Rroxscaffold_2G00129770

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010882
Physical Location & Seq
Forward (+)
65822444 .. 65826939
4496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129770.1

Sequence Viewer

Length: 1068 bp
ATGCGAATCGCTGAGTCGAACCGGCGAAAAGAGGATCTGAAATTTGGAATTGGGGGCATTGACTCGGTCCGACGATGGGTGCTGCCGGCTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCCCGAAGGAGAGCGATATTTCGGCCTTGAGAATTTCGGCAATACTTGCTATTGTAACAGCGTTTTGCAGGCGCTTTATTTTTGCGTTCCATTCCGTGAACAGTTGCTAGAATACTATTCCAACAGTAAGAATATTGGGGATGCAGAAGAAAATCTCTTGACATGCTTAGCCGATTTGTTTACGCAGGAGAAAATAAGTTCACAAAAGAAGAAGACAGGTGTAATTGCCCCAAAGCGTTTCGTACAGAGATTGAAGAAACAAAATGAACTCTTTCGTAGCTACATGCATCAGGATGCTCATGAATTCTTAAACTTTTTGCTAAATGAACTTGTCGACATACTGGAGAAAGAAGCACAAGCTGCAAAAAGTGATCAAGAAACTTCTTCACCTCCTGAGAAGCTGGCAAATGGTCCAAAGAATGCTCAAGCTAATGGTTCTCATAAAGATCCCTTAGGAATACTCACCAATGAAACGAGGTGCTTACGGTGTGAGACAGTGACCGCAAGAGATGAAACATTTTTGGACTTGAGCCTTGATATTGAACAGAACAGTTCAATAACAAGCTGTCTGAAAAACTTCAGTTCCACAGAGACATTGAATGCTGAGGACAAATTTTTTTGCGACAAGTGCTGCAGATGGTTATTACCATTGATCGGCACTGTTGGTGCTTATCTTGGTTGTAATGTTACTGAGATAAGGCTTCAAGCATCTAATCTAGATATTGTTCAAGATTGTTGTCCATGTGGGAGTGGTCCAAACCATGGACACTATGTTAGCCTTGTGAAAAGCCATAATCACTGGTTATTTTTTGATGACGAAAATGTGGAGATGATTGATGAGTCTGCTGTGCAAACTTTCTTTGGGTCAGCACAGGAGTATTCGAGTAATACAGATCATGGATACATCCTGTTCTACGAAAGCCTGGGCACCAGTAACAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

355

Amino Acids

40.01

Weight (kDa)

