RLG00000017739

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017091
Physical Location & Seq
Reverse (-)
20630544 .. 20631500
957 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017739

Sequence Viewer

Length: 957 bp
ATGGCAGGAAACAGCTCTCAGGCGACTGTCAACAAAAACCTGGTGTGCTTCTCCATCGCCGCTTATGCCAAAATCCTCATCAACCACTTGAAATCCTCTAACATCCCAGTTGAGAGGGGCCTCACCGACGCGGAGCTCGCGTCGATTGAGGTCACCTTCAGTTTCACTTTCCCTCCGGACCTCCGGCCCATTCTCCAAGAGGGGCTCCCCGTTGGGCCGGGATTCCCGAACTGGCGGGCATCCTCGGCCCAACAGCTCAACATCCTCCTCAACCTCCCGGCCCTCAGCCTCCTCAAGCAAGTCTCCAAGGGAAGCCTCTGGTGTCCGAGTTGGGGTCCGAGGCCCGACCGCGGCGGAGTCAACCCGGGGTTGGAGAAAGTCAAAGCTCTGTTGAGGAAAGCGCCGGTTTTGGTTCCGGTGTATAGGAACTGTTACATTCCCTGCGAGCCGAATTTGGCGGGAAATCCAGTGTTTTATATAGACTCCCAGAGCGTGAGGGTTCTGAGTTTCGACGTCACAGGGTTTTTCAGGGAGTTTGGAATGGCGCACGCGCCGGCGTGGGCTCCGAAGGAGGCGAGGAGGTTGGAGTTTTGGAGCGACGTGGCTGCGGCTGGGGACACGCGCCGGTGGTGGAGCGGGAAGCTAGGTGGCGGGTGCTTGGATGAGGTGTGCAGGAGGCTGAGGGAGGGAGGGTGGAAGGAGGAGGAGGTTAGGGAGATGATGATGATGGACGGTTGTGGTGGAGAAATGGAGTGTGGGACTCAGGTGATCGGGCGGTGGAGGGAGGAGGATGTGGGGTGGCGCGTGGGGTTGTTGTCGTTGGTTTTGTTGCGTGGGGGATGGGCCAGGGAAGATGTGGTGTACTCGCTTGGTCTTCATGACCAGAACATGATAGGGGAGAGCGGGGTTGTCGATGAGAACGTAATACCGTATTTAGAGGGTCAGCTTTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

35.15

Weight (kDa)

