Rh2DG218100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017091
Physical Location & Seq
Reverse (-)
20919106 .. 20921393
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG218100.1

Sequence Viewer

Length: 945 bp
ATGGCCAGAAACAGCTCTCAGGCGACTGTCAACAAAAACCTCGTGTGCTTCTCCATCGCCGCTTATGCCAAAATCCTCATCAACCACTTGAAATCCTCTAACATCCCAGTTGAAAGGGGCCTCACCGACGCGGAGCTCGCGTCGATTGAGGCCACCTTCAGTTTCACTTTCCCACCGGACCTCCGGCCCATTCTCCAAGAGGGGCTCCCGGTTGGGCCGGGATTCCCGAACTGGCGGGCATCCTCGCCCCAACAGCTCAACATCCTCCTCAACCTCCCGGCCCTCAGCCTCCTCAAGCAAGTCTCCGAGGGAAGCCTCTGGTGTCCGAGTTGGGGTTCGAGGCCCGACCGCGGAGGAGTCAACGCGGGGTTGGAGAAAGTCAAAGCTCTGTTGAGGAAAGCGCCGGTTTTGGTTCCGGTGTATAGGAACTGTTACATTCCCTGCGAGCCGAATTTGGCGGGAAATCCAGTGTTTTATATAGACTCCCAGAGCGTGAGGGTTCTGAGTTTCGACGTCACAGGGTTCTTCAGGGAGTTTGGAATGTCGCACGCGCCGGCGTGGGCTCCGAAGGAGGCGAGGAGATTGGAGTTTTGGAGCGACGTGGCGGAGGGTGGGGCCACGCGCCGGTGGTGGAGCGGGAAGCTGGGTGGCGGGTGCTTGGATGAGGTGTGCAGGAGGCTGAGGGAGGGAGGGTGGAAGGAGGAGGAGGTTAGGGAGATGATGATGATGGACGGTTGTGGTGGAGAAATGGAGTGTGGGACTCAGGTGATCGGACGGTGGAGGGAGGAGGATGTGGGGTTGTTGTCGTTGGTTTTGTTGCGTGGGGGATGGGCCAGGGAAGATGTGGTGTACTCGCTTGGTCTTCATGACCAGAACATGATAGGGGAGAACGGGGTTGTTGATGAGAACGTAATAACGTATTTAGAGGGTCAGCTTTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

34.76

Weight (kDa)

