MD02G1194000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0017091
Physical Location & Seq
Reverse (-)
18447912 .. 18448871
960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1194000.v1.1.491

Sequence Viewer

Length: 960 bp
ATGGCACCGTCAGCACCAACCAACCACCACACGATCATCAGCAAGCTGCCACCAAAACCCAACTCCAAATCCACGACTGCCGCACCCAAACAGCCGCTAGTCTGCTTCTCTTTCGCAGCCTACGCCAAGTCCGTCGTAAAACACCTCCACTCCTCACCCCACAACATCCCAATCGAGCAAGGCCTCACCGATCAAGAGCTCGCCTCCCTCGAAGCCGCCTTTGACTTCACCTTCCCACCTGACCTCCGCACCATCCTCCAGGAAGGCCTCCCCGTGGGCCCCGCCTTCCCCAACTGGCGCTCTTCCTCCCACCAACAACTCCGGATCCTCCTCAGCCTCCCATCCCGCAGCCTCCTCAGGCAAGTCTCCAACGGAACCCTCTGGTGCGAGTCGTGGGGTCCGAAGCGTTCACCGCGTCATCGTCATAGTGATGCTGACGTGGCAAACCAGCTGGTGATGAAAGCGCCCGTTCTCGTTCCGATTTACCGGAACTGTTACGTGCCTTCGAGGCCGAACGTGGCGGGGAATCCTGTTTTGTACATTGACGCGGAGAGGGTCAGGGTTCTGAGCTATGACATCACCCGGTTTTTTTGCCAAGAGTTTGGGTTCGTGCACGTGCCCGCGTGGGCCCCAAGGGCAGCGCGGAGGATCGAGTTTTGGAGCGAGGTGGTGGGGCGTGAGGAGACGCGCGGGTGGTGGAGTGGGGAAGACTTGGCGGAATGTTTGGAGGAGGTGTTTTGGAGGCTGAGGGAGGGCGGGTGGAAGGAGGAGGAGGTTAAGGAGATGATGATGATGGACGGCTGTGGTGAGAAGGTGAGAAGTGGGCCCCACATGACGGGAGATGGTTATGAGGAGGCGGGCGTGGAGTGGCGCGTGAAGGTACTGTCTATGGTTTTGTTGCGTGGGGGTTGGACCAAAGAGGATGTGATGGACTCCCTTGGTCTCGAGGGAACAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

35.92

Weight (kDa)

6.57

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 7 cut(s) 415, 548, 623, 643, 688, 690, 873
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 3 cut(s) 319, 332, 656
AcvI CACGTG 1 cut(s) 616
AfaI GTAC 2 cut(s) 539, 882
AfiI CCNNNNNNNGG 2 cut(s) 274, 835
AjiI CACGTC 1 cut(s) 439
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 4 cut(s) 46, 199, 451, 570
AluI AGCT 4 cut(s) 46, 199, 451, 570
Alw21I GWGCWC 2 cut(s) 201, 615
Alw26I GTCTC 3 cut(s) 370, 677, 947
Alw44I GTGCAC 1 cut(s) 611
AlwI GGATC 3 cut(s) 319, 332, 656
Ama87I CYCGRG 1 cut(s) 944
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 6 cut(s) 181, 265, 277, 509, 627, 824
ApaI GGGCCC 3 cut(s) 281, 631, 828
ApaLI GTGCAC 1 cut(s) 611
ApeKI GCWGC 4 cut(s) 46, 116, 348, 638
AspLEI GCGC 5 cut(s) 300, 466, 643, 690, 873
AspS9I GGNCC 8 cut(s) 277, 278, 398, 627, 628, 824, 825, 912
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 8 cut(s) 147, 178, 220, 402, 466, 571, 818, 826
AvaI CYCGRG 1 cut(s) 944
AvaII GGWCC 2 cut(s) 398, 912
AxyI CCTNAGG 1 cut(s) 356
BaeGI GKGCMC 5 cut(s) 281, 615, 621, 631, 828
BamHI GGATCC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 4 cut(s) 201, 281, 631, 828
BbrPI CACGTG 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 201, 615
BbvCI CCTCAGC 2 cut(s) 332, 746
BbvI GCAGC 4 cut(s) 33, 128, 360, 650
BccI CCATC 5 cut(s) 260, 349, 787, 836, 922
BceAI ACGGC 1 cut(s) 814
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 3 cut(s) 370, 677, 947
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 2 cut(s) 301, 467
