FvH4_1g18640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017091
Physical Location & Seq
Reverse (-)
10965827 .. 10966765
939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18640.t1

Sequence Viewer

Length: 939 bp
ATGGCCAAAAACATTTCTCAGTCGAATGTCAAGAAACACATGGTGTGCTTCTCCTACGCAGCCTACGCCAAAATCCTCATCAACCACTTGAAATCTACGGATATTCCGATCGAGAGAGGCCTCAGCGACGCGGAGCTCGCGTCTATTGAGGCCACCTTCAGCTTCACTTTCCCTCCTGACCTCCGGTACATTCTGCAAGAGGGCCTTCCGGTTGGGCCGGGATTCCCAAACTGGCGGGCATCCTCGGCCCAACAGCTCAACGTTATCCTCAACCTCCCGGCCCTCGGCCTCTTTAAGCAGGTCTCCGAGGGGAGCCTCTGGTGCCTGAGTTGGGGTCCGAGGCCCGGACGCGGGGGAGTCAACGCGGGGTTGGAGAAAGTCAAAGATCTGTTGAGGAAAGCGCCGGTTTTGGTTCCGGTGTATAGGAACTGTTACATTCCCTGCGAGCCCAATTTGGCGGGAAATCCAGTGTTTTATATAGATTCCGAGAGCGCGAGGGTCTTGAGTTTCGACGTCACGGGATTTTTCAGGGAGTTCGGAATGGCGCACGCGCCGGCGTGGGCGCCGAAGGAGGCGAGGATGGTGGAGTTTTGGAGCGACGTGGCGGCGCGTGGCGACACGTGCGGGTGGTGGAGCGGGAAGCTGGGTGGGGGTTGCTTGGATGAGGTGTGTTGGAGGCTGAGGGAGGGAGGGTGGAAGGAGGAGGAAGTGAGGGAGATGATGATGATGGATGGTTGTGGTGGAGAAATGGAAAGTGGGAACCAGGTGATTGGGTGGAGGAGGGAGGAGGATATGGGGTGGCGCGTGGGGTTGTTATCGTTGGTTTTGTTGCGTGGGGGTTGGACCAGGGAAGATGTGGTGTACTCGCTTGGTCTTCATGACCAGAACGAGGTTGTTGATGAGAACGTAACGTATTTGGAGTGTCAGCTTTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.85

Weight (kDa)

5.21

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 516
Acc36I ACCTGC 1 cut(s) 289
AccB1I GGYRCC 2 cut(s) 321, 562
AccBSI CCGCTC 1 cut(s) 636
AccII CGCG 8 cut(s) 131, 140, 351, 365, 494, 551, 610, 804
AciI CCGC 8 cut(s) 131, 235, 351, 365, 458, 605, 624, 636
AclI AACGTT 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 142
AcvI CACGTG 1 cut(s) 621
AcyI GRCGYC 2 cut(s) 513, 563
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 2 cut(s) 188, 863
AfiI CCNNNNNNNGG 6 cut(s) 284, 331, 344, 350, 351, 889
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 1 cut(s) 91
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 2 cut(s) 762, 845
AluBI AGCT 5 cut(s) 136, 162, 256, 643, 928
AluI AGCT 5 cut(s) 136, 162, 256, 643, 928
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 9 cut(s) 3, 118, 150, 202, 215, 246, 279, 286, 341
ApeKI GCWGC 1 cut(s) 59
AspLEI GCGC 7 cut(s) 403, 494, 547, 553, 565, 610, 804
AspS9I GGNCC 7 cut(s) 202, 215, 247, 280, 335, 342, 843
AsuC2I CCSGG 3 cut(s) 219, 278, 345
AsuHPI GGTGA 1 cut(s) 778
AvaII GGWCC 2 cut(s) 335, 843
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 321, 562
BanII GRGCYC 2 cut(s) 138, 450
BbrPI CACGTG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 2 cut(s) 122, 680
BbvI GCAGC 1 cut(s) 71
BccI CCATC 3 cut(s) 574, 721, 725
BciT130I CCWGG 2 cut(s) 764, 847
BcnI CCSGG 3 cut(s) 219, 278, 345
BcoDI GTCTC 1 cut(s) 307
BfoI RGCGCY 2 cut(s) 404, 566
BfuAI ACCTGC 1 cut(s) 289
BglII AGATCT 1 cut(s) 385
BisI GCNGC 2 cut(s) 60, 606
BlsI GCNGC 2 cut(s) 61, 607
Bme1390I CCNGG 5 cut(s) 219, 278, 345, 764, 847
Bme18I GGWCC 2 cut(s) 335, 843
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 7 cut(s) 202, 215, 247, 280, 335, 342, 843
BmiI GGNNCC 6 cut(s) 314, 323, 336, 414, 564, 761
BmrFI CCNGG 5 cut(s) 219, 278, 345, 764, 847
BmsI GCATC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 866
Bpu10I CCTNAGC 2 cut(s) 122, 680
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 3 cut(s) 219, 278, 345
BsaAI YACGTR 1 cut(s) 621
BsaHI GRCGYC 2 cut(s) 513, 563
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 5 cut(s) 243, 283, 306, 338, 846
BsaWI WCCGGW 3 cut(s) 183, 208, 415
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 157, 187, 677, 707
Bsc4I CCNNNNNNNGG 6 cut(s) 284, 331, 344, 350, 351, 889
Bse118I RCCGGY 2 cut(s) 403, 553
Bse1I ACTGG 2 cut(s) 236, 467
BseBI CCWGG 2 cut(s) 764, 847
BseDI CCNNGG 5 cut(s) 243, 283, 306, 338, 846
BseGI GGATG 4 cut(s) 239, 585, 667, 736
BseLI CCNNNNNNNGG 6 cut(s) 284, 331, 344, 350, 351, 889
BseMII CTCAG 4 cut(s) 32, 136, 317, 671
BseNI ACTGG 2 cut(s) 236, 467
BseRI GAGGAG 3 cut(s) 716, 793, 800
BseXI GCAGC 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 643
Bsh1236I CGCG 8 cut(s) 131, 140, 351, 365, 494, 551, 610, 804
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 9 cut(s) 5, 120, 152, 204, 217, 248, 281, 288, 343
BshNI GGYRCC 2 cut(s) 321, 562
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 8 cut(s) 184, 209, 218, 278, 345, 404, 416, 554
BslI CCNNNNNNNGG 6 cut(s) 284, 331, 344, 350, 351, 889
BsmAI GTCTC 1 cut(s) 307
BsnI GGCC 9 cut(s) 5, 120, 152, 204, 217, 248, 281, 288, 343
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 138, 450
Bsp143I GATC 2 cut(s) 108, 385
BspACI CCGC 8 cut(s) 131, 235, 351, 365, 458, 605, 624, 636
BspANI GGCC 9 cut(s) 5, 120, 152, 204, 217, 248, 281, 288, 343
BspCNI CTCAG 4 cut(s) 31, 135, 318, 672
BspFNI CGCG 8 cut(s) 131, 140, 351, 365, 494, 551, 610, 804
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 6 cut(s) 314, 323, 336, 414, 564, 761
BspMI ACCTGC 1 cut(s) 289
BspT107I GGYRCC 2 cut(s) 321, 562
BspTNI GGTCTC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 636
BsrFI RCCGGY 2 cut(s) 403, 553
BsrI ACTGG 2 cut(s) 236, 467
BssAI RCCGGY 2 cut(s) 403, 553
BssECI CCNNGG 5 cut(s) 243, 283, 306, 338, 846
BssMI GATC 2 cut(s) 108, 385
BssNI GRCGYC 2 cut(s) 513, 563
Bst2UI CCWGG 2 cut(s) 764, 847
Bst4CI ACNGT 1 cut(s) 431
BstACI GRCGYC 2 cut(s) 513, 563
BstBAI YACGTR 1 cut(s) 621
BstC8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
BstDEI CTNAG 4 cut(s) 18, 122, 326, 680
BstF5I GGATG 4 cut(s) 239, 585, 667, 736
BstFNI CGCG 8 cut(s) 131, 140, 351, 365, 494, 551, 610, 804
BstH2I RGCGCY 2 cut(s) 404, 566
BstHHI GCGC 7 cut(s) 403, 494, 547, 553, 565, 610, 804
BstKTI GATC 2 cut(s) 111, 388
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 2 cut(s) 108, 385
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 5 cut(s) 65, 137, 245, 321, 621
BstNI CCWGG 2 cut(s) 764, 847
BstSCI CCNGG 5 cut(s) 217, 276, 343, 762, 845
BstUI CGCG 8 cut(s) 131, 140, 351, 365, 494, 551, 610, 804
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 866
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 770
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 9 cut(s) 5, 120, 152, 204, 217, 248, 281, 288, 343
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 4 cut(s) 239, 585, 667, 736
BtsIMutI CAGTG 1 cut(s) 474
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
CciI TCATGA 1 cut(s) 877
CfoI GCGC 7 cut(s) 403, 494, 547, 553, 565, 610, 804
Cfr10I RCCGGY 2 cut(s) 403, 553
Cfr13I GGNCC 7 cut(s) 202, 215, 247, 280, 335, 342, 843
CseI GACGC 3 cut(s) 129, 137, 357
CsiI ACCWGGT 1 cut(s) 762
Csp6I GTAC 2 cut(s) 187, 862
CviAII CATG 2 cut(s) 40, 878
CviQI GTAC 2 cut(s) 187, 862
DdeI CTNAG 4 cut(s) 18, 122, 326, 680
DinI GGCGCC 1 cut(s) 564
DpnI GATC 2 cut(s) 110, 387
DpnII GATC 2 cut(s) 108, 385
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 120
Eco24I GRGCYC 2 cut(s) 138, 450
Eco31I GGTCTC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 335, 843
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 142
Eco72I CACGTG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 2 cut(s) 762, 845
EcoT38I GRGCYC 2 cut(s) 138, 450
EgeI GGCGCC 1 cut(s) 564
EheI GGCGCC 1 cut(s) 564
FaeI CATG 2 cut(s) 43, 881
FaiI YATR 6 cut(s) 41, 423, 477, 479, 794, 879
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 2 cut(s) 39, 877
FauI CCCGC 6 cut(s) 228, 344, 358, 451, 617, 629
Fnu4HI GCNGC 2 cut(s) 60, 606
FokI GGATG 4 cut(s) 226, 592, 674, 743
FriOI GRGCYC 2 cut(s) 138, 450
Fsp4HI GCNGC 2 cut(s) 60, 606
GlaI GCGC 7 cut(s) 402, 493, 546, 552, 564, 609, 803
GluI GCNGC 2 cut(s) 60, 606
GsaI CCCAGC 1 cut(s) 647
HaeII RGCGCY 2 cut(s) 404, 566
HaeIII GGCC 9 cut(s) 5, 120, 152, 204, 217, 248, 281, 288, 343
HapII CCGG 8 cut(s) 184, 209, 218, 278, 345, 404, 416, 554
HgaI GACGC 3 cut(s) 129, 137, 357
HhaI GCGC 7 cut(s) 403, 494, 547, 553, 565, 610, 804
Hin1I GRCGYC 2 cut(s) 513, 563
Hin1II CATG 2 cut(s) 43, 881
Hin6I GCGC 7 cut(s) 401, 492, 545, 551, 563, 608, 802
HinP1I GCGC 7 cut(s) 401, 492, 545, 551, 563, 608, 802
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 3 cut(s) 222, 357, 482
HpaII CCGG 8 cut(s) 184, 209, 218, 278, 345, 404, 416, 554
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 2 cut(s) 361, 862
Hpy188I TCNGA 5 cut(s) 108, 307, 339, 487, 539
Hpy188III TCNNGA 5 cut(s) 31, 112, 176, 502, 878
Hpy8I GTNNAC 2 cut(s) 361, 862
Hpy99I CGWCG 3 cut(s) 131, 515, 602
HpyAV CCTTC 4 cut(s) 166, 215, 562, 691
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 6 cut(s) 261, 513, 600, 620, 906, 911
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 137, 245, 321, 621
HpyF3I CTNAG 4 cut(s) 18, 122, 326, 680
HpySE526I ACGT 6 cut(s) 261, 513, 600, 620, 906, 911
Hsp92I GRCGYC 2 cut(s) 513, 563
Hsp92II CATG 2 cut(s) 43, 881
HspAI GCGC 7 cut(s) 401, 492, 545, 551, 563, 608, 802
KasI GGCGCC 1 cut(s) 562
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
Kzo9I GATC 2 cut(s) 108, 385
LmnI GCTCC 4 cut(s) 133, 312, 594, 633
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 248
MabI ACCWGGT 1 cut(s) 762
MaeII ACGT 6 cut(s) 261, 513, 600, 620, 906, 911