5.45

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 516
AccBSI CCGCTC 1 cut(s) 636
AccII CGCG 6 cut(s) 131, 140, 351, 365, 551, 622
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 2 cut(s) 142, 511
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 1 cut(s) 851
AfiI CCNNNNNNNGG 3 cut(s) 332, 350, 624
AgsI TTSAA 2 cut(s) 91, 113
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 1 cut(s) 833
AluBI AGCT 6 cut(s) 15, 136, 256, 386, 643, 934
AluI AGCT 6 cut(s) 15, 136, 256, 386, 643, 934
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 9 cut(s) 3, 118, 150, 185, 215, 279, 341, 615, 831
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 3 cut(s) 403, 553, 624
AspS9I GGNCC 8 cut(s) 118, 178, 186, 215, 280, 342, 615, 831
AsuC2I CCSGG 3 cut(s) 209, 219, 278
AsuHPI GGTGA 2 cut(s) 115, 778
AvaII GGWCC 1 cut(s) 178
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 138, 207, 565
BauI CACGAG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 854
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 2 cut(s) 284, 680
BccI CCATC 3 cut(s) 62, 721, 822
BciT130I CCWGG 1 cut(s) 835
BcnI CCSGG 3 cut(s) 209, 219, 278
BcoDI GTCTC 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 404
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 4 cut(s) 209, 219, 278, 835
Bme18I GGWCC 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 8 cut(s) 118, 178, 186, 215, 280, 342, 615, 831
BmiI GGNNCC 5 cut(s) 119, 206, 414, 564, 616
BmrFI CCNGG 4 cut(s) 209, 219, 278, 835
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 854
Bpu10I CCTNAGC 2 cut(s) 284, 680
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 3 cut(s) 209, 219, 278
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 3 cut(s) 306, 349, 834
BsaWI WCCGGW 2 cut(s) 175, 415
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 165, 195, 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 350, 624
Bse118I RCCGGY 3 cut(s) 403, 553, 624
Bse1I ACTGG 3 cut(s) 107, 236, 467
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 3 cut(s) 306, 349, 834
BseGI GGATG 6 cut(s) 102, 239, 261, 667, 796, 833
BseLI CCNNNNNNNGG 3 cut(s) 332, 350, 624
BseMII CTCAG 5 cut(s) 32, 298, 494, 671, 776
BseNI ACTGG 3 cut(s) 107, 236, 467
BseRI GAGGAG 7 cut(s) 257, 281, 369, 592, 716, 719, 800
BseYI CCCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 691
Bsh1236I CGCG 6 cut(s) 131, 140, 351, 365, 551, 622
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 9 cut(s) 5, 120, 152, 187, 217, 281, 343, 617, 833
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 9 cut(s) 176, 184, 209, 218, 278, 404, 416, 554, 625
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 3 cut(s) 332, 350, 624
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 772
BsnI GGCC 9 cut(s) 5, 120, 152, 187, 217, 281, 343, 617, 833
Bsp1286I GDGCHC 3 cut(s) 138, 207, 565
Bsp143I GATC 1 cut(s) 768
BspANI GGCC 9 cut(s) 5, 120, 152, 187, 217, 281, 343, 617, 833
BspCNI CTCAG 5 cut(s) 31, 297, 495, 672, 775
BspFNI CGCG 6 cut(s) 131, 140, 351, 365, 551, 622
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 5 cut(s) 119, 206, 414, 564, 616
BsrBI CCGCTC 1 cut(s) 636
BsrFI RCCGGY 3 cut(s) 403, 553, 624
BsrI ACTGG 3 cut(s) 107, 236, 467
BssAI RCCGGY 3 cut(s) 403, 553, 624
BssECI CCNNGG 3 cut(s) 306, 349, 834
BssMI GATC 1 cut(s) 768
BssNI GRCGYC 1 cut(s) 513
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 4 cut(s) 28, 431, 734, 777
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
BstDEI CTNAG 5 cut(s) 18, 284, 503, 680, 762
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 6 cut(s) 102, 239, 261, 667, 796, 833
BstFNI CGCG 6 cut(s) 131, 140, 351, 365, 551, 622
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 3 cut(s) 403, 553, 624
BstKTI GATC 1 cut(s) 771
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 768
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 3 cut(s) 65, 137, 253
BstNI CCWGG 1 cut(s) 835
BstSCI CCNGG 4 cut(s) 207, 217, 276, 833
BstUI CGCG 6 cut(s) 131, 140, 351, 365, 551, 622
BstV2I GAAGAC 1 cut(s) 854
BsuRI GGCC 9 cut(s) 5, 120, 152, 187, 217, 281, 343, 617, 833
BtgI CCRYGG 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 6 cut(s) 102, 239, 261, 667, 796, 833
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
CciI TCATGA 1 cut(s) 865
CfoI GCGC 3 cut(s) 403, 553, 624
Cfr10I RCCGGY 3 cut(s) 403, 553, 624
Cfr13I GGNCC 8 cut(s) 118, 178, 186, 215, 280, 342, 615, 831
Cfr42I CCGCGG 1 cut(s) 352
