Rorug02G0160300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017091
Physical Location & Seq
Reverse (-)
14274252 .. 14294464
20213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0160300.1

Sequence Viewer

Length: 9708 bp
ATGTTTCCGAGCGGCACAATCCGGCGGAGGCTGGCCGCTCTGTTGCGGCCGTGGCTTCGGGAAGAGCCGGAACTCGAGCTCAGTTTGGGGCTGATCAGTTCGCACGCGGTGGCTAAGAACCTCCGGTTCGATACCGCGGCGCTCAATCGGCCCGGCGACGATTCGGACGGGTTTTCGTATAAGGAGGTCAGTGTCGAACAGCTGAGCGTTCGGTTCTCGAACTGGCTCGCTCCTGCATTCTCAATTGAGTTTCATGGCGTCAAGGTGGTGCTCTCGACTCGGGAGTTGAAGAAGAAGAAGAAGAAGCTTTCTGAGGATACATTTGCAGAGGATATGAAGAAGAAGAAGCTTTCTGAGATTGATCCTCAGGGGAGTGCTGTGCATGCTTTTCTGGAAAAGCTTATGGCTACTTCTACGACTCCGAAAAATAAGTTCAAAACATCTCTTTTGAATCTGTTACTCACACACTGTCAGCTTCAACTGCATGAAATTAGTGTCCAAGTCCAGGTTCCGATCTTAAATGATTTGTTTTTCTGTTCACTGGATATAGAAGATATAAATGTAGATCCTCAGTATATTGATCGTGGGTGTCTTCTTCGAGGCCTTTTTGGTACACTCTTTGTACCTTCGAAGGAGAGCTCTTTTGCTATAGTAGGCAGTGGCTGTGAGGTTGGGTTTAAGAGGGCAGGTCAACTCAAACGTGTCTTGTTATTGACTGAGTTGTGCAGTTGCATTAAGTTGAATGATTTTCAGCTTGTAGACATCAATCTTCGAGTCCCTGAAATACATTTTTCGTTTTCTCCGGATGATGTTTCTTTCTATTTGGCATTCACTAAAGCATCATCCCAAGAATCTCATCGTGCTAGAGATGGCAGACAACTGTGGAAGCTAGCTGCGAGTAGAATTGACAATATGACTTCAGCTCATAGATGGTCGTTGCAAAAGTCAGCTGTTGTTGTTTGTTTCTGGTTACGTTATGTCAATGCTTACGAGTATTTACTGTTGCTAATTGGATATTATGACGACCACTTATTAAAAAGATCAGCTATTAGAATCTATGAGGACAAGATGCTTTTGAGTTCTGTTGAAAACCAATGGAAGGTGATTTCTGATATTGAGAAAGAGCTGCCAGCTGAAGCTATTGCACAGGCATGGAGAGTAGCCCGTAACAGAGCAGCATCAAATGTTCAATGTCCCGAATATAGTTCCAAAAAACCATTTGTGACTACAGTTTACAACTTCCTTCTCATAATCCTTTCATTACTAGCTTGTGCCTGGAGATATTTTTGCAAