCGATAACTAGCTGTTTGAAAAACTTCAGCTCCACAGAGACGCTTCACGCTGAAGACAAATTCTTTTGTGACAAATGCTGCAGCTTACAAGAAGCACAAAAGCGGATGAAGATCAAGAAGCCACCACACATCCTAGTGATTCATCTAAAACGATTCAAATACATCGAACAGCTAGGCCGCTACAAGAAGCTCTCCTATAGAGTTGTCTTCCCTTTGGAGCTAAAACTGAGCAACACAGTGGAACCATACGCAGACGTGGAGTACTCTCTGTTTGCAGTGGTGGTTCATGTGGGAAGTGGACCCAACCATGGTCATTACGTAAGCCTTGTGAAAAGCCATAACCATTGGCTCTTCTTTGATGATGAGAATGTTGAGATGATTGAAGAATCAGCTGTTCAAACATTCTTTGGATCGTCTCAGGAGTATTCGAGCAATACTGACCATGGTTACATCCTGTTCTATGAGAGCCTTGGACCGACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

371

Amino Acids

42.45

Weight (kDa)

6.08

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 24 - 364 1.9e-65 Ubiquitin carboxyl-terminal hydrolase
UCH_1 PF13423 24 - 333 3.5e-25 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22310 AT2G22310 AT2G22310 AT4G39910
fragaria_vesca FvH4_1g20720
malus_domestica MD01G1031200.v1.1 MD15G1318500.v1.1
prunus_persica Prupe.6G187800_v2.0.a1
pyrus_communis pycom01g05860 pycom15g28490
rosa_chinensis RchiOBHm_Chr2g0113231
rosa_laevigata RLG00000018049
rosa_multiflora Rmu_sc0006838.1_g000020 Rmu_sc0008490.1_g000004
rosa_roxburghii Rroxscaffold_2G00129520 Rroxscaffold_2G00129770
rosa_rugosa Rorug02G0186000
rosa_samantha Rh2CG244600 Rh2DG248500
rosa_wichuraiana Rw2G018810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 9, 11, 733, 808
AclWI GGATC 1 cut(s) 1048
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 3 cut(s) 79, 344, 689
AcuI CTGAAG 3 cut(s) 213, 640, 702
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 2 cut(s) 285, 893
AfiI CCNNNNNNNGG 1 cut(s) 938
AgsI TTSAA 5 cut(s) 295, 649, 787, 1013, 1028
AhdI GACNNNNNGTC 1 cut(s) 555
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 2 cut(s) 213, 330
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
Alw21I GWGCWC 2 cut(s) 492, 519
Alw26I GTCTC 4 cut(s) 542, 579, 662, 1050
Alw44I GTGCAC 2 cut(s) 488, 515
AlwI GGATC 1 cut(s) 1048
Ama87I CYCGRG 2 cut(s) 23, 440
AoxI GGCC 2 cut(s) 183, 805
ApaLI GTGCAC 2 cut(s) 488, 515
ApeKI GCWGC 2 cut(s) 708, 711
ApoI RAATTY 3 cut(s) 79, 344, 689
Asp700I GAANNNNTTC 1 cut(s) 653
AspLEI GCGC 2 cut(s) 8, 271
AspS9I GGNCC 2 cut(s) 929, 1103
AsuHPI GGTGA 1 cut(s) 68
AvaI CYCGRG 2 cut(s) 23, 440
AvaII GGWCC 2 cut(s) 929, 1103
AxyI CCTNAGG 1 cut(s) 471
BaeGI GKGCMC 2 cut(s) 492, 519
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 690, 829
Bbv12I GWGCWC 2 cut(s) 492, 519
BbvI GCAGC 2 cut(s) 695, 723
BciT130I CCWGG 2 cut(s) 215, 332
BcoDI GTCTC 4 cut(s) 542, 579, 662, 1050
BfaI CTAG 4 cut(s) 599, 639, 764, 803
BfmI CTRYAG 2 cut(s) 709, 826
BfoI RGCGCY 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 4 cut(s) 9, 709, 712, 808
BlsI GCNGC 4 cut(s) 10, 710, 713, 809
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 2 cut(s) 215, 332
Bme18I GGWCC 2 cut(s) 929, 1103
BmeRI GACNNNNNGTC 1 cut(s) 555
BmeT110I CYCGRG 2 cut(s) 23, 440
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 2 cut(s) 929, 1103