5.79

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 516
AccBSI CCGCTC 2 cut(s) 636, 903
AccII CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
AccIII TCCGGA 1 cut(s) 175
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 1 cut(s) 863
AfiI CCNNNNNNNGG 3 cut(s) 332, 350, 370
AgsI TTSAA 1 cut(s) 91
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 2 cut(s) 39, 845
AluBI AGCT 6 cut(s) 15, 136, 256, 386, 643, 946
AluI AGCT 6 cut(s) 15, 136, 256, 386, 643, 946
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 364
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 7 cut(s) 118, 185, 215, 246, 279, 341, 843
ApeKI GCWGC 1 cut(s) 605
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 5 cut(s) 403, 547, 553, 624, 804
AspS9I GGNCC 9 cut(s) 118, 178, 186, 215, 247, 280, 335, 342, 843
AsuC2I CCSGG 4 cut(s) 219, 278, 365, 366
AsuHPI GGTGA 3 cut(s) 115, 145, 778
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 2 cut(s) 178, 335
BanII GRGCYC 3 cut(s) 138, 207, 565
BbsI GAAGAC 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 2 cut(s) 284, 680
BbvI GCAGC 1 cut(s) 592
BccI CCATC 3 cut(s) 62, 721, 834
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 2 cut(s) 41, 847
BcnI CCSGG 4 cut(s) 219, 278, 365, 366
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 644
BfoI RGCGCY 1 cut(s) 404
BisI GCNGC 4 cut(s) 60, 352, 606, 609
BlsI GCNGC 4 cut(s) 61, 353, 607, 610
Bme1390I CCNGG 6 cut(s) 41, 219, 278, 365, 366, 847
Bme18I GGWCC 2 cut(s) 178, 335
BmeT110I CYCGRG 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 9 cut(s) 118, 178, 186, 215, 247, 280, 335, 342, 843
BmiI GGNNCC 5 cut(s) 119, 206, 336, 414, 564
BmrFI CCNGG 6 cut(s) 41, 219, 278, 365, 366, 847
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 866
Bpu10I CCTNAGC 2 cut(s) 284, 680
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 4 cut(s) 219, 278, 365, 366
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 7 cut(s) 243, 306, 338, 349, 364, 365, 846
BsaWI WCCGGW 2 cut(s) 175, 415
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 157, 187, 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 350, 370
Bse118I RCCGGY 3 cut(s) 403, 553, 624
Bse1I ACTGG 3 cut(s) 107, 236, 467
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 2 cut(s) 41, 847
BseDI CCNNGG 7 cut(s) 243, 306, 338, 349, 364, 365, 846
BseGI GGATG 6 cut(s) 102, 239, 261, 667, 796, 845
BseLI CCNNNNNNNGG 3 cut(s) 332, 350, 370
BseMII CTCAG 5 cut(s) 32, 298, 494, 671, 776
BseNI ACTGG 3 cut(s) 107, 236, 467
BseRI GAGGAG 6 cut(s) 257, 281, 592, 716, 719, 800
BseXI GCAGC 1 cut(s) 592
BseYI CCCAGC 1 cut(s) 611
BsgI GTGCAG 1 cut(s) 691
Bsh1236I CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 7 cut(s) 120, 187, 217, 248, 281, 343, 845
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 9 cut(s) 176, 184, 218, 278, 365, 404, 416, 554, 625
BslFI GGGAC 2 cut(s) 629, 772
BslI CCNNNNNNNGG 3 cut(s) 332, 350, 370
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 629, 772
BsnI GGCC 7 cut(s) 120, 187, 217, 248, 281, 343, 845
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 138, 207, 565
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 768
BspANI GGCC 7 cut(s) 120, 187, 217, 248, 281, 343, 845
BspCNI CTCAG 5 cut(s) 31, 297, 495, 672, 775
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 5 cut(s) 119, 206, 336, 414, 564
BsrBI CCGCTC 2 cut(s) 636, 903
BsrFI RCCGGY 3 cut(s) 403, 553, 624
BsrI ACTGG 3 cut(s) 107, 236, 467
BssAI RCCGGY 3 cut(s) 403, 553, 624
BssECI CCNNGG 7 cut(s) 243, 306, 338, 349, 364, 365, 846
BssMI GATC 1 cut(s) 768
BssNI GRCGYC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 41, 847
Bst4CI ACNGT 4 cut(s) 28, 431, 734, 930
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
BstDEI CTNAG 5 cut(s) 18, 284, 503, 680, 762
BstDSI CCRYGG 1 cut(s) 349
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 6 cut(s) 102, 239, 261, 667, 796, 845
BstFNI CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 5 cut(s) 403, 547, 553, 624, 804
BstKTI GATC 1 cut(s) 771
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 768
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 3 cut(s) 65, 137, 245
BstNI CCWGG 2 cut(s) 41, 847
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 6 cut(s) 39, 217, 276, 363, 364, 845
BstUI CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 866
BsuRI GGCC 7 cut(s) 120, 187, 217, 248, 281, 343, 845
BtgI CCRYGG 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 6 cut(s) 102, 239, 261, 667, 796, 845
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
CciI TCATGA 1 cut(s) 877
CfoI GCGC 5 cut(s) 403, 547, 553, 624, 804
Cfr10I RCCGGY 3 cut(s) 403, 553, 624
Cfr13I GGNCC 9 cut(s) 118, 178, 186, 215, 247, 280, 335, 342, 843
Cfr42I CCGCGG 1 cut(s) 352
Cfr9I CCCGGG 1 cut(s) 364
CseI GACGC 2 cut(s) 129, 137
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 1 cut(s) 862
CviAII CATG 2 cut(s) 878, 889
CviQI GTAC 1 cut(s) 862
DdeI CTNAG 5 cut(s) 18, 284, 503, 680, 762
DpnI GATC 1 cut(s) 770
DpnII GATC 1 cut(s) 768
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 3 cut(s) 138, 207, 565
Eco47I GGWCC 2 cut(s) 178, 335
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 364
Eco91I GGTNACC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 39, 845
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 3 cut(s) 138, 207, 565
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 881, 892
FaiI YATR 6 cut(s) 66, 423, 477, 479, 879, 890
FaqI GGGAC 2 cut(s) 629, 772
FatI CATG 2 cut(s) 877, 888
FauI CCCGC 5 cut(s) 228, 451, 629, 644, 896
Fnu4HI GCNGC 4 cut(s) 60, 352, 606, 609
FokI GGATG 6 cut(s) 89, 226, 248, 674, 803, 852
FriOI GRGCYC 3 cut(s) 138, 207, 565
Fsp4HI GCNGC 4 cut(s) 60, 352, 606, 609
FspBI CTAG 1 cut(s) 644
GlaI GCGC 5 cut(s) 402, 546, 552, 623, 803
GluI GCNGC 4 cut(s) 60, 352, 606, 609
GsaI CCCAGC 1 cut(s) 615
HaeII RGCGCY 1 cut(s) 404
HaeIII GGCC 7 cut(s) 120, 187, 217, 248, 281, 343, 845
HapII CCGG 9 cut(s) 176, 184, 218, 278, 365, 404, 416, 554, 625
HgaI GACGC 2 cut(s) 129, 137
HhaI GCGC 5 cut(s) 403, 547, 553, 624, 804
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 2 cut(s) 881, 892
Hin6I GCGC 5 cut(s) 401, 545, 551, 622, 802
HinP1I GCGC 5 cut(s) 401, 545, 551, 622, 802
HincII GTYRAC 2 cut(s) 31, 361
HindII GTYRAC 2 cut(s) 31, 361
HinfI GANTC 4 cut(s) 222, 357, 482, 760
HpaII CCGG 9 cut(s) 176, 184, 218, 278, 365, 404, 416, 554, 625
HphI GGTGA 3 cut(s) 115, 145, 778
Hpy166II GTNNAC 3 cut(s) 31, 361, 862
Hpy188I TCNGA 4 cut(s) 327, 339, 504, 567
Hpy188III TCNNGA 3 cut(s) 176, 226, 878
Hpy8I GTNNAC 3 cut(s) 31, 361, 862
Hpy99I CGWCG 4 cut(s) 131, 145, 515, 602
HpyAV CCTTC 3 cut(s) 166, 562, 691
HpyCH4III ACNGT 4 cut(s) 28, 431, 734, 930
HpyCH4IV ACGT 3 cut(s) 513, 600, 921
HpyCH4V TGCA 1 cut(s) 672