5.32

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 48 - 207 5.8e-29 Ubiquitin carboxyl-terminal hydrolase
UCH_1 PF13423 49 - 252 4.7e-08 Ubiquitin carboxyl-terminal hydrolase
UCH PF00443 289 - 346 3.7e-08 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22310 AT2G22310 AT2G22310 AT4G39910
fragaria_vesca FvH4_1g20720
malus_domestica MD01G1031200.v1.1 MD15G1318500.v1.1
prunus_persica Prupe.6G187800_v2.0.a1
pyrus_communis pycom01g05860 pycom15g28490
rosa_chinensis RchiOBHm_Chr2g0113231
rosa_laevigata RLG00000018049
rosa_multiflora Rmu_sc0006838.1_g000020 Rmu_sc0008490.1_g000004
rosa_roxburghii Rroxscaffold_2G00129520 Rroxscaffold_2G00129770
rosa_rugosa Rorug02G0186000
rosa_samantha Rh2CG244600 Rh2DG248500
rosa_wichuraiana Rw2G018810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1049
AccB7I CCANNNNNTGG 1 cut(s) 884
AccI GTMKAC 1 cut(s) 456
AciI CCGC 1 cut(s) 624
AclWI GGATC 2 cut(s) 42, 563
AcsI RAATTY 4 cut(s) 41, 154, 425, 734
AcuI CTGAAG 1 cut(s) 685
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 3 cut(s) 76, 776, 884
AgsI TTSAA 6 cut(s) 376, 665, 678, 721, 827, 851
AjnI CCWGG 1 cut(s) 1044
AluBI AGCT 6 cut(s) 106, 402, 482, 523, 551, 687
AluI AGCT 6 cut(s) 106, 402, 482, 523, 551, 687
Alw26I GTCTC 2 cut(s) 608, 707
AlwI GGATC 2 cut(s) 42, 563
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 82, 482, 753
ApoI RAATTY 4 cut(s) 41, 154, 425, 734
Asp700I GAANNNNTTC 2 cut(s) 393, 698
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 3 cut(s) 67, 533, 875
AsuHPI GGTGA 2 cut(s) 501, 577
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 3 cut(s) 67, 533, 875
AxyI CCTNAGG 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 1052
BanI GGYRCC 1 cut(s) 1049
BbsI GAAGAC 1 cut(s) 341
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 3 cut(s) 69, 469, 740
BccI CCATC 2 cut(s) 69, 753
BciT130I CCWGG 1 cut(s) 1046
BciVI GTATCC 1 cut(s) 1016
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 2 cut(s) 608, 707
BfaI CTAG 2 cut(s) 230, 839
BfmI CTRYAG 1 cut(s) 754
BfoI RGCGCY 1 cut(s) 197
BfuI GTATCC 1 cut(s) 1016
BisI GCNGC 3 cut(s) 83, 483, 754
BlpI GCTNAGC 1 cut(s) 289
BlsI GCNGC 3 cut(s) 84, 484, 755
Bme1390I CCNGG 1 cut(s) 1046
Bme18I GGWCC 3 cut(s) 67, 533, 875
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 67, 533, 875
BmiI GGNNCC 2 cut(s) 90, 1051
BmrFI CCNGG 1 cut(s) 1046
BmsI GCATC 4 cut(s) 253, 406, 418, 839
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 726
Bpu1102I GCTNAGC 1 cut(s) 289
BpuEI CTTGAG 3 cut(s) 170, 531, 670
BsaJI CCNNGG 2 cut(s) 883, 1045
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 776, 884
Bse118I RCCGGY 2 cut(s) 21, 85
Bse1I ACTGG 4 cut(s) 117, 468, 926, 1053
Bse21I CCTNAGG 1 cut(s) 574
BseBI CCWGG 1 cut(s) 1046
BseDI CCNNGG 2 cut(s) 883, 1045
BseGI GGATG 3 cut(s) 268, 421, 1026
BseLI CCNNNNNNNGG 3 cut(s) 76, 776, 884
BseMII CTCAG 3 cut(s) 507, 717, 804
BseNI ACTGG 4 cut(s) 117, 468, 926, 1053
BseSI GKGCMC 1 cut(s) 1052
BseXI GCAGC 3 cut(s) 69, 469, 740
BshFI GGCC 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 1049
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 22, 86
BslI CCNNNNNNNGG 3 cut(s) 76, 776, 884
BsmAI GTCTC 2 cut(s) 608, 707
BsmI GAATGC 2 cut(s) 547, 727
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 1052
Bsp143I GATC 5 cut(s) 34, 493, 568, 774, 1015
Bsp1720I GCTNAGC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 883
BspACI CCGC 1 cut(s) 624
