pycom02g15800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0017091
Physical Location & Seq
Reverse (-)
12747681 .. 12748622
942 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g15800.1

Sequence Viewer

Length: 942 bp
ATGGCACCGTCAGCACCAACCAACCACCACACGATCATCAACAAGCTGCCACCAAAACCCAACTCTAAATCCACGACTGCCGCAGCCAAACAGCCGCTAGTCTGCTTCTCCGTCGCAGCCTACGCCAAATCCGTCGTAAAACACCTCCACTCCTCACCCCACAACATCCCAATCGAGCAAGGCCTCACCGATCAAGAGCTCGCCTCCCTCGAAGCCGCCTTTGACTTCACCTTCCCACCTGACCTCCGCACCATCCTCCAGGAAGGCCTCCCCGTGGGCCCCGCGTTCCCCAACTGGCGCTCTTCCTCCCACCAACAACTCCGGATCCTCCTCAGCCTCCCATCCCGAAGCCTCCTCAGGCAAGTCTCCAACGGAACCCTCTGGTGCAAGTCGTGGGGTCCAAAGCGTTGTGATGCTGACGTGGCAAACCAGCTGGTGATGAAAGCGCCGGTTCTCGTTCCGATTTACCGGAACTGTTACGTGCCTTCGAGGCCGAACGTGGCGGGGAATCCAGTTTTCTACATTGACGCGGAGAGGGTCAGGGTTCTGAGCTGTGACATCACCCGGTTTTTTTGCCAAGAGTTTGGGTTCGTGCACGTGCCCGCATGGGCCCCAAAGGCAGCGCGGAGGATCGAGTTTTGGAGCGAGGTGGTGGGGCGTGAGGAGACGCGCGGGTGGTGGAGTGGGGAGGACTTGGCGGAATGTTTGGAGGAGGTGTTTTGGAGGCTGAGGGAGGGCGGGTGGAAGGAGGAGGAGGTTAAGGAGATGATGATGATGGACGGCTGTGGTGAGAAGGTGAGAAGTGGGCCCCACATGACGGGAGATAGTTATGACGAGGTGGGCGTGGGGTGGCGCGTGAAGGTACTGTCTATGGTTTTGTTGCGTGGGGGTTGGACCAAAGAGGATGCGATGGACTCCCTTGGTCTCGAGGGAACGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

35.01

Weight (kDa)

6.72

Isoelectric Point (pI)