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 137, 245
HpyF3I CTNAG 5 cut(s) 18, 284, 503, 680, 762
HpySE526I ACGT 3 cut(s) 513, 600, 921
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 2 cut(s) 881, 892
HspAI GCGC 5 cut(s) 401, 545, 551, 622, 802
Kpn2I TCCGGA 1 cut(s) 175
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
KspI CCGCGG 1 cut(s) 352
Kzo9I GATC 1 cut(s) 768
LmnI GCTCC 5 cut(s) 133, 210, 568, 594, 633
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 1 cut(s) 248
MabI ACCWGGT 1 cut(s) 39
MaeI CTAG 1 cut(s) 644
MaeII ACGT 3 cut(s) 513, 600, 921
MaeIII GTNAC 3 cut(s) 151, 431, 514
MalI GATC 1 cut(s) 770
MbiI CCGCTC 2 cut(s) 636, 903
MboI GATC 1 cut(s) 768
MboII GAAGA 2 cut(s) 863, 866
MhlI GDGCHC 3 cut(s) 138, 207, 565
MluCI AATT 2 cut(s) 451, 952
MlyI GAGTC 3 cut(s) 366, 476, 754
MmeI TCCRAC 2 cut(s) 351, 564
MreI CGCCGGCG 1 cut(s) 553
MroI TCCGGA 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 553
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 9 cut(s) 176, 184, 218, 278, 365, 404, 416, 554, 625
MspR9I CCNGG 6 cut(s) 41, 219, 278, 365, 366, 847
MvaI CCWGG 2 cut(s) 41, 847
MvnI CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
MwoI GCNNNNNNNGC 3 cut(s) 65, 137, 245
NaeI GCCGGC 1 cut(s) 555
NciI CCSGG 4 cut(s) 219, 278, 365, 366
NdeII GATC 1 cut(s) 768
NgoMIV GCCGGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 881, 892
NlaIV GGNNCC 5 cut(s) 119, 206, 336, 414, 564
NmeAIII GCCGAG 1 cut(s) 224
NmuCI GTSAC 2 cut(s) 151, 514
PagI TCATGA 1 cut(s) 877
PcsI WCGNNNNNNNCGW 1 cut(s) 918
PdiI GCCGGC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 4 cut(s) 61, 353, 607, 610
PleI GAGTC 3 cut(s) 365, 476, 754
PpsI GAGTC 3 cut(s) 365, 476, 754
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 39, 845
PspEI GGTNACC 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 2 cut(s) 39, 845
PspN4I GGNNCC 5 cut(s) 119, 206, 336, 414, 564
PspPI GGNCC 9 cut(s) 118, 178, 186, 215, 247, 280, 335, 342, 843
RsaI GTAC 1 cut(s) 863
RsaNI GTAC 1 cut(s) 862
SacI GAGCTC 1 cut(s) 138
SacII CCGCGG 1 cut(s) 352
SatI GCNGC 4 cut(s) 60, 352, 606, 609
Sau3AI GATC 1 cut(s) 768
Sau96I GGNCC 9 cut(s) 118, 178, 186, 215, 247, 280, 335, 342, 843
SchI GAGTC 3 cut(s) 366, 476, 754
ScrFI CCNGG 6 cut(s) 41, 219, 278, 365, 366, 847
SduI GDGCHC 3 cut(s) 138, 207, 565
SexAI ACCWGGT 1 cut(s) 39
SfaNI GCATC 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 352
SgrAI CRCCGGYG 2 cut(s) 553, 624
SgrBI CCGCGG 1 cut(s) 352
SinI GGWCC 2 cut(s) 178, 335
SmaI CCCGGG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 2 cut(s) 451, 952
SspMI CTAG 1 cut(s) 644
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 6 cut(s) 39, 217, 276, 363, 364, 845
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 4 cut(s) 28, 431, 734, 930
TaiI ACGT 3 cut(s) 516, 603, 924
TaqI TCGA 3 cut(s) 143, 510, 912
TasI AATT 2 cut(s) 451, 952
TatI WGTACW 1 cut(s) 861
TauI GCSGC 3 cut(s) 62, 354, 611
TfiI GAWTC 1 cut(s) 222
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 151, 514
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 2 cut(s) 151, 514
TspDTI ATGAA 1 cut(s) 866
TspMI CCCGGG 1 cut(s) 364
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 2 cut(s) 178, 335
XapI RAATTY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmaI CCCGGG 1 cut(s) 364
XspI CTAG 1 cut(s) 644
ZraI GACGTC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.