Rmu_sc0006838.1_g000020

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006838.1
OG0010882
Physical Location & Seq
Reverse (-)
55233 .. 59466
4234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006838.1_g000020.1.cds

Sequence Viewer

Length: 1110 bp
atgggtgctgccggctccaaactcgagaaagctctcggcgaccagttccccgaaggcgagccgtatttcggccttgagaatttcggcaatacttgctattgtaacagcgttttgcaggcgctttatttttgcgttccattccgtgaacagttactagaatactattccaacagtaagaatattggggatgcagaagaaaatctcttgacatgcttagccgatttgtttacgcagataagttcacaaaagaagaagacaggtgtaattgccccaaagcgtttcgtacagagattgaagaaacaaaatgaactctttcgtagctacatgcatcaggatgctcatgaattcttaaactttttgctaaatgaacttgtcgacatactggagaaagaagcacaagctgcaaaaagtgatcaagaaacttcttcacctcctgagaaggtggcaaatggtccaaagaatgctcaagctaatggttctcataaagatcccttagttacgtgggtacacaaaaattttcagggaatactcaccaatgaaacgaggtgcttacggtgtgagacagtgaccgcaagagatgaaacatttttggacttgagccttgatattgaacagaacagttcaataacaagctgtctgaaaaacttcagttccacagagacattgaatgctgaggacaaatttttttgtgacaagtgctgcagtttgcaagaagcacagaagaggatgaaaataaagaagccacctcacgttctggtcatacatctgaagcggttcaagtacattgagcagcttggccgttacaaaaagctctcttaccgcgttgtattcccgcttgagctcaagttgagcaacacggttgaagatgcagaggccgagtattctctgtttgcggttgttgtccatgttgggagtggtccaaaccatggacactatgttagccttgtgaaaagccataatcactggttattttttgatgacgaaaatgtggagatgattgatgagtctgctgtgcaaactttctttgggtcagcacaggagtattcgagtaatacagatcatggatacatcctgttctatgaaagcctgggcaccagtaacaagagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH

Protein Analysis

369

Amino Acids

41.94

Weight (kDa)