BmiI GGNNCC 5 cut(s) 7, 16, 498, 873, 931
BmrFI CCNGG 2 cut(s) 215, 332
BmsI GCATC 2 cut(s) 178, 325
BpiI GAAGAC 2 cut(s) 690, 829
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 2 cut(s) 273, 605
BsaAI YACGTR 1 cut(s) 949
BsaBI GATNNNNATC 1 cut(s) 740
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 4 cut(s) 9, 937, 1072, 1099
BsaXI ACNNNNNCTCC 2 cut(s) 644, 674
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse1I ACTGG 3 cut(s) 43, 168, 387
Bse21I CCTNAGG 1 cut(s) 471
Bse8I GATNNNNATC 1 cut(s) 740
BseBI CCWGG 2 cut(s) 215, 332
BseDI CCNNGG 4 cut(s) 9, 937, 1072, 1099
BseGI GGATG 4 cut(s) 340, 741, 759, 1080
BseJI GATNNNNATC 1 cut(s) 740
BseLI CCNNNNNNNGG 1 cut(s) 938
BseMII CTCAG 3 cut(s) 485, 848, 1061
BseNI ACTGG 3 cut(s) 43, 168, 387
BseSI GKGCMC 2 cut(s) 492, 519
BseXI GCAGC 2 cut(s) 695, 723
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 185, 807
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 492, 519
BsiHKCI CYCGRG 2 cut(s) 23, 440
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 4 cut(s) 542, 579, 662, 1050
BsmBI CGTCTC 3 cut(s) 579, 662, 1050
BsnI GGCC 2 cut(s) 185, 807
BsoBI CYCGRG 2 cut(s) 23, 440
Bsp1286I GDGCHC 3 cut(s) 17, 492, 519
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 2 cut(s) 741, 1040
Bsp19I CCATGG 2 cut(s) 937, 1072
BspACI CCGC 4 cut(s) 9, 11, 733, 808
BspANI GGCC 2 cut(s) 185, 807
BspCNI CTCAG 3 cut(s) 484, 849, 1060
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 5 cut(s) 7, 16, 498, 873, 931
BspMAI CTGCAG 1 cut(s) 713
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 1048
BspQI GCTCTTC 1 cut(s) 986
BspT107I GGYRCC 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 3 cut(s) 43, 168, 387
BssECI CCNNGG 4 cut(s) 9, 937, 1072, 1099
BssMI GATC 2 cut(s) 741, 1040
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 3 cut(s) 937, 1072, 1099
Bst2UI CCWGG 2 cut(s) 215, 332
Bst4CI ACNGT 4 cut(s) 101, 574, 629, 868
Bst6I CTCTTC 2 cut(s) 189, 986
BstACI GRCGYC 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 93
BstAUI TGTACA 1 cut(s) 283
BstBAI YACGTR 1 cut(s) 949
BstC8I GCNNGC 2 cut(s) 13, 117
BstDEI CTNAG 5 cut(s) 273, 471, 605, 857, 1047
BstDSI CCRYGG 3 cut(s) 9, 937, 1072
BstF5I GGATG 4 cut(s) 340, 741, 759, 1080
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 2 cut(s) 8, 271
BstKTI GATC 2 cut(s) 744, 1043
BstMAI GTCTC 4 cut(s) 542, 579, 662, 1050
BstMBI GATC 2 cut(s) 741, 1040
BstMWI GCNNNNNNNGC 3 cut(s) 12, 93, 496
BstNI CCWGG 2 cut(s) 215, 332
BstSCI CCNGG 2 cut(s) 213, 330
BstSFI CTRYAG 2 cut(s) 709, 826
BstSLI GKGCMC 2 cut(s) 492, 519
BstSNI TACGTA 1 cut(s) 949
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 695, 723
BstV2I GAAGAC 2 cut(s) 690, 829
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 2 cut(s) 185, 807
BtgI CCRYGG 3 cut(s) 9, 937, 1072
BtgZI GCGATG 1 cut(s) 577