BglI GCCNNNNNGGC 2 cut(s) 508, 635
BisI GCNGC 7 cut(s) 47, 81, 95, 117, 216, 349, 639
BlsI GCNGC 7 cut(s) 48, 82, 96, 118, 217, 350, 640
Bme1390I CCNGG 2 cut(s) 260, 583
Bme18I GGWCC 2 cut(s) 398, 912
BmeT110I CYCGRG 1 cut(s) 944
BmgBI CACGTC 1 cut(s) 439
BmgT120I GGNCC 8 cut(s) 277, 278, 398, 627, 628, 824, 825, 912
BmrFI CCNGG 2 cut(s) 260, 583
BmsI GCATC 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 2 cut(s) 332, 746
BpuMI CCSGG 1 cut(s) 583
BsaAI YACGTR 2 cut(s) 499, 616
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 3 cut(s) 273, 632, 937
BsaWI WCCGGW 2 cut(s) 321, 486
BsaXI ACNNNNNCTCC 8 cut(s) 134, 164, 228, 258, 719, 743, 749, 773
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 835
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 3 cut(s) 273, 632, 937
BseGI GGATG 4 cut(s) 165, 252, 341, 928
BseLI CCNNNNNNNGG 2 cut(s) 274, 835
BseMII CTCAG 4 cut(s) 346, 370, 557, 737
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 8 cut(s) 142, 320, 344, 695, 743, 782, 785, 866
BseSI GKGCMC 5 cut(s) 281, 615, 621, 631, 828
BseXI GCAGC 4 cut(s) 33, 128, 360, 650
Bsh1236I CGCG 7 cut(s) 415, 548, 623, 643, 688, 690, 873
BshFI GGCC 6 cut(s) 183, 267, 279, 511, 629, 826
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 201, 615
BsiHKCI CYCGRG 1 cut(s) 944
BsiSI CCGG 3 cut(s) 322, 487, 583
BslI CCNNNNNNNGG 2 cut(s) 274, 835
BsmAI GTCTC 3 cut(s) 370, 677, 947
BsmBI CGTCTC 1 cut(s) 677
BsnI GGCC 6 cut(s) 183, 267, 279, 511, 629, 826
Bso31I GGTCTC 1 cut(s) 947
BsoBI CYCGRG 1 cut(s) 944
Bsp120I GGGCCC 3 cut(s) 277, 627, 824
Bsp1286I GDGCHC 6 cut(s) 201, 281, 615, 621, 631, 828
Bsp13I TCCGGA 1 cut(s) 321
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 4 cut(s) 33, 190, 324, 648
BspANI GGCC 6 cut(s) 183, 267, 279, 511, 629, 826
BspCNI CTCAG 4 cut(s) 345, 369, 558, 738
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 7 cut(s) 415, 548, 623, 643, 688, 690, 873
BspPI GGATC 3 cut(s) 319, 332, 656
BspQI GCTCTTC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 947
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 273, 632, 937
BssMI GATC 4 cut(s) 33, 190, 324, 648
BssT1I CCWWGG 2 cut(s) 632, 937
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 9, 494, 885
Bst6I CTCTTC 1 cut(s) 307
BstAUI TGTACA 1 cut(s) 537
BstBAI YACGTR 2 cut(s) 499, 616
BstC8I GCNNGC 4 cut(s) 44, 201, 621, 859
BstDEI CTNAG 4 cut(s) 332, 356, 566, 746
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 4 cut(s) 165, 252, 341, 928
BstFNI CGCG 7 cut(s) 415, 548, 623, 643, 688, 690, 873
BstH2I RGCGCY 2 cut(s) 301, 467
BstHHI GCGC 5 cut(s) 300, 466, 643, 690, 873
BstKTI GATC 4 cut(s) 36, 193, 327, 651
BstMAI GTCTC 3 cut(s) 370, 677, 947
BstMBI GATC 4 cut(s) 33, 190, 324, 648
BstMWI GCNNNNNNNGC 6 cut(s) 11, 122, 412, 440, 508, 635
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 258, 581
