Rmu_sc0000332.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000332.1
OG0017091
Physical Location & Seq
Reverse (-)
95399 .. 96355
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000332.1_g000025.1.cds

Sequence Viewer

Length: 957 bp
atggccagaaacagctctcagtcgactgtcaacaaaaacctcgtgtgcttctccatcgccgcttatgccaaaatcctcatcaaccacttgaaatcctctaacatcccagttgaaaggggcctcaccgacgcggagctcgcgtcgattgaggccaccttcagtttcactttcccaccggacctccggcccattctccaagaggggctcccggttgggcccggattcccgaactggcgggcatcctcggcccaacagctcaacatcctcctcaacctcccggccctcagcctcctcaagcaagtctccgagggaagcctctggtgtccgagttggggtccgaggcccgaccgcggcggagtcaacgccgggttggagaaagttaaagctctgttgaggaaagcgccggttttggttccggtgtataggaactgttacattccctgcgagccgaatttggcgggaaatccagtgttttatatagactcccagagcgtgagggttctgagtttcgacgtcacagggttcttcagggagtttggaatggcgcacgcgccggcgtgggctccgaaggaggcgaggaggttggagttttggagcgacgtggcggcgggtggggccacgcgccggtggtggagcgggaagctgggtggcgggtgcttggatgaggtgtgcaggaggctgagggagggagggtggaaggaggaggaggttagggagatgatgatgatggacggttgtggtggagaaatggagtgtgggactcaggtgatcgggcggtggagggaggaggatgtggggtggcgcgtggggttgttgtcgttggttttgttgcgtgggggatgggccagggaagatgtggtgtactcgcttggtcttcatgaccagaacatgataggggagaacgggcttgttgatgagaacgtaataacgtatttagagggtcagctttgtaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.2

Weight (kDa)

