AT2G22790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017091
Physical Location & Seq
Forward (+)
9695832 .. 9697127
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22790.1

Sequence Viewer

Length: 978 bp
ATGAATCATCGTCTCGCCGGAATAATTAGCCCACTTGGCCACATTACTACAGATCCAATTCGTTCCTCCTCCGTGAACCCTTCGTCTCCGGTTTACTACAAAACCATTGTTAACCATTTCAAATCTCAAACCGGTAACCACGTTTCACCTGGGCTTACCAATCAAGAGATCTCAGCCGTTGAATCCTCTCATGGTTTCTCTTTCCCTCTTGATCTCCGTTCGATTCTCCAAACCGGTCTTCCGGTTGGTACCAATTTTCCCAATTGGCGAACCGGGTCGAACCGGAATAATCTTCTTCTCCCTCTTCTTAATCTGTCTCAACACGTCGTCAGAAATGGATTCTGGGTCGATTCTTGGGGGATCCGACCCGGAAATGACGCGGAGGCTTTGTCACTCGTGAAGAAATTGATTGAGATCGCTCCGGTACTCGTCCCTGTATACGGCGATTTTTACGTCCCTTCGACGACGCCAAATTTGGCGGGAAATCCAGTTTTCCAAATCGACGGCGACGGAGTTAGGGAATTGAGTTGCGACGTAGTCGGATTTCTCAAGGGAATCGGTCGATCAGAAACGCCGACGGAGGATCGACGACGAAGGAGACGACCACGGAGAGTGGAGTTTTGGAGCGATGTGGCGGAGGGATGGAGATTTGTGGTGGCGCGTGATTACACGCGCGATTGGTGGAGCGCGTTAGGTTTTGAGGGGTTAACGGCGTGTTTGGACGACGCGTTTTGGAAGCTGAGGGAAGCAGGATGGACGGAAGATGATGTTCGCGATATGATGATGATGGACAGCGTAGATCAAAACACGTGTATCCAGCAGCAAACGCAAACGCAATCGCGGGATGTGGTGTACGCGTTTGGCGATGAGGGAATGAACGAAAGAGATAGAGACACGTGTACAGAGGACGAGGATCATCAGAAAGGCGAAGTAACGACGTTGAGGCATTTGTTGCTTTATGATCGTTTGATGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.79

Weight (kDa)