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 4 cut(s) 340, 741, 759, 1080
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 3 cut(s) 579, 873, 912
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 13, 117
CfoI GCGC 2 cut(s) 8, 271
Cfr13I GGNCC 2 cut(s) 929, 1103
Cfr42I CCGCGG 1 cut(s) 12
CseI GACGC 1 cut(s) 679
Csp6I GTAC 2 cut(s) 284, 892
CviAII CATG 6 cut(s) 341, 416, 510, 917, 938, 1073
CviQI GTAC 2 cut(s) 284, 892
DdeI CTNAG 5 cut(s) 273, 471, 605, 857, 1047
DinI GGCGCC 1 cut(s) 7
DpnI GATC 2 cut(s) 743, 1042
DpnII GATC 2 cut(s) 741, 1040
DriI GACNNNNNGTC 1 cut(s) 555
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 189, 986
Eam1105I GACNNNNNGTC 1 cut(s) 555
EarI CTCTTC 2 cut(s) 189, 986
Eco105I TACGTA 1 cut(s) 949
Eco130I CCWWGG 3 cut(s) 937, 1072, 1099
Eco24I GRGCYC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 2 cut(s) 929, 1103
Eco57I CTGAAG 3 cut(s) 213, 640, 702
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 2 cut(s) 23, 440
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 213, 330
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 3 cut(s) 937, 1072, 1099
EcoT38I GRGCYC 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
ErhI CCWWGG 3 cut(s) 937, 1072, 1099
Esp3I CGTCTC 3 cut(s) 579, 662, 1050
FaeI CATG 6 cut(s) 344, 419, 513, 920, 941, 1076
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 6 cut(s) 340, 415, 509, 916, 937, 1072
FauI CCCGC 1 cut(s) 4
Fnu4HI GCNGC 4 cut(s) 9, 709, 712, 808
FokI GGATG 4 cut(s) 347, 746, 748, 1067
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 9, 709, 712, 808
FspBI CTAG 4 cut(s) 599, 639, 764, 803
GlaI GCGC 2 cut(s) 7, 270
GluI GCNGC 4 cut(s) 9, 709, 712, 808
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 2 cut(s) 185, 807
HgaI GACGC 1 cut(s) 679
HhaI GCGC 2 cut(s) 8, 271
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 6 cut(s) 344, 419, 513, 920, 941, 1076
Hin6I GCGC 2 cut(s) 6, 269
HinP1I GCGC 2 cut(s) 6, 269
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 5 cut(s) 72, 199, 769, 783, 1016
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 6 cut(s) 59, 146, 376, 490, 517, 929
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 6 cut(s) 25, 76, 349, 440, 745, 1049
Hpy8I GTNNAC 6 cut(s) 59, 146, 376, 490, 517, 929
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 4 cut(s) 101, 574, 629, 868
HpyCH4IV ACGT 2 cut(s) 885, 948
HpyCH4V TGCA 7 cut(s) 115, 328, 338, 490, 517, 711, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 93, 496
HpyF3I CTNAG 5 cut(s) 273, 471, 605, 857, 1047
HpySE526I ACGT 2 cut(s) 885, 948
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 6 cut(s) 344, 419, 513, 920, 941, 1076
HspAI GCGC 2 cut(s) 6, 269
KasI GGCGCC 1 cut(s) 5
KspI CCGCGG 1 cut(s) 12
Kzo9I GATC 2 cut(s) 741, 1040
LguI GCTCTTC 1 cut(s) 986
LmnI GCTCC 4 cut(s) 20, 496, 665, 847
Lsp1109I GCAGC 2 cut(s) 695, 723
LweI GCATC 2 cut(s) 178, 325