BstSLI GKGCMC 5 cut(s) 281, 615, 621, 631, 828
BstUI CGCG 7 cut(s) 415, 548, 623, 643, 688, 690, 873
BstV1I GCAGC 4 cut(s) 33, 128, 360, 650
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 324
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 6 cut(s) 183, 267, 279, 511, 629, 826
BtgI CCRYGG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 4 cut(s) 165, 252, 341, 928
Cac8I GCNNGC 4 cut(s) 44, 201, 621, 859
CfoI GCGC 5 cut(s) 300, 466, 643, 690, 873
Cfr13I GGNCC 8 cut(s) 277, 278, 398, 627, 628, 824, 825, 912
CseI GACGC 3 cut(s) 404, 554, 694
Csp6I GTAC 2 cut(s) 538, 881
CviAII CATG 1 cut(s) 832
CviQI GTAC 2 cut(s) 538, 881
DdeI CTNAG 4 cut(s) 332, 356, 566, 746
DpnI GATC 4 cut(s) 35, 192, 326, 650
DpnII GATC 4 cut(s) 33, 190, 324, 648
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 731
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 632, 937
Eco147I AGGCCT 2 cut(s) 183, 267
Eco24I GRGCYC 4 cut(s) 201, 281, 631, 828
Eco31I GGTCTC 1 cut(s) 947
Eco47I GGWCC 2 cut(s) 398, 912
Eco53kI GAGCTC 1 cut(s) 199
Eco72I CACGTG 1 cut(s) 616
Eco81I CCTNAGG 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 944
EcoICRI GAGCTC 1 cut(s) 199
EcoO109I RGGNCCY 3 cut(s) 278, 628, 825
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 632, 937
EcoT38I GRGCYC 4 cut(s) 201, 281, 631, 828
ErhI CCWWGG 2 cut(s) 632, 937
Esp3I CGTCTC 1 cut(s) 677
FaeI CATG 1 cut(s) 835
FaiI YATR 5 cut(s) 426, 573, 833, 849, 890
FatI CATG 1 cut(s) 831
FauI CCCGC 7 cut(s) 289, 353, 514, 628, 683, 749, 850
Fnu4HI GCNGC 7 cut(s) 47, 81, 95, 117, 216, 349, 639
FokI GGATG 4 cut(s) 152, 239, 328, 935
FriOI GRGCYC 4 cut(s) 201, 281, 631, 828
Fsp4HI GCNGC 7 cut(s) 47, 81, 95, 117, 216, 349, 639
FspBI CTAG 1 cut(s) 98
GlaI GCGC 5 cut(s) 299, 465, 642, 689, 872
GluI GCNGC 7 cut(s) 47, 81, 95, 117, 216, 349, 639
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 2 cut(s) 301, 467
HaeIII GGCC 6 cut(s) 183, 267, 279, 511, 629, 826
HapII CCGG 3 cut(s) 322, 487, 583
HgaI GACGC 3 cut(s) 404, 554, 694
HhaI GCGC 5 cut(s) 300, 466, 643, 690, 873
Hin1II CATG 1 cut(s) 835
Hin6I GCGC 5 cut(s) 298, 464, 641, 688, 871
HinP1I GCGC 5 cut(s) 298, 464, 641, 688, 871
HinfI GANTC 3 cut(s) 389, 526, 932
HpaII CCGG 3 cut(s) 322, 487, 583
HphI GGTGA 8 cut(s) 147, 178, 220, 402, 466, 571, 818, 826
Hpy166II GTNNAC 2 cut(s) 410, 613
Hpy188I TCNGA 3 cut(s) 402, 480, 567
Hpy188III TCNNGA 3 cut(s) 194, 322, 944
Hpy8I GTNNAC 2 cut(s) 410, 613
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 7 cut(s) 241, 257, 295, 513, 757, 805, 871
HpyCH4III ACNGT 3 cut(s) 9, 494, 885
HpyCH4IV ACGT 4 cut(s) 438, 498, 516, 615
HpyCH4V TGCA 1 cut(s) 613
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 122, 412, 440, 508, 635
HpyF3I CTNAG 4 cut(s) 332, 356, 566, 746
HpySE526I ACGT 4 cut(s) 438, 498, 516, 615