CseI GACGC 2 cut(s) 129, 137
Csp6I GTAC 1 cut(s) 850
CviAII CATG 2 cut(s) 866, 877
CviQI GTAC 1 cut(s) 850
DdeI CTNAG 5 cut(s) 18, 284, 503, 680, 762
DpnI GATC 1 cut(s) 770
DpnII GATC 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 620
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 3 cut(s) 138, 207, 565
Eco47I GGWCC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 142, 511
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 833
EcoT38I GRGCYC 3 cut(s) 138, 207, 565
FaeI CATG 2 cut(s) 869, 880
FaiI YATR 6 cut(s) 66, 423, 477, 479, 867, 878
FaqI GGGAC 1 cut(s) 772
FatI CATG 2 cut(s) 865, 876
FauI CCCGC 5 cut(s) 228, 358, 451, 629, 644
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 6 cut(s) 89, 226, 248, 674, 803, 840
FriOI GRGCYC 3 cut(s) 138, 207, 565
Fsp4HI GCNGC 1 cut(s) 60
GlaI GCGC 3 cut(s) 402, 552, 623
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 404
HaeIII GGCC 9 cut(s) 5, 120, 152, 187, 217, 281, 343, 617, 833
HapII CCGG 9 cut(s) 176, 184, 209, 218, 278, 404, 416, 554, 625
HgaI GACGC 2 cut(s) 129, 137
HhaI GCGC 3 cut(s) 403, 553, 624
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 2 cut(s) 869, 880
Hin6I GCGC 3 cut(s) 401, 551, 622
HinP1I GCGC 3 cut(s) 401, 551, 622
HincII GTYRAC 2 cut(s) 31, 361
HindII GTYRAC 2 cut(s) 31, 361
HinfI GANTC 4 cut(s) 222, 357, 482, 760
HpaII CCGG 9 cut(s) 176, 184, 209, 218, 278, 404, 416, 554, 625
HphI GGTGA 2 cut(s) 115, 778
Hpy166II GTNNAC 3 cut(s) 31, 361, 850
Hpy188I TCNGA 5 cut(s) 307, 327, 504, 567, 773
Hpy188III TCNNGA 2 cut(s) 226, 866
Hpy8I GTNNAC 3 cut(s) 31, 361, 850
Hpy99I CGWCG 4 cut(s) 131, 145, 515, 602
HpyAV CCTTC 3 cut(s) 166, 562, 691
HpyCH4III ACNGT 4 cut(s) 28, 431, 734, 777
HpyCH4IV ACGT 4 cut(s) 513, 600, 909, 917
HpyCH4V TGCA 1 cut(s) 672
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 137, 253
HpyF3I CTNAG 5 cut(s) 18, 284, 503, 680, 762
HpySE526I ACGT 4 cut(s) 513, 600, 909, 917
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 2 cut(s) 869, 880
HspAI GCGC 3 cut(s) 401, 551, 622
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
KspI CCGCGG 1 cut(s) 352
Kzo9I GATC 1 cut(s) 768
LmnI GCTCC 5 cut(s) 133, 210, 568, 594, 633
LweI GCATC 1 cut(s) 248
MaeII ACGT 4 cut(s) 513, 600, 909, 917
MaeIII GTNAC 2 cut(s) 431, 514
MalI GATC 1 cut(s) 770
MbiI CCGCTC 1 cut(s) 636
MboI GATC 1 cut(s) 768
MboII GAAGA 3 cut(s) 517, 851, 854
MhlI GDGCHC 3 cut(s) 138, 207, 565
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 451, 940
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 366, 476, 754
MmeI TCCRAC 1 cut(s) 351
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 553
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 9 cut(s) 176, 184, 209, 218, 278, 404, 416, 554, 625
MspR9I CCNGG 4 cut(s) 209, 219, 278, 835
MvaI CCWGG 1 cut(s) 835
MvnI CGCG 6 cut(s) 131, 140, 351, 365, 551, 622
MwoI GCNNNNNNNGC 3 cut(s) 65, 137, 253
NaeI GCCGGC 1 cut(s) 555
NciI CCSGG 3 cut(s) 209, 219, 278
NdeII GATC 1 cut(s) 768
NgoMIV GCCGGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 869, 880
NlaIV GGNNCC 5 cut(s) 119, 206, 414, 564, 616
NmuCI GTSAC 1 cut(s) 514
PagI TCATGA 1 cut(s) 865
PdiI GCCGGC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 3 cut(s) 365, 476, 754
PpsI GAGTC 3 cut(s) 365, 476, 754
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 5 cut(s) 119, 206, 414, 564, 616
PspPI GGNCC 8 cut(s) 118, 178, 186, 215, 280, 342, 615, 831
RsaI GTAC 1 cut(s) 851
RsaNI GTAC 1 cut(s) 850
SacI GAGCTC 1 cut(s) 138
SacII CCGCGG 1 cut(s) 352
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 768
Sau96I GGNCC 8 cut(s) 118, 178, 186, 215, 280, 342, 615, 831
SchI GAGTC 3 cut(s) 366, 476, 754
ScrFI CCNGG 4 cut(s) 209, 219, 278, 835
SduI GDGCHC 3 cut(s) 138, 207, 565
SfaNI GCATC 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 352
SgrAI CRCCGGYG 2 cut(s) 553, 624
SgrBI CCGCGG 1 cut(s) 352
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 2 cut(s) 451, 940
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 4 cut(s) 207, 217, 276, 833
TaaI ACNGT 4 cut(s) 28, 431, 734, 777
TaiI ACGT 4 cut(s) 516, 603, 912, 920
TaqI TCGA 3 cut(s) 143, 338, 510
TasI AATT 2 cut(s) 451, 940
TatI WGTACW 1 cut(s) 849
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 222
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 854
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 841
ZraI GACGTC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.