5.42

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 438
AccII CGCG 9 cut(s) 380, 661, 673, 675, 689, 728, 774, 841, 857
AciI CCGC 4 cut(s) 380, 479, 635, 841
AclWI GGATC 5 cut(s) 47, 355, 368, 591, 921
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 472
AcvI CACGTG 2 cut(s) 810, 897
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 4 cut(s) 250, 426, 854, 901
AfiI CCNNNNNNNGG 1 cut(s) 440
AflIII ACRYGT 7 cut(s) 322, 726, 807, 809, 855, 894, 896
AgeI ACCGGT 2 cut(s) 131, 233
AgsI TTSAA 2 cut(s) 121, 182
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 2 cut(s) 739, 975
AluI AGCT 2 cut(s) 739, 975
Alw26I GTCTC 5 cut(s) 17, 90, 321, 592, 885
AlwI GGATC 5 cut(s) 47, 355, 368, 591, 921
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 820
ApoI RAATTY 1 cut(s) 472
ArsI GACNNNNNNTTYG 2 cut(s) 457, 489
AsiGI ACCGGT 2 cut(s) 131, 233
Asp718I GGTACC 1 cut(s) 248
AspLEI GCGC 3 cut(s) 661, 675, 689
AsuC2I CCSGG 2 cut(s) 274, 369
AsuHPI GGTGA 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 796, 829
BalI TGGCCA 1 cut(s) 39
BamHI GGATCC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 248
BauI CACGAG 1 cut(s) 395
BbrPI CACGTG 2 cut(s) 810, 897
BbsI GAAGAC 1 cut(s) 230
BbvCI CCTCAGC 1 cut(s) 740
BbvI GCAGC 1 cut(s) 832
BccI CCATC 3 cut(s) 636, 747, 781
BceAI ACGGC 4 cut(s) 161, 457, 520, 726
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 1 cut(s) 824
BcnI CCSGG 2 cut(s) 274, 369
BcoDI GTCTC 5 cut(s) 17, 90, 321, 592, 885
BfmI CTRYAG 1 cut(s) 48
BfuI GTATCC 1 cut(s) 824
BglI GCCNNNNNGGC 1 cut(s) 36
BglII AGATCT 1 cut(s) 168
BisI GCNGC 1 cut(s) 821
BlsI GCNGC 1 cut(s) 822
Bme1390I CCNGG 3 cut(s) 150, 274, 369
BmgBI CACGTC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 250, 362
BmrFI CCNGG 3 cut(s) 150, 274, 369
BpiI GAAGAC 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 740
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 2 cut(s) 274, 369
BsaAI YACGTR 2 cut(s) 810, 897
BsaBI GATNNNNATC 1 cut(s) 413
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 149, 605
BsaWI WCCGGW 6 cut(s) 88, 131, 233, 241, 282, 421
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse118I RCCGGY 2 cut(s) 131, 233
Bse1I ACTGG 1 cut(s) 488
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 149, 605
BseGI GGATG 3 cut(s) 647, 758, 850
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 2 cut(s) 186, 731
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 832
Bsh1236I CGCG 9 cut(s) 380, 661, 673, 675, 689, 728, 774, 841, 857
Bsh1285I CGRYCG 1 cut(s) 562
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 248
BshTI ACCGGT 2 cut(s) 131, 233
BsiEI CGRYCG 1 cut(s) 562
BsiSI CCGG 9 cut(s) 18, 89, 132, 234, 242, 273, 283, 369, 422
BslFI GGGAC 2 cut(s) 416, 440
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 5 cut(s) 17, 90, 321, 592, 885
BsmBI CGTCTC 3 cut(s) 17, 90, 592
BsmFI GGGAC 2 cut(s) 416, 440
BsnI GGCC 1 cut(s) 39
Bsp1407I TGTACA 1 cut(s) 899
Bsp68I TCGCGA 1 cut(s) 774
BspACI CCGC 4 cut(s) 380, 479, 635, 841
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 185, 732
BspFNI CGCG 9 cut(s) 380, 661, 673, 675, 689, 728, 774, 841, 857
BspLI GGNNCC 2 cut(s) 250, 362
BspPI GGATC 5 cut(s) 47, 355, 368, 591, 921
BspT107I GGYRCC 1 cut(s) 248
BsrFI RCCGGY 2 cut(s) 131, 233
BsrGI TGTACA 1 cut(s) 899
BsrI ACTGG 1 cut(s) 488
BssAI RCCGGY 2 cut(s) 131, 233
BssECI CCNNGG 2 cut(s) 149, 605
BssNAI GTATAC 1 cut(s) 439
BssNI GRCGYC 1 cut(s) 467
BssSI CACGAG 1 cut(s) 395
Bst1107I GTATAC 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 952
BstAUI TGTACA 1 cut(s) 899
BstBAI YACGTR 2 cut(s) 810, 897
BstDEI CTNAG 2 cut(s) 172, 740
BstDSI CCRYGG 1 cut(s) 605
BstEII GGTNACC 1 cut(s) 134
BstF5I GGATG 3 cut(s) 647, 758, 850
BstFNI CGCG 9 cut(s) 380, 661, 673, 675, 689, 728, 774, 841, 857
BstHHI GCGC 3 cut(s) 661, 675, 689
BstMAI GTCTC 5 cut(s) 17, 90, 321, 592, 885
BstMCI CGRYCG 1 cut(s) 562
BstMWI GCNNNNNNNGC 3 cut(s) 36, 826, 952
BstNI CCWGG 1 cut(s) 150
BstPI GGTNACC 1 cut(s) 134
BstSCI CCNGG 3 cut(s) 148, 272, 367
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 9 cut(s) 380, 661, 673, 675, 689, 728, 774, 841, 857
BstV1I GCAGC 1 cut(s) 832
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 3 cut(s) 52, 168, 360
BstYI RGATCY 3 cut(s) 52, 168, 360
BstZ17I GTATAC 1 cut(s) 439
BsuI GTATCC 1 cut(s) 824
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 605
BtgZI GCGATG 2 cut(s) 642, 879
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 3 cut(s) 647, 758, 850