MaeI CTAG 4 cut(s) 599, 639, 764, 803
MaeII ACGT 2 cut(s) 885, 948
MaeIII GTNAC 5 cut(s) 101, 505, 574, 698, 1076
MalI GATC 2 cut(s) 743, 1042
MboI GATC 2 cut(s) 741, 1040
MhlI GDGCHC 3 cut(s) 17, 492, 519
MluCI AATT 4 cut(s) 79, 344, 352, 689
Mly113I GGCGCC 1 cut(s) 6
MnlI CCTC 4 cut(s) 282, 385, 433, 480
MroXI GAANNNNTTC 1 cut(s) 653
MslI CAYNNNNRTG 2 cut(s) 333, 764
MspA1I CMGCKG 2 cut(s) 11, 1022
MspR9I CCNGG 2 cut(s) 215, 332
MvaI CCWGG 2 cut(s) 215, 332
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 12, 93, 496
NarI GGCGCC 1 cut(s) 6
NcoI CCATGG 2 cut(s) 937, 1072
NdeII GATC 2 cut(s) 741, 1040
NlaIII CATG 6 cut(s) 344, 419, 513, 920, 941, 1076
NlaIV GGNNCC 5 cut(s) 7, 16, 498, 873, 931
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 574, 698
PaeR7I CTCGAG 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 986
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 5 cut(s) 72, 199, 769, 783, 1016
PkrI GCNGC 4 cut(s) 10, 710, 713, 809
PluTI GGCGCC 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 949
Psp6I CCWGG 2 cut(s) 213, 330
PspGI CCWGG 2 cut(s) 213, 330
PspN4I GGNNCC 5 cut(s) 7, 16, 498, 873, 931
PspPI GGNCC 2 cut(s) 929, 1103
PstI CTGCAG 1 cut(s) 713
PvuII CAGCTG 1 cut(s) 1022
RsaI GTAC 2 cut(s) 285, 893
RsaNI GTAC 2 cut(s) 284, 892
RseI CAYNNNNRTG 2 cut(s) 333, 764
SacII CCGCGG 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 986
SatI GCNGC 4 cut(s) 9, 709, 712, 808
Sau3AI GATC 2 cut(s) 741, 1040
Sau96I GGNCC 2 cut(s) 929, 1103
ScaI AGTACT 1 cut(s) 893
ScrFI CCNGG 2 cut(s) 215, 332
SduI GDGCHC 3 cut(s) 17, 492, 519
SfaNI GCATC 2 cut(s) 178, 325
SfcI CTRYAG 2 cut(s) 709, 826
SfoI GGCGCC 1 cut(s) 7
Sfr274I CTCGAG 1 cut(s) 23
Sfr303I CCGCGG 1 cut(s) 12
SgrBI CCGCGG 1 cut(s) 12
SinI GGWCC 2 cut(s) 929, 1103
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 333, 764
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SnaBI TACGTA 1 cut(s) 949
Sse9I AATT 4 cut(s) 79, 344, 352, 689
SsiI CCGC 4 cut(s) 9, 11, 733, 808
SspDI GGCGCC 1 cut(s) 5
SspI AATATT 1 cut(s) 523
SspMI CTAG 4 cut(s) 599, 639, 764, 803
StyD4I CCNGG 2 cut(s) 213, 330
StyI CCWWGG 3 cut(s) 937, 1072, 1099
TaaI ACNGT 4 cut(s) 101, 574, 629, 868
TaiI ACGT 2 cut(s) 888, 951
TaqI TCGA 7 cut(s) 24, 75, 156, 618, 632, 795, 1058
TasI AATT 4 cut(s) 79, 344, 352, 689
TatI WGTACW 2 cut(s) 283, 891
TauI GCSGC 2 cut(s) 11, 810
TfiI GAWTC 5 cut(s) 72, 199, 769, 783, 1016
TscAI CASTG 3 cut(s) 579, 873, 912
TseFI GTSAC 2 cut(s) 574, 698
TseI GCWGC 2 cut(s) 708, 711
Tsp45I GTSAC 2 cut(s) 574, 698
TspDTI ATGAA 6 cut(s) 357, 381, 432, 752, 761, 905
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 3 cut(s) 579, 873, 912
VneI GTGCAC 2 cut(s) 488, 515
VpaK11BI GGWCC 2 cut(s) 929, 1103
XapI RAATTY 3 cut(s) 79, 344, 689
XhoI CTCGAG 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 4 cut(s) 599, 639, 764, 803
ZrmI AGTACT 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.