MD15G1304100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017091
Physical Location & Seq
Reverse (-)
29565410 .. 29565760
351 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1304100.v1.1.491

Sequence Viewer

Length: 351 bp
ATGCACGTGCCTGTGTGGGCCCCCAAGGTGGCGCGGAGGATCGAATTTTGGAGCGATGTGGCGGCGCGTGAGGAGAGGCGCGGGTGGTGGAGTAGTTATAAGTTGGTGGAATGTTTGAAGGAGGTGTTTTGGAGGCTGAGGGAGGGCGGGTGGGAAGAGGAAGAGGTTAGGGAGATGATGATGATGGATGGCTATGGTGAGAAGATGAGAAGTGGGCCCTACGCAATGGGAGATGGCAATGACTTGGCGGGAGTGGGGTGGCGCGTGAAGGTGCTGTCTAGGGTTTTGTTGCGTGGGGGTTGGACCAAAGAGGATGTGATAGACTCCTTTGGTCTTGAGGGAACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.54

Weight (kDa)

5.34

Isoelectric Point (pI)

63.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccII CGCG 4 cut(s) 34, 67, 81, 264
AciI CCGC 5 cut(s) 34, 62, 81, 147, 248
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 44
AcvI CACGTG 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 118
AlwI GGATC 1 cut(s) 47
AoxI GGCC 2 cut(s) 18, 215
ApaI GGGCCC 2 cut(s) 22, 219
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 4 cut(s) 34, 67, 81, 264
AspS9I GGNCC 5 cut(s) 18, 19, 215, 216, 303
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 303
BaeGI GKGCMC 2 cut(s) 22, 219
BanII GRGCYC 2 cut(s) 22, 219
BbrPI CACGTG 1 cut(s) 7
BbvCI CCTCAGC 1 cut(s) 137
BccI CCATC 3 cut(s) 178, 182, 227
BfaI CTAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 303
BmgT120I GGNCC 5 cut(s) 18, 19, 215, 216, 303
BmiI GGNNCC 3 cut(s) 20, 21, 217
Bpu10I CCTNAGC 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse3DI GCAATG 2 cut(s) 231, 244
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 193, 319
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 2 cut(s) 231, 244
BseMII CTCAG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 2 cut(s) 22, 219
Bsh1236I CGCG 4 cut(s) 34, 67, 81, 264
BshFI GGCC 2 cut(s) 20, 217
BslI CCNNNNNNNGG 1 cut(s) 28
BsnI GGCC 2 cut(s) 20, 217
Bsp120I GGGCCC 2 cut(s) 18, 215
Bsp1286I GDGCHC 2 cut(s) 22, 219
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 5 cut(s) 34, 62, 81, 147, 248
BspANI GGCC 2 cut(s) 20, 217
BspCNI CTCAG 1 cut(s) 129
BspFNI CGCG 4 cut(s) 34, 67, 81, 264
BspLI GGNNCC 3 cut(s) 20, 21, 217
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 231, 244
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 150, 156
BstBAI YACGTR 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 193, 319
BstFNI CGCG 4 cut(s) 34, 67, 81, 264
BstHHI GCGC 4 cut(s) 34, 67, 81, 264
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstSLI GKGCMC 2 cut(s) 22, 219
BstUI CGCG 4 cut(s) 34, 67, 81, 264
BsuRI GGCC 2 cut(s) 20, 217
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 193, 319
CfoI GCGC 4 cut(s) 34, 67, 81, 264
Cfr13I GGNCC 5 cut(s) 18, 19, 215, 216, 303
CviJI RGCY 4 cut(s) 20, 136, 192, 217
CviKI_1 RGCY 4 cut(s) 20, 136, 192, 217
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 150, 156
EarI CTCTTC 2 cut(s) 150, 156
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 2 cut(s) 22, 219
Eco47I GGWCC 1 cut(s) 303
Eco72I CACGTG 1 cut(s) 7
EcoO109I RGGNCCY 2 cut(s) 19, 216
EcoT14I CCWWGG 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 22, 219
ErhI CCWWGG 1 cut(s) 24
FaiI YATR 2 cut(s) 99, 195
FauI CCCGC 3 cut(s) 74, 140, 241
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 200, 326
FriOI GRGCYC 2 cut(s) 22, 219
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 279
GlaI GCGC 4 cut(s) 33, 66, 80, 263
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 20, 217
HhaI GCGC 4 cut(s) 34, 67, 81, 264
Hin6I GCGC 4 cut(s) 32, 65, 79, 262
HinP1I GCGC 4 cut(s) 32, 65, 79, 262
HinfI GANTC 1 cut(s) 323
HphI GGTGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 112, 262
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 6
HspAI GCGC 4 cut(s) 32, 65, 79, 262
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 1 cut(s) 24
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 6
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 167, 173, 214
MhlI GDGCHC 2 cut(s) 22, 219
MluCI AATT 1 cut(s) 44
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 281
MvnI CGCG 4 cut(s) 34, 67, 81, 264
NdeII GATC 1 cut(s) 39
NlaIV GGNNCC 3 cut(s) 20, 21, 217
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 317
PmaCI CACGTG 1 cut(s) 7
PmlI CACGTG 1 cut(s) 7
PpsI GAGTC 1 cut(s) 317
Ppu21I YACGTR 1 cut(s) 7
PsiI TTATAA 1 cut(s) 99
PspCI CACGTG 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 20, 21, 217
PspOMI GGGCCC 2 cut(s) 18, 215
PspPI GGNCC 5 cut(s) 18, 19, 215, 216, 303
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 5 cut(s) 18, 19, 215, 216, 303
SchI GAGTC 1 cut(s) 317
SduI GDGCHC 2 cut(s) 22, 219
SetI ASST 5 cut(s) 9, 30, 126, 168, 273
SinI GGWCC 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 1 cut(s) 44
SsiI CCGC 5 cut(s) 34, 62, 81, 147, 248
SspMI CTAG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 44
TauI GCSGC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 303
XapI RAATTY 1 cut(s) 44
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.