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 4 cut(s) 4, 508, 718, 805
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 90, 1051
BspMAI CTGCAG 1 cut(s) 758
BspPI GGATC 2 cut(s) 42, 563
BspT107I GGYRCC 1 cut(s) 1049
BsrFI RCCGGY 2 cut(s) 21, 85
BsrI ACTGG 4 cut(s) 117, 468, 926, 1053
BssAI RCCGGY 2 cut(s) 21, 85
BssECI CCNNGG 2 cut(s) 883, 1045
BssMI GATC 5 cut(s) 34, 493, 568, 774, 1015
BssT1I CCWWGG 1 cut(s) 883
Bst2UI CCWGG 1 cut(s) 1046
Bst4CI ACNGT 6 cut(s) 225, 248, 609, 619, 674, 784
BstAPI GCANNNNNTGC 2 cut(s) 168, 482
BstC8I GCNNGC 3 cut(s) 87, 192, 525
BstDEI CTNAG 6 cut(s) 12, 289, 516, 574, 726, 813
BstDSI CCRYGG 1 cut(s) 883
BstF5I GGATG 3 cut(s) 268, 421, 1026
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 5 cut(s) 37, 496, 571, 777, 1018
BstMAI GTCTC 2 cut(s) 608, 707
BstMBI GATC 5 cut(s) 34, 493, 568, 774, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 168, 482, 750
BstNI CCWGG 1 cut(s) 1046
BstNSI RCATGY 2 cut(s) 288, 409
BstSCI CCNGG 1 cut(s) 1044
BstSFI CTRYAG 1 cut(s) 754
BstSLI GKGCMC 1 cut(s) 1052
BstV1I GCAGC 3 cut(s) 69, 469, 740
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 2 cut(s) 34, 568
BstYI RGATCY 2 cut(s) 34, 568
Bsu36I CCTNAGG 1 cut(s) 574
BsuI GTATCC 1 cut(s) 1016
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 883
BtsCI GGATG 3 cut(s) 268, 421, 1026
BtsIMutI CAGTG 3 cut(s) 624, 780, 919
Cac8I GCNNGC 3 cut(s) 87, 192, 525
CciI TCATGA 1 cut(s) 421
CfoI GCGC 1 cut(s) 196
Cfr10I RCCGGY 2 cut(s) 21, 85
Cfr13I GGNCC 3 cut(s) 67, 533, 875
CpoI CGGWCCG 1 cut(s) 67
Csp6I GTAC 1 cut(s) 365
CspI CGGWCCG 1 cut(s) 67
CviAII CATG 6 cut(s) 285, 406, 422, 864, 884, 1019
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 6 cut(s) 12, 289, 516, 574, 726, 813
DpnI GATC 5 cut(s) 36, 495, 570, 776, 1017
DpnII GATC 5 cut(s) 34, 493, 568, 774, 1015
Eco130I CCWWGG 1 cut(s) 883
Eco47I GGWCC 3 cut(s) 67, 533, 875
Eco57I CTGAAG 1 cut(s) 685
Eco81I CCTNAGG 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 1044
EcoT14I CCWWGG 1 cut(s) 883
EcoT22I ATGCAT 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 883
FaeI CATG 6 cut(s) 288, 409, 425, 867, 887, 1022
FatI CATG 6 cut(s) 284, 405, 421, 863, 883, 1018
FbaI TGATCA 1 cut(s) 493
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 3 cut(s) 83, 483, 754
FokI GGATG 3 cut(s) 275, 428, 1013
Fsp4HI GCNGC 3 cut(s) 83, 483, 754
FspBI CTAG 2 cut(s) 230, 839
GlaI GCGC 1 cut(s) 195
GluI GCNGC 3 cut(s) 83, 483, 754
GsuI CTGGAG 1 cut(s) 485
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 147
HapII CCGG 2 cut(s) 22, 86
HhaI GCGC 1 cut(s) 196
Hin1II CATG 6 cut(s) 288, 409, 425, 867, 887, 1022
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 4 cut(s) 6, 14, 62, 962
HpaII CCGG 2 cut(s) 22, 86
HphI GGTGA 2 cut(s) 501, 577
Hpy166II GTNNAC 4 cut(s) 221, 303, 323, 457
Hpy188I TCNGA 3 cut(s) 39, 71, 693
Hpy188III TCNNGA 8 cut(s) 99, 280, 413, 422, 497, 515, 839, 851
Hpy8I GTNNAC 4 cut(s) 221, 303, 323, 457
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 6 cut(s) 225, 248, 609, 619, 674, 784
HpyCH4V TGCA 6 cut(s) 190, 266, 409, 485, 756, 973
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 482, 750
HpyF3I CTNAG 6 cut(s) 12, 289, 516, 574, 726, 813
Hsp92II CATG 6 cut(s) 288, 409, 425, 867, 887, 1022
HspAI GCGC 1 cut(s) 194
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 5 cut(s) 34, 493, 568, 774, 1015