BtuMI TCGCGA 1 cut(s) 774
CfoI GCGC 3 cut(s) 661, 675, 689
Cfr10I RCCGGY 2 cut(s) 131, 233
CseI GACGC 3 cut(s) 386, 475, 734
Csp6I GTAC 4 cut(s) 249, 425, 853, 900
CspAI ACCGGT 2 cut(s) 131, 233
CviAII CATG 1 cut(s) 191
CviJI RGCY 7 cut(s) 30, 39, 154, 176, 386, 739, 975
CviKI_1 RGCY 7 cut(s) 30, 39, 154, 176, 386, 739, 975
CviQI GTAC 4 cut(s) 249, 425, 853, 900
DdeI CTNAG 2 cut(s) 172, 740
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 650
Eco72I CACGTG 2 cut(s) 810, 897
Eco91I GGTNACC 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 148
Esp3I CGTCTC 3 cut(s) 17, 90, 592
FaeI CATG 1 cut(s) 194
FaiI YATR 4 cut(s) 192, 439, 779, 960
FaqI GGGAC 2 cut(s) 416, 440
FatI CATG 1 cut(s) 190
FauI CCCGC 2 cut(s) 472, 834
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 821
FokI GGATG 3 cut(s) 654, 765, 857
Fsp4HI GCNGC 1 cut(s) 821
GlaI GCGC 3 cut(s) 660, 674, 688
GluI GCNGC 1 cut(s) 821
HaeIII GGCC 1 cut(s) 39
HapII CCGG 9 cut(s) 18, 89, 132, 234, 242, 273, 283, 369, 422
HgaI GACGC 3 cut(s) 386, 475, 734
HhaI GCGC 3 cut(s) 661, 675, 689
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 3 cut(s) 659, 673, 687
HinP1I GCGC 3 cut(s) 659, 673, 687
HincII GTYRAC 2 cut(s) 112, 708
HindII GTYRAC 2 cut(s) 112, 708
HinfI GANTC 6 cut(s) 4, 182, 223, 339, 350, 555
HpaI GTTAAC 2 cut(s) 112, 708
HpaII CCGG 9 cut(s) 18, 89, 132, 234, 242, 273, 283, 369, 422
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 7 cut(s) 76, 94, 112, 439, 708, 853, 900
Hpy188I TCNGA 5 cut(s) 332, 365, 542, 568, 921
Hpy188III TCNNGA 4 cut(s) 164, 209, 397, 773
Hpy8I GTNNAC 7 cut(s) 76, 94, 112, 439, 708, 853, 900
HpyAV CCTTC 3 cut(s) 90, 468, 588
HpyCH4IV ACGT 7 cut(s) 141, 324, 453, 534, 809, 896, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 826, 952
HpyF3I CTNAG 2 cut(s) 172, 740
HpySE526I ACGT 7 cut(s) 141, 324, 453, 534, 809, 896, 938
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 3 cut(s) 659, 673, 687
KpnI GGTACC 1 cut(s) 252
KspAI GTTAAC 2 cut(s) 112, 708
LmnI GCTCC 3 cut(s) 424, 624, 684
Lsp1109I GCAGC 1 cut(s) 832
MaeII ACGT 7 cut(s) 141, 324, 453, 534, 809, 896, 938
MaeIII GTNAC 3 cut(s) 134, 390, 931
MboII GAAGA 6 cut(s) 230, 284, 287, 296, 412, 773
MfeI CAATTG 1 cut(s) 262
MflI RGATCY 3 cut(s) 52, 168, 360
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 7 cut(s) 24, 57, 253, 262, 404, 472, 521
MluI ACGCGT 2 cut(s) 726, 855
MluNI TGGCCA 1 cut(s) 39
MmeI TCCRAC 2 cut(s) 388, 520
Mox20I TGGCCA 1 cut(s) 39
MscI TGGCCA 1 cut(s) 39
MseI TTAA 3 cut(s) 111, 309, 707
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 9 cut(s) 18, 89, 132, 234, 242, 273, 283, 369, 422
MspR9I CCNGG 3 cut(s) 150, 274, 369
MunI CAATTG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 9 cut(s) 380, 661, 673, 675, 689, 728, 774, 841, 857
MwoI GCNNNNNNNGC 3 cut(s) 36, 826, 952
NciI CCSGG 2 cut(s) 274, 369
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 2 cut(s) 250, 362
NmuCI GTSAC 1 cut(s) 390
NruI TCGCGA 1 cut(s) 774
PcsI WCGNNNNNNNCGW 2 cut(s) 598, 861
PfeI GAWTC 6 cut(s) 4, 182, 223, 339, 350, 555
PflFI GACNNNGTC 1 cut(s) 536
PinAI ACCGGT 2 cut(s) 131, 233
PkrI GCNGC 1 cut(s) 822
PmaCI CACGTG 2 cut(s) 810, 897
PmlI CACGTG 2 cut(s) 810, 897
Ppu21I YACGTR 2 cut(s) 810, 897
Psp6I CCWGG 1 cut(s) 148
PspCI CACGTG 2 cut(s) 810, 897
PspEI GGTNACC 1 cut(s) 134
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 250, 362
PsuI RGATCY 3 cut(s) 52, 168, 360
PsyI GACNNNGTC 1 cut(s) 536
RruI TCGCGA 1 cut(s) 774
RsaI GTAC 4 cut(s) 250, 426, 854, 901
RsaNI GTAC 4 cut(s) 249, 425, 853, 900
SaqAI TTAA 3 cut(s) 111, 309, 707
SatI GCNGC 1 cut(s) 821
ScrFI CCNGG 3 cut(s) 150, 274, 369
SfcI CTRYAG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 7 cut(s) 24, 57, 253, 262, 404, 472, 521
SsiI CCGC 4 cut(s) 380, 479, 635, 841
StyD4I CCNGG 3 cut(s) 148, 272, 367
TaiI ACGT 7 cut(s) 144, 327, 456, 537, 812, 899, 941
TaqI TCGA 7 cut(s) 221, 278, 348, 461, 501, 562, 586
TaqII GACCGA 1 cut(s) 548
TasI AATT 7 cut(s) 24, 57, 253, 262, 404, 472, 521
TatI WGTACW 1 cut(s) 899
TfiI GAWTC 6 cut(s) 4, 182, 223, 339, 350, 555
Tru1I TTAA 3 cut(s) 111, 309, 707
Tru9I TTAA 3 cut(s) 111, 309, 707
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 1 cut(s) 820
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 2 cut(s) 17, 890
TspGWI ACGGA 6 cut(s) 61, 206, 525, 593, 622, 773
Tth111I GACNNNGTC 1 cut(s) 536
XapI RAATTY 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.