5.78

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22310 AT2G22310 AT2G22310 AT4G39910
fragaria_vesca FvH4_1g20720
malus_domestica MD01G1031200.v1.1 MD15G1318500.v1.1
prunus_persica Prupe.6G187800_v2.0.a1
pyrus_communis pycom01g05860 pycom15g28490
rosa_chinensis RchiOBHm_Chr2g0113231
rosa_laevigata RLG00000018049
rosa_multiflora Rmu_sc0006838.1_g000020 Rmu_sc0008490.1_g000004
rosa_roxburghii Rroxscaffold_2G00129520 Rroxscaffold_2G00129770
rosa_rugosa Rorug02G0186000
rosa_samantha Rh2CG244600 Rh2DG248500
rosa_wichuraiana Rw2G018810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1091
AccB7I CCANNNNNTGG 1 cut(s) 926
AccI GTMKAC 1 cut(s) 375
AccII CGCG 1 cut(s) 822
AciI CCGC 5 cut(s) 570, 772, 820, 833, 893
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 4 cut(s) 79, 344, 514, 680
AcuI CTGAAG 2 cut(s) 631, 788
AfaI GTAC 3 cut(s) 285, 507, 782
AfiI CCNNNNNNNGG 2 cut(s) 68, 926
AgsI TTSAA 6 cut(s) 295, 611, 624, 667, 778, 863
AjnI CCWGG 1 cut(s) 1086
AluBI AGCT 8 cut(s) 32, 321, 401, 470, 633, 793, 811, 841
AluI AGCT 8 cut(s) 32, 321, 401, 470, 633, 793, 811, 841
Alw21I GWGCWC 1 cut(s) 843
Alw26I GTCTC 2 cut(s) 554, 653
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 3 cut(s) 70, 796, 873
ApeKI GCWGC 4 cut(s) 8, 401, 699, 790
ApoI RAATTY 4 cut(s) 79, 344, 514, 680
Asp700I GAANNNNTTC 3 cut(s) 312, 644, 773
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 452, 917
AsuHPI GGTGA 2 cut(s) 420, 523
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 452, 917
BaeGI GKGCMC 1 cut(s) 1094
BanI GGYRCC 1 cut(s) 1091
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 843
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 3 cut(s) 388, 686, 802
BceAI ACGGC 2 cut(s) 46, 783
BciT130I CCWGG 1 cut(s) 1088
BciVI GTATCC 1 cut(s) 1058
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 554, 653
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 1 cut(s) 122
BfuI GTATCC 1 cut(s) 1058
BisI GCNGC 4 cut(s) 9, 402, 700, 791
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 4 cut(s) 10, 403, 701, 792
Bme1390I CCNGG 1 cut(s) 1088
Bme18I GGWCC 2 cut(s) 452, 917
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 452, 917
BmiI GGNNCC 2 cut(s) 16, 1093
BmrFI CCNGG 1 cut(s) 1088
BmsI GCATC 4 cut(s) 178, 325, 337, 856
BpiI GAAGAC 1 cut(s) 260
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 214
BpuEI CTTGAG 5 cut(s) 95, 450, 616, 827, 857
BsaAI YACGTR 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 925, 1087
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 926
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 4 cut(s) 43, 387, 968, 1095
BseBI CCWGG 1 cut(s) 1088
BseDI CCNNGG 2 cut(s) 925, 1087
BseGI GGATG 4 cut(s) 193, 340, 732, 1068
BseLI CCNNNNNNNGG 2 cut(s) 68, 926
BseMII CTCAG 2 cut(s) 426, 663
BseNI ACTGG 4 cut(s) 43, 387, 968, 1095
BseSI GKGCMC 1 cut(s) 1094
BseXI GCAGC 3 cut(s) 388, 686, 802
Bsh1236I CGCG 1 cut(s) 822
BshFI GGCC 3 cut(s) 72, 798, 875
BshNI GGYRCC 1 cut(s) 1091
BsiHKAI GWGCWC 1 cut(s) 843
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 68, 926
BsmAI GTCTC 2 cut(s) 554, 653
BsmI GAATGC 2 cut(s) 466, 673
BsnI GGCC 3 cut(s) 72, 798, 875
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 843, 1094
Bsp143I GATC 3 cut(s) 412, 487, 1057
Bsp1720I GCTNAGC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 5 cut(s) 570, 772, 820, 833, 893
BspANI GGCC 3 cut(s) 72, 798, 875
BspCNI CTCAG 2 cut(s) 427, 664