5.8

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 516
AccBSI CCGCTC 1 cut(s) 636
AccI GTMKAC 1 cut(s) 23
AccII CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 2 cut(s) 142, 511
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 1 cut(s) 863
AfiI CCNNNNNNNGG 3 cut(s) 332, 350, 624
AgsI TTSAA 2 cut(s) 91, 113
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 1 cut(s) 845
AluBI AGCT 6 cut(s) 15, 136, 256, 386, 643, 946
AluI AGCT 6 cut(s) 15, 136, 256, 386, 643, 946
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 307
ApaI GGGCCC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 5 cut(s) 403, 547, 553, 624, 804
AsuC2I CCSGG 4 cut(s) 209, 219, 278, 367
AsuHPI GGTGA 2 cut(s) 115, 778
AvaII GGWCC 2 cut(s) 178, 335
BaeGI GKGCMC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 4 cut(s) 138, 207, 219, 565
BauI CACGAG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 2 cut(s) 284, 680
BccI CCATC 3 cut(s) 62, 721, 834
BciT130I CCWGG 1 cut(s) 847
BcnI CCSGG 4 cut(s) 209, 219, 278, 367
BcoDI GTCTC 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 404
BisI GCNGC 3 cut(s) 60, 352, 606
BlsI GCNGC 3 cut(s) 61, 353, 607
Bme1390I CCNGG 5 cut(s) 209, 219, 278, 367, 847
Bme18I GGWCC 2 cut(s) 178, 335
BmgBI CACGTC 1 cut(s) 601
BmiI GGNNCC 7 cut(s) 119, 206, 217, 336, 414, 564, 616
BmrFI CCNGG 5 cut(s) 209, 219, 278, 367, 847
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 866
Bpu10I CCTNAGC 2 cut(s) 284, 680
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 4 cut(s) 209, 219, 278, 367
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 5 cut(s) 243, 306, 338, 349, 846
BsaWI WCCGGW 2 cut(s) 175, 415
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 165, 195, 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 350, 624
Bse118I RCCGGY 3 cut(s) 403, 553, 624
Bse1I ACTGG 3 cut(s) 107, 236, 467
BseBI CCWGG 1 cut(s) 847
BseDI CCNNGG 5 cut(s) 243, 306, 338, 349, 846
BseGI GGATG 6 cut(s) 102, 239, 261, 667, 796, 845
BseLI CCNNNNNNNGG 3 cut(s) 332, 350, 624
BseMII CTCAG 5 cut(s) 32, 298, 494, 671, 776
BseNI ACTGG 3 cut(s) 107, 236, 467
BseRI GAGGAG 6 cut(s) 257, 281, 592, 716, 719, 800
BseSI GKGCMC 1 cut(s) 219
BseYI CCCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 691
Bsh1236I CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
Bsh1285I CGRYCG 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 3 cut(s) 332, 350, 624
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 772
Bsp120I GGGCCC 1 cut(s) 215
Bsp1286I GDGCHC 4 cut(s) 138, 207, 219, 565
Bsp143I GATC 1 cut(s) 768
BspCNI CTCAG 5 cut(s) 31, 297, 495, 672, 775
BspFNI CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 7 cut(s) 119, 206, 217, 336, 414, 564, 616
BsrBI CCGCTC 1 cut(s) 636
BsrFI RCCGGY 3 cut(s) 403, 553, 624
BsrI ACTGG 3 cut(s) 107, 236, 467
BssAI RCCGGY 3 cut(s) 403, 553, 624
BssECI CCNNGG 5 cut(s) 243, 306, 338, 349, 846
BssMI GATC 1 cut(s) 768
BssNI GRCGYC 1 cut(s) 513
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 3 cut(s) 28, 431, 734
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
BstDEI CTNAG 5 cut(s) 18, 284, 503, 680, 762
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 6 cut(s) 102, 239, 261, 667, 796, 845
BstFNI CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 5 cut(s) 403, 547, 553, 624, 804
BstKTI GATC 1 cut(s) 771
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 768
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 4 cut(s) 65, 137, 245, 614
BstNI CCWGG 1 cut(s) 847
BstSCI CCNGG 5 cut(s) 207, 217, 276, 365, 845
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
BstV2I GAAGAC 1 cut(s) 866
BtgI CCRYGG 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 6 cut(s) 102, 239, 261, 667, 796, 845
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
CciI TCATGA 1 cut(s) 877
CfoI GCGC 5 cut(s) 403, 547, 553, 624, 804
Cfr10I RCCGGY 3 cut(s) 403, 553, 624
Cfr42I CCGCGG 1 cut(s) 352
CseI GACGC 2 cut(s) 129, 137
Csp6I GTAC 1 cut(s) 862
CviAII CATG 2 cut(s) 878, 889
CviQI GTAC 1 cut(s) 862
DdeI CTNAG 5 cut(s) 18, 284, 503, 680, 762
DpnI GATC 1 cut(s) 770
DpnII GATC 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 4 cut(s) 138, 207, 219, 565
Eco47I GGWCC 2 cut(s) 178, 335
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 142, 511
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 845
EcoT38I GRGCYC 4 cut(s) 138, 207, 219, 565
FaeI CATG 2 cut(s) 881, 892
FaiI YATR 6 cut(s) 66, 423, 477, 479, 879, 890
FaqI GGGAC 1 cut(s) 772
FatI CATG 2 cut(s) 877, 888
FauI CCCGC 5 cut(s) 228, 451, 601, 629, 644
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 60, 352, 606
FokI GGATG 6 cut(s) 89, 226, 248, 674, 803, 852
FriOI GRGCYC 4 cut(s) 138, 207, 219, 565
Fsp4HI GCNGC 3 cut(s) 60, 352, 606
GlaI GCGC 5 cut(s) 402, 546, 552, 623, 803
GluI GCNGC 3 cut(s) 60, 352, 606
GsaI CCCAGC 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 404
HgaI GACGC 2 cut(s) 129, 137
HhaI GCGC 5 cut(s) 403, 547, 553, 624, 804
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 2 cut(s) 881, 892
Hin6I GCGC 5 cut(s) 401, 545, 551, 622, 802
HinP1I GCGC 5 cut(s) 401, 545, 551, 622, 802
HincII GTYRAC 3 cut(s) 24, 31, 361
HindII GTYRAC 3 cut(s) 24, 31, 361
HinfI GANTC 4 cut(s) 222, 357, 482, 760
HphI GGTGA 2 cut(s) 115, 778
Hpy166II GTNNAC 4 cut(s) 24, 31, 361, 862
Hpy188I TCNGA 5 cut(s) 307, 327, 339, 504, 567
Hpy188III TCNNGA 2 cut(s) 226, 878
Hpy8I GTNNAC 4 cut(s) 24, 31, 361, 862
Hpy99I CGWCG 4 cut(s) 131, 145, 515, 602
HpyAV CCTTC 3 cut(s) 166, 562, 691
HpyCH4III ACNGT 3 cut(s) 28, 431, 734
HpyCH4IV ACGT 4 cut(s) 513, 600, 921, 929
HpyCH4V TGCA 1 cut(s) 672
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 137, 245, 614
HpyF3I CTNAG 5 cut(s) 18, 284, 503, 680, 762
HpySE526I ACGT 4 cut(s) 513, 600, 921, 929
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 2 cut(s) 881, 892
HspAI GCGC 5 cut(s) 401, 545, 551, 622, 802
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
KspI CCGCGG 1 cut(s) 352
Kzo9I GATC 1 cut(s) 768
LmnI GCTCC 5 cut(s) 133, 210, 568, 594, 633
LweI GCATC 1 cut(s) 248
MaeII ACGT 4 cut(s) 513, 600, 921, 929
MaeIII GTNAC 2 cut(s) 431, 514
MalI GATC 1 cut(s) 770
MbiI CCGCTC 1 cut(s) 636
MboI GATC 1 cut(s) 768
MboII GAAGA 3 cut(s) 517, 863, 866
MhlI GDGCHC 4 cut(s) 138, 207, 219, 565
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 451, 952
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 366, 476, 754
MmeI TCCRAC 2 cut(s) 351, 564
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 553
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 351
MspR9I CCNGG 5 cut(s) 209, 219, 278, 367, 847
MvaI CCWGG 1 cut(s) 847
MvnI CGCG 6 cut(s) 131, 140, 351, 551, 622, 804
MwoI GCNNNNNNNGC 4 cut(s) 65, 137, 245, 614
NaeI GCCGGC 1 cut(s) 555
NciI CCSGG 4 cut(s) 209, 219, 278, 367
NdeII GATC 1 cut(s) 768
NgoMIV GCCGGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 881, 892
NlaIV GGNNCC 7 cut(s) 119, 206, 217, 336, 414, 564, 616
NmeAIII GCCGAG 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 514
PagI TCATGA 1 cut(s) 877
PdiI GCCGGC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 3 cut(s) 61, 353, 607
PleI GAGTC 3 cut(s) 365, 476, 754
PpsI GAGTC 3 cut(s) 365, 476, 754
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 845
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 845
PspN4I GGNNCC 7 cut(s) 119, 206, 217, 336, 414, 564, 616
PspOMI GGGCCC 1 cut(s) 215
RsaI GTAC 1 cut(s) 863
RsaNI GTAC 1 cut(s) 862
SacI GAGCTC 1 cut(s) 138
SacII CCGCGG 1 cut(s) 352
SalI GTCGAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 60, 352, 606
Sau3AI GATC 1 cut(s) 768
SchI GAGTC 3 cut(s) 366, 476, 754
ScrFI CCNGG 5 cut(s) 209, 219, 278, 367, 847
SduI GDGCHC 4 cut(s) 138, 207, 219, 565
SfaNI GCATC 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 352
SgrAI CRCCGGYG 2 cut(s) 553, 624
SgrBI CCGCGG 1 cut(s) 352
SinI GGWCC 2 cut(s) 178, 335
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 2 cut(s) 451, 952
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 5 cut(s) 207, 217, 276, 365, 845
TaaI ACNGT 3 cut(s) 28, 431, 734
TaiI ACGT 4 cut(s) 516, 603, 924, 932
TaqI TCGA 3 cut(s) 23, 143, 510
TasI AATT 2 cut(s) 451, 952
TatI WGTACW 1 cut(s) 861
TauI GCSGC 3 cut(s) 62, 354, 608
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 866
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 2 cut(s) 178, 335
XapI RAATTY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmiI GTMKAC 1 cut(s) 23
ZraI GACGTC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.