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 3 cut(s) 69, 469, 740
LweI GCATC 4 cut(s) 253, 406, 418, 839
MaeI CTAG 2 cut(s) 230, 839
MaeIII GTNAC 4 cut(s) 176, 619, 808, 1055
MalI GATC 5 cut(s) 36, 495, 570, 776, 1017
MboI GATC 5 cut(s) 34, 493, 568, 774, 1015
MboII GAAGA 5 cut(s) 281, 343, 346, 388, 498
MflI RGATCY 2 cut(s) 34, 568
MhlI GDGCHC 1 cut(s) 1052
MluCI AATT 6 cut(s) 41, 48, 154, 345, 425, 734
MlyI GAGTC 3 cut(s) 23, 56, 971
MmeI TCCRAC 2 cut(s) 94, 267
MnlI CCTC 4 cut(s) 25, 522, 591, 721
Mph1103I ATGCAT 1 cut(s) 411
MroNI GCCGGC 1 cut(s) 85
MroXI GAANNNNTTC 2 cut(s) 393, 698
MseI TTAA 2 cut(s) 431, 1066
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 2 cut(s) 22, 86
MspR9I CCNGG 1 cut(s) 1046
Mva1269I GAATGC 2 cut(s) 547, 727
MvaI CCWGG 1 cut(s) 1046
MwoI GCNNNNNNNGC 3 cut(s) 168, 482, 750
NaeI GCCGGC 1 cut(s) 87
NcoI CCATGG 1 cut(s) 883
NdeII GATC 5 cut(s) 34, 493, 568, 774, 1015
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 6 cut(s) 288, 409, 425, 867, 887, 1022
NlaIV GGNNCC 2 cut(s) 90, 1051
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 619
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 2 cut(s) 288, 409
PaeR7I CTCGAG 1 cut(s) 97
PagI TCATGA 1 cut(s) 421
PctI GAATGC 2 cut(s) 547, 727
PdiI GCCGGC 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 393, 698
PfeI GAWTC 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 884
PkrI GCNGC 3 cut(s) 84, 484, 755
PleI GAGTC 3 cut(s) 22, 56, 970
PpsI GAGTC 3 cut(s) 22, 56, 970
Psp6I CCWGG 1 cut(s) 1044
PspGI CCWGG 1 cut(s) 1044
PspN4I GGNNCC 2 cut(s) 90, 1051
PspPI GGNCC 3 cut(s) 67, 533, 875
PstI CTGCAG 1 cut(s) 758
PsuI RGATCY 2 cut(s) 34, 568
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 414
Rsr2I CGGWCCG 1 cut(s) 67
RsrII CGGWCCG 1 cut(s) 67
SalI GTCGAC 1 cut(s) 455
SaqAI TTAA 2 cut(s) 431, 1066
SatI GCNGC 3 cut(s) 83, 483, 754
Sau3AI GATC 5 cut(s) 34, 493, 568, 774, 1015
Sau96I GGNCC 3 cut(s) 67, 533, 875
SchI GAGTC 3 cut(s) 23, 56, 971
ScrFI CCNGG 1 cut(s) 1046
SduI GDGCHC 1 cut(s) 1052
SetI ASST 9 cut(s) 108, 343, 404, 484, 514, 525, 553, 602, 689
SfaNI GCATC 4 cut(s) 253, 406, 418, 839
SfcI CTRYAG 1 cut(s) 754
Sfr274I CTCGAG 1 cut(s) 97
SinI GGWCC 3 cut(s) 67, 533, 875
SlaI CTCGAG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 4 cut(s) 97, 149, 546, 649
SmoI CTYRAG 4 cut(s) 97, 149, 546, 649
Sse9I AATT 6 cut(s) 41, 48, 154, 345, 425, 734
SsiI CCGC 1 cut(s) 624
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 230, 839
StyD4I CCNGG 1 cut(s) 1044
StyI CCWWGG 1 cut(s) 883
TaaI ACNGT 6 cut(s) 225, 248, 609, 619, 674, 784
TaqI TCGA 4 cut(s) 17, 98, 456, 1004
TaqII GACCGA 1 cut(s) 55
TasI AATT 6 cut(s) 41, 48, 154, 345, 425, 734
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 2 cut(s) 431, 1066
Tru9I TTAA 2 cut(s) 431, 1066
TscAI CASTG 3 cut(s) 624, 787, 926
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 3 cut(s) 82, 482, 753
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 5 cut(s) 402, 438, 462, 606, 648
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 3 cut(s) 624, 787, 926
Tth111I GACNNNGTC 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 884
VpaK11BI GGWCC 3 cut(s) 67, 533, 875
XapI RAATTY 4 cut(s) 41, 154, 425, 734
XbaI TCTAGA 1 cut(s) 838
XceI RCATGY 2 cut(s) 288, 409
XhoI CTCGAG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 2 cut(s) 393, 698
XspI CTAG 2 cut(s) 230, 839
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.