Hsp92II CATG 1 cut(s) 835
HspAI GCGC 5 cut(s) 298, 464, 641, 688, 871
Kpn2I TCCGGA 1 cut(s) 321
Kzo9I GATC 4 cut(s) 33, 190, 324, 648
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 660
Lsp1109I GCAGC 4 cut(s) 33, 128, 360, 650
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 98
MaeII ACGT 4 cut(s) 438, 498, 516, 615
MaeIII GTNAC 1 cut(s) 494
MalI GATC 4 cut(s) 35, 192, 326, 650
MboI GATC 4 cut(s) 33, 190, 324, 648
MboII GAAGA 2 cut(s) 294, 719
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 6 cut(s) 201, 281, 615, 621, 631, 828
MlyI GAGTC 2 cut(s) 398, 926
MmeI TCCRAC 2 cut(s) 393, 890
MroI TCCGGA 1 cut(s) 321
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 3 cut(s) 322, 487, 583
MspR9I CCNGG 2 cut(s) 260, 583
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 7 cut(s) 415, 548, 623, 643, 688, 690, 873
MwoI GCNNNNNNNGC 6 cut(s) 11, 122, 412, 440, 508, 635
NciI CCSGG 1 cut(s) 583
NdeII GATC 4 cut(s) 33, 190, 324, 648
NlaIII CATG 1 cut(s) 835
PaeR7I CTCGAG 1 cut(s) 944
PceI AGGCCT 2 cut(s) 183, 267
PciSI GCTCTTC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 207, 398
PfeI GAWTC 1 cut(s) 526
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 7 cut(s) 48, 82, 96, 118, 217, 350, 640
PleI GAGTC 2 cut(s) 397, 926
PmaCI CACGTG 1 cut(s) 616
PmlI CACGTG 1 cut(s) 616
PpsI GAGTC 2 cut(s) 397, 926
Ppu21I YACGTR 2 cut(s) 499, 616
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 258
PspOMI GGGCCC 3 cut(s) 277, 627, 824
PspPI GGNCC 8 cut(s) 277, 278, 398, 627, 628, 824, 825, 912
PsuI RGATCY 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 451
RsaI GTAC 2 cut(s) 539, 882
RsaNI GTAC 2 cut(s) 538, 881
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 7 cut(s) 47, 81, 95, 117, 216, 349, 639
Sau3AI GATC 4 cut(s) 33, 190, 324, 648
Sau96I GGNCC 8 cut(s) 277, 278, 398, 627, 628, 824, 825, 912
SchI GAGTC 2 cut(s) 398, 926
ScrFI CCNGG 2 cut(s) 260, 583
SduI GDGCHC 6 cut(s) 201, 281, 615, 621, 631, 828
SfaNI GCATC 1 cut(s) 421
Sfr274I CTCGAG 1 cut(s) 944
SinI GGWCC 2 cut(s) 398, 912
SlaI CTCGAG 1 cut(s) 944
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 944
SmoI CTYRAG 1 cut(s) 944
SseBI AGGCCT 2 cut(s) 183, 267
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 201
StuI AGGCCT 2 cut(s) 183, 267
StyD4I CCNGG 2 cut(s) 258, 581
StyI CCWWGG 2 cut(s) 632, 937
TaaI ACNGT 3 cut(s) 9, 494, 885
TaiI ACGT 4 cut(s) 441, 501, 519, 618
TaqI TCGA 5 cut(s) 174, 210, 506, 651, 945
TatI WGTACW 1 cut(s) 537
TauI GCSGC 3 cut(s) 83, 97, 218
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TseI GCWGC 4 cut(s) 46, 116, 348, 638
TspDTI ATGAA 1 cut(s) 473
TspGWI ACGGA 2 cut(s) 121, 387
VneI GTGCAC 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 398, 912
XhoI CTCGAG 1 cut(s) 944
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.