60.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 6 cut(s) 284, 530, 625, 670, 672, 855
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 3 cut(s) 319, 332, 638
AcvI CACGTG 1 cut(s) 598
AfaI GTAC 1 cut(s) 864
AfiI CCNNNNNNNGG 2 cut(s) 274, 817
AjiI CACGTC 1 cut(s) 421
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 4 cut(s) 46, 199, 433, 552
AluI AGCT 4 cut(s) 46, 199, 433, 552
Alw21I GWGCWC 2 cut(s) 201, 597
Alw26I GTCTC 3 cut(s) 370, 659, 929
Alw44I GTGCAC 1 cut(s) 593
AlwI GGATC 3 cut(s) 319, 332, 638
Ama87I CYCGRG 1 cut(s) 926
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 6 cut(s) 181, 265, 277, 491, 609, 806
ApaI GGGCCC 3 cut(s) 281, 613, 810
ApaLI GTGCAC 1 cut(s) 593
ApeKI GCWGC 4 cut(s) 46, 83, 116, 620
AspLEI GCGC 5 cut(s) 300, 448, 625, 672, 855
AspS9I GGNCC 8 cut(s) 277, 278, 398, 609, 610, 806, 807, 894
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 7 cut(s) 147, 178, 220, 448, 553, 800, 808
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 2 cut(s) 398, 894
AxyI CCTNAGG 1 cut(s) 356
BaeGI GKGCMC 5 cut(s) 281, 597, 603, 613, 810
BamHI GGATCC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 4 cut(s) 201, 281, 613, 810
BbrPI CACGTG 1 cut(s) 598
Bbv12I GWGCWC 2 cut(s) 201, 597
BbvCI CCTCAGC 2 cut(s) 332, 728
BbvI GCAGC 4 cut(s) 33, 95, 128, 632
BccI CCATC 4 cut(s) 260, 349, 769, 904
BceAI ACGGC 1 cut(s) 796
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 3 cut(s) 370, 659, 929
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 2 cut(s) 301, 449
BglI GCCNNNNNGGC 2 cut(s) 490, 617
BisI GCNGC 7 cut(s) 47, 81, 84, 95, 117, 216, 621
BlsI GCNGC 7 cut(s) 48, 82, 85, 96, 118, 217, 622
Bme1390I CCNGG 2 cut(s) 260, 565
Bme18I GGWCC 2 cut(s) 398, 894
BmeT110I CYCGRG 1 cut(s) 926
BmgBI CACGTC 1 cut(s) 421
BmgT120I GGNCC 8 cut(s) 277, 278, 398, 609, 610, 806, 807, 894
BmrFI CCNGG 2 cut(s) 260, 565
BmsI GCATC 2 cut(s) 403, 895
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 2 cut(s) 332, 728
BpuMI CCSGG 1 cut(s) 565
BsaAI YACGTR 2 cut(s) 481, 598
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 2 cut(s) 273, 919
BsaWI WCCGGW 2 cut(s) 321, 468
BsaXI ACNNNNNCTCC 8 cut(s) 134, 164, 228, 258, 701, 725, 731, 755
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 817
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 2 cut(s) 299, 512
Bse21I CCTNAGG 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 273, 919
BseGI GGATG 4 cut(s) 165, 252, 341, 910
BseLI CCNNNNNNNGG 2 cut(s) 274, 817
BseMII CTCAG 4 cut(s) 346, 370, 539, 719
BseNI ACTGG 2 cut(s) 299, 512
BseRI GAGGAG 7 cut(s) 142, 320, 344, 677, 725, 764, 767
BseSI GKGCMC 5 cut(s) 281, 597, 603, 613, 810
BseXI GCAGC 4 cut(s) 33, 95, 128, 632
Bsh1236I CGCG 6 cut(s) 284, 530, 625, 670, 672, 855
BshFI GGCC 6 cut(s) 183, 267, 279, 493, 611, 808
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 201, 597
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 4 cut(s) 322, 449, 469, 565
BslI CCNNNNNNNGG 2 cut(s) 274, 817
BsmAI GTCTC 3 cut(s) 370, 659, 929
BsmBI CGTCTC 1 cut(s) 659
BsnI GGCC 6 cut(s) 183, 267, 279, 493, 611, 808
Bso31I GGTCTC 1 cut(s) 929
BsoBI CYCGRG 1 cut(s) 926
Bsp120I GGGCCC 3 cut(s) 277, 609, 806
Bsp1286I GDGCHC 6 cut(s) 201, 281, 597, 603, 613, 810
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 4 cut(s) 33, 190, 324, 630
BspANI GGCC 6 cut(s) 183, 267, 279, 493, 611, 808