MaeIII GTNAC 3 cut(s) 431, 514, 907
MalI GATC 2 cut(s) 110, 387
MbiI CCGCTC 1 cut(s) 636
MboI GATC 2 cut(s) 108, 385
MboII GAAGA 2 cut(s) 863, 866
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 138, 450
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 451, 934
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 563
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 3 cut(s) 351, 653, 821
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 553
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 8 cut(s) 184, 209, 218, 278, 345, 404, 416, 554
MspR9I CCNGG 5 cut(s) 219, 278, 345, 764, 847
MvaI CCWGG 2 cut(s) 764, 847
MvnI CGCG 8 cut(s) 131, 140, 351, 365, 494, 551, 610, 804
MwoI GCNNNNNNNGC 5 cut(s) 65, 137, 245, 321, 621
NaeI GCCGGC 1 cut(s) 555
NarI GGCGCC 1 cut(s) 563
NciI CCSGG 3 cut(s) 219, 278, 345
NdeII GATC 2 cut(s) 108, 385
NgoMIV GCCGGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 43, 881
NlaIV GGNNCC 6 cut(s) 314, 323, 336, 414, 564, 761
NmeAIII GCCGAG 2 cut(s) 224, 264
NmuCI GTSAC 1 cut(s) 514
PagI TCATGA 1 cut(s) 877
PceI AGGCCT 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PdiI GCCGGC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 222, 482
PkrI GCNGC 2 cut(s) 61, 607
Ple19I CGATCG 1 cut(s) 111
PleI GAGTC 1 cut(s) 365
PluTI GGCGCC 1 cut(s) 566
PmaCI CACGTG 1 cut(s) 621
PmlI CACGTG 1 cut(s) 621
PpsI GAGTC 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 138
Psp1406I AACGTT 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 762, 845
PspCI CACGTG 1 cut(s) 621
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 2 cut(s) 762, 845
PspN4I GGNNCC 6 cut(s) 314, 323, 336, 414, 564, 761
PspPI GGNCC 7 cut(s) 202, 215, 247, 280, 335, 342, 843
PsuI RGATCY 1 cut(s) 385
PvuI CGATCG 1 cut(s) 111
RsaI GTAC 2 cut(s) 188, 863
RsaNI GTAC 2 cut(s) 187, 862
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 60, 606
Sau3AI GATC 2 cut(s) 108, 385
Sau96I GGNCC 7 cut(s) 202, 215, 247, 280, 335, 342, 843
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 5 cut(s) 219, 278, 345, 764, 847
SduI GDGCHC 2 cut(s) 138, 450
SexAI ACCWGGT 1 cut(s) 762
SfaNI GCATC 1 cut(s) 248
SfoI GGCGCC 1 cut(s) 564
SgrAI CRCCGGYG 1 cut(s) 553
SinI GGWCC 2 cut(s) 335, 843
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
Sse9I AATT 2 cut(s) 451, 934
SseBI AGGCCT 1 cut(s) 120
SsiI CCGC 8 cut(s) 131, 235, 351, 365, 458, 605, 624, 636
SspDI GGCGCC 1 cut(s) 562
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 5 cut(s) 217, 276, 343, 762, 845
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 6 cut(s) 264, 516, 603, 623, 909, 914
TaqI TCGA 3 cut(s) 23, 111, 510
TasI AATT 2 cut(s) 451, 934
TatI WGTACW 1 cut(s) 861
TauI GCSGC 1 cut(s) 608
TfiI GAWTC 2 cut(s) 222, 482
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 866
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 2 cut(s) 335, 843
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
ZraI GACGTC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.