BspFNI CGCG 1 cut(s) 822
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 16, 1093
BspMAI CTGCAG 1 cut(s) 704
BspPI GGATC 1 cut(s) 482
BspT107I GGYRCC 1 cut(s) 1091
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 4 cut(s) 43, 387, 968, 1095
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 925, 1087
BssMI GATC 3 cut(s) 412, 487, 1057
BssT1I CCWWGG 1 cut(s) 925
Bst2UI CCWGG 1 cut(s) 1088
Bst4CI ACNGT 6 cut(s) 150, 173, 555, 565, 620, 859
Bst6I CTCTTC 1 cut(s) 716
BstAPI GCANNNNNTGC 2 cut(s) 93, 401
BstBAI YACGTR 1 cut(s) 501
BstC8I GCNNGC 3 cut(s) 13, 59, 117
BstDEI CTNAG 4 cut(s) 214, 435, 493, 672
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 4 cut(s) 193, 340, 732, 1068
BstFNI CGCG 1 cut(s) 822
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 415, 490, 1060
BstMAI GTCTC 2 cut(s) 554, 653
BstMBI GATC 3 cut(s) 412, 487, 1057
BstMWI GCNNNNNNNGC 2 cut(s) 93, 401
BstNI CCWGG 1 cut(s) 1088
BstNSI RCATGY 2 cut(s) 213, 328
BstSCI CCNGG 1 cut(s) 1086
BstSFI CTRYAG 1 cut(s) 700
BstSLI GKGCMC 1 cut(s) 1094
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 3 cut(s) 388, 686, 802
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuI GTATCC 1 cut(s) 1058
BsuRI GGCC 3 cut(s) 72, 798, 875
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 4 cut(s) 193, 340, 732, 1068
BtsIMutI CAGTG 2 cut(s) 570, 961
Cac8I GCNNGC 3 cut(s) 13, 59, 117
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 452, 917
Csp6I GTAC 3 cut(s) 284, 506, 781
CviAII CATG 6 cut(s) 210, 325, 341, 905, 926, 1061
CviQI GTAC 3 cut(s) 284, 506, 781
DdeI CTNAG 4 cut(s) 214, 435, 493, 672
DpnI GATC 3 cut(s) 414, 489, 1059
DpnII GATC 3 cut(s) 412, 487, 1057
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 1 cut(s) 925
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 2 cut(s) 452, 917
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 2 cut(s) 631, 788
Eco88I CYCGRG 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 1086
EcoT14I CCWWGG 1 cut(s) 925
EcoT22I ATGCAT 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 925
FaeI CATG 6 cut(s) 213, 328, 344, 908, 929, 1064
FatI CATG 6 cut(s) 209, 324, 340, 904, 925, 1060
FauI CCCGC 1 cut(s) 840
FbaI TGATCA 1 cut(s) 412
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 4 cut(s) 9, 402, 700, 791
FokI GGATG 4 cut(s) 200, 347, 739, 1055
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 4 cut(s) 9, 402, 700, 791
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 120
GluI GCNGC 4 cut(s) 9, 402, 700, 791
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 3 cut(s) 72, 798, 875
HapII CCGG 1 cut(s) 12
HhaI GCGC 1 cut(s) 121
Hin1II CATG 6 cut(s) 213, 328, 344, 908, 929, 1064
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 1 cut(s) 1004
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 420, 523
Hpy166II GTNNAC 5 cut(s) 146, 228, 242, 376, 508
Hpy188I TCNGA 2 cut(s) 639, 768
Hpy188III TCNNGA 6 cut(s) 25, 205, 332, 341, 416, 434
Hpy8I GTNNAC 5 cut(s) 146, 228, 242, 376, 508
HpyAV CCTTC 2 cut(s) 47, 433
HpyCH4III ACNGT 6 cut(s) 150, 173, 555, 565, 620, 859
HpyCH4IV ACGT 2 cut(s) 500, 750
HpyCH4V TGCA 8 cut(s) 115, 191, 328, 404, 702, 709, 869, 1015
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 401
HpyF3I CTNAG 4 cut(s) 214, 435, 493, 672
HpySE526I ACGT 2 cut(s) 500, 750
Hsp92II CATG 6 cut(s) 213, 328, 344, 908, 929, 1064
HspAI GCGC 1 cut(s) 119
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 412, 487, 1057
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 3 cut(s) 388, 686, 802
LweI GCATC 4 cut(s) 178, 325, 337, 856
MaeI CTAG 1 cut(s) 155
MaeII ACGT 2 cut(s) 500, 750
MaeIII GTNAC 7 cut(s) 101, 150, 496, 565, 689, 800, 1097
MalI GATC 3 cut(s) 414, 489, 1059
MboI GATC 3 cut(s) 412, 487, 1057
MboII GAAGA 7 cut(s) 206, 262, 265, 307, 417, 733, 875
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 2 cut(s) 843, 1094
MluCI AATT 5 cut(s) 79, 264, 344, 514, 680
MlyI GAGTC 1 cut(s) 1013
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 6 cut(s) 441, 537, 667, 717, 756, 865
Mph1103I ATGCAT 1 cut(s) 330
MroNI GCCGGC 1 cut(s) 11
MroXI GAANNNNTTC 3 cut(s) 312, 644, 773
MseI TTAA 2 cut(s) 350, 1108
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 1088
Mva1269I GAATGC 2 cut(s) 466, 673
MvaI CCWGG 1 cut(s) 1088
MvnI CGCG 1 cut(s) 822
MwoI GCNNNNNNNGC 2 cut(s) 93, 401
NaeI GCCGGC 1 cut(s) 13
NcoI CCATGG 1 cut(s) 925
NdeII GATC 3 cut(s) 412, 487, 1057
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 6 cut(s) 213, 328, 344, 908, 929, 1064
NlaIV GGNNCC 2 cut(s) 16, 1093
NmeAIII GCCGAG 2 cut(s) 15, 901
NmuCI GTSAC 2 cut(s) 565, 689
NsiI ATGCAT 1 cut(s) 330
NspI RCATGY 2 cut(s) 213, 328
PaeR7I CTCGAG 1 cut(s) 23
PagI TCATGA 1 cut(s) 340
PctI GAATGC 2 cut(s) 466, 673
PdiI GCCGGC 1 cut(s) 13
PdmI GAANNNNTTC 3 cut(s) 312, 644, 773
PflMI CCANNNNNTGG 1 cut(s) 926
PkrI GCNGC 4 cut(s) 10, 403, 701, 792
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
Ppu21I YACGTR 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 843
Psp6I CCWGG 1 cut(s) 1086
PspGI CCWGG 1 cut(s) 1086
PspN4I GGNNCC 2 cut(s) 16, 1093
PspPI GGNCC 2 cut(s) 452, 917
PstI CTGCAG 1 cut(s) 704
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 3 cut(s) 285, 507, 782
RsaNI GTAC 3 cut(s) 284, 506, 781
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 843
SalI GTCGAC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 350, 1108
SatI GCNGC 4 cut(s) 9, 402, 700, 791
Sau3AI GATC 3 cut(s) 412, 487, 1057
Sau96I GGNCC 2 cut(s) 452, 917
SchI GAGTC 1 cut(s) 1013
ScrFI CCNGG 1 cut(s) 1088
SduI GDGCHC 2 cut(s) 843, 1094
SfaNI GCATC 4 cut(s) 178, 325, 337, 856
SfcI CTRYAG 1 cut(s) 700
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 2 cut(s) 452, 917
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 6 cut(s) 23, 74, 465, 595, 836, 842
SmoI CTYRAG 6 cut(s) 23, 74, 465, 595, 836, 842
Sse9I AATT 5 cut(s) 79, 264, 344, 514, 680
SsiI CCGC 5 cut(s) 570, 772, 820, 833, 893
SspI AATATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 1 cut(s) 1086
StyI CCWWGG 1 cut(s) 925
TaaI ACNGT 6 cut(s) 150, 173, 555, 565, 620, 859
TaiI ACGT 2 cut(s) 503, 753
TaqI TCGA 3 cut(s) 24, 375, 1046
TasI AATT 5 cut(s) 79, 264, 344, 514, 680
TatI WGTACW 1 cut(s) 780
Tru1I TTAA 2 cut(s) 350, 1108
Tru9I TTAA 2 cut(s) 350, 1108
TscAI CASTG 2 cut(s) 570, 968
TseFI GTSAC 2 cut(s) 565, 689
TseI GCWGC 4 cut(s) 8, 401, 699, 790
Tsp45I GTSAC 2 cut(s) 565, 689
TspDTI ATGAA 7 cut(s) 321, 357, 381, 552, 594, 743, 1095
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 2 cut(s) 570, 968
Van91I CCANNNNNTGG 1 cut(s) 926
VpaK11BI GGWCC 2 cut(s) 452, 917
XapI RAATTY 4 cut(s) 79, 344, 514, 680
XceI RCATGY 2 cut(s) 213, 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XhoI CTCGAG 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 3 cut(s) 312, 644, 773
XspI CTAG 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.