BspCNI CTCAG 4 cut(s) 345, 369, 540, 720
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 6 cut(s) 284, 530, 625, 670, 672, 855
BspPI GGATC 3 cut(s) 319, 332, 638
BspQI GCTCTTC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 929
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 2 cut(s) 299, 512
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 273, 919
BssMI GATC 4 cut(s) 33, 190, 324, 630
BssT1I CCWWGG 1 cut(s) 919
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 9, 476, 867
Bst6I CTCTTC 1 cut(s) 307
BstBAI YACGTR 2 cut(s) 481, 598
BstC8I GCNNGC 2 cut(s) 201, 603
BstDEI CTNAG 4 cut(s) 332, 356, 548, 728
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 4 cut(s) 165, 252, 341, 910
BstFNI CGCG 6 cut(s) 284, 530, 625, 670, 672, 855
BstH2I RGCGCY 2 cut(s) 301, 449
BstHHI GCGC 5 cut(s) 300, 448, 625, 672, 855
BstKTI GATC 4 cut(s) 36, 193, 327, 633
BstMAI GTCTC 3 cut(s) 370, 659, 929
BstMBI GATC 4 cut(s) 33, 190, 324, 630
BstMWI GCNNNNNNNGC 5 cut(s) 11, 122, 422, 490, 617
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 258, 563
BstSLI GKGCMC 5 cut(s) 281, 597, 603, 613, 810
BstUI CGCG 6 cut(s) 284, 530, 625, 670, 672, 855
BstV1I GCAGC 4 cut(s) 33, 95, 128, 632
BstX2I RGATCY 1 cut(s) 324
BstXI CCANNNNNNTGG 1 cut(s) 584
BstYI RGATCY 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 6 cut(s) 183, 267, 279, 493, 611, 808
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 923
BtrI CACGTC 1 cut(s) 421
BtsCI GGATG 4 cut(s) 165, 252, 341, 910
Cac8I GCNNGC 2 cut(s) 201, 603
CfoI GCGC 5 cut(s) 300, 448, 625, 672, 855
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 8 cut(s) 277, 278, 398, 609, 610, 806, 807, 894
CseI GACGC 2 cut(s) 536, 676
Csp6I GTAC 1 cut(s) 863
CviAII CATG 2 cut(s) 606, 814
CviQI GTAC 1 cut(s) 863
DdeI CTNAG 4 cut(s) 332, 356, 548, 728
DpnI GATC 4 cut(s) 35, 192, 326, 632
DpnII GATC 4 cut(s) 33, 190, 324, 630
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 713
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 919
Eco147I AGGCCT 2 cut(s) 183, 267
Eco24I GRGCYC 4 cut(s) 201, 281, 613, 810
Eco31I GGTCTC 1 cut(s) 929
Eco47I GGWCC 2 cut(s) 398, 894
Eco53kI GAGCTC 1 cut(s) 199
Eco72I CACGTG 1 cut(s) 598
Eco81I CCTNAGG 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 926
EcoICRI GAGCTC 1 cut(s) 199
EcoO109I RGGNCCY 3 cut(s) 278, 610, 807
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 919
EcoT38I GRGCYC 4 cut(s) 201, 281, 613, 810
ErhI CCWWGG 1 cut(s) 919
Esp3I CGTCTC 1 cut(s) 659
FaeI CATG 2 cut(s) 609, 817
FaiI YATR 4 cut(s) 607, 815, 831, 872
FatI CATG 2 cut(s) 605, 813
FauI CCCGC 5 cut(s) 289, 496, 610, 665, 731
Fnu4HI GCNGC 7 cut(s) 47, 81, 84, 95, 117, 216, 621
FokI GGATG 4 cut(s) 152, 239, 328, 917
FriOI GRGCYC 4 cut(s) 201, 281, 613, 810
Fsp4HI GCNGC 7 cut(s) 47, 81, 84, 95, 117, 216, 621
FspBI CTAG 1 cut(s) 98
GlaI GCGC 5 cut(s) 299, 447, 624, 671, 854
GluI GCNGC 7 cut(s) 47, 81, 84, 95, 117, 216, 621
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 2 cut(s) 301, 449
HaeIII GGCC 6 cut(s) 183, 267, 279, 493, 611, 808
HapII CCGG 4 cut(s) 322, 449, 469, 565
HgaI GACGC 2 cut(s) 536, 676
HhaI GCGC 5 cut(s) 300, 448, 625, 672, 855
Hin1II CATG 2 cut(s) 609, 817
Hin6I GCGC 5 cut(s) 298, 446, 623, 670, 853
HinP1I GCGC 5 cut(s) 298, 446, 623, 670, 853
HinfI GANTC 2 cut(s) 508, 914
HpaII CCGG 4 cut(s) 322, 449, 469, 565
HphI GGTGA 7 cut(s) 147, 178, 220, 448, 553, 800, 808
Hpy166II GTNNAC 1 cut(s) 595
Hpy188I TCNGA 2 cut(s) 462, 549
Hpy188III TCNNGA 4 cut(s) 194, 322, 345, 926
Hpy8I GTNNAC 1 cut(s) 595
Hpy99I CGWCG 2 cut(s) 116, 137
HpyAV CCTTC 6 cut(s) 241, 257, 495, 739, 787, 853
HpyCH4III ACNGT 3 cut(s) 9, 476, 867
HpyCH4IV ACGT 4 cut(s) 420, 480, 498, 597
HpyCH4V TGCA 2 cut(s) 387, 595
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 122, 422, 490, 617
HpyF3I CTNAG 4 cut(s) 332, 356, 548, 728
HpySE526I ACGT 4 cut(s) 420, 480, 498, 597
Hsp92II CATG 2 cut(s) 609, 817
HspAI GCGC 5 cut(s) 298, 446, 623, 670, 853
Kpn2I TCCGGA 1 cut(s) 321
Kzo9I GATC 4 cut(s) 33, 190, 324, 630
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 642
Lsp1109I GCAGC 4 cut(s) 33, 95, 128, 632
LweI GCATC 2 cut(s) 403, 895
MaeI CTAG 1 cut(s) 98
MaeII ACGT 4 cut(s) 420, 480, 498, 597
MaeIII GTNAC 2 cut(s) 476, 554
MalI GATC 4 cut(s) 35, 192, 326, 632
MboI GATC 4 cut(s) 33, 190, 324, 630
MboII GAAGA 1 cut(s) 294
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 6 cut(s) 201, 281, 597, 603, 613, 810
MlyI GAGTC 1 cut(s) 908
MmeI TCCRAC 2 cut(s) 393, 872
MroI TCCGGA 1 cut(s) 321
MseI TTAA 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 433
MspI CCGG 4 cut(s) 322, 449, 469, 565
MspR9I CCNGG 2 cut(s) 260, 565
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 6 cut(s) 284, 530, 625, 670, 672, 855
MwoI GCNNNNNNNGC 5 cut(s) 11, 122, 422, 490, 617
NciI CCSGG 1 cut(s) 565
NdeII GATC 4 cut(s) 33, 190, 324, 630
NlaIII CATG 2 cut(s) 609, 817
NmuCI GTSAC 1 cut(s) 554
PaeR7I CTCGAG 1 cut(s) 926
PceI AGGCCT 2 cut(s) 183, 267
PciSI GCTCTTC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 207, 840
PfeI GAWTC 1 cut(s) 508
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 7 cut(s) 48, 82, 85, 96, 118, 217, 622
PleI GAGTC 1 cut(s) 908
PmaCI CACGTG 1 cut(s) 598
PmlI CACGTG 1 cut(s) 598
PpsI GAGTC 1 cut(s) 908
Ppu21I YACGTR 2 cut(s) 481, 598
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 258
PspOMI GGGCCC 3 cut(s) 277, 609, 806
PspPI GGNCC 8 cut(s) 277, 278, 398, 609, 610, 806, 807, 894
PsuI RGATCY 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 433
RsaI GTAC 1 cut(s) 864
RsaNI GTAC 1 cut(s) 863
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 7 cut(s) 47, 81, 84, 95, 117, 216, 621
Sau3AI GATC 4 cut(s) 33, 190, 324, 630
Sau96I GGNCC 8 cut(s) 277, 278, 398, 609, 610, 806, 807, 894
SchI GAGTC 1 cut(s) 908
ScrFI CCNGG 2 cut(s) 260, 565
SduI GDGCHC 6 cut(s) 201, 281, 597, 603, 613, 810
SfaNI GCATC 2 cut(s) 403, 895
Sfr274I CTCGAG 1 cut(s) 926
SinI GGWCC 2 cut(s) 398, 894
SlaI CTCGAG 1 cut(s) 926
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
SseBI AGGCCT 2 cut(s) 183, 267
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 201
StuI AGGCCT 2 cut(s) 183, 267
StyD4I CCNGG 2 cut(s) 258, 563
StyI CCWWGG 1 cut(s) 919
TaaI ACNGT 3 cut(s) 9, 476, 867
TaiI ACGT 4 cut(s) 423, 483, 501, 600
TaqI TCGA 5 cut(s) 174, 210, 488, 633, 927
TauI GCSGC 3 cut(s) 83, 97, 218
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 4 cut(s) 46, 83, 116, 620
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 3 cut(s) 100, 121, 387
VneI GTGCAC 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 398, 894
XhoI CTCGAG 1 cut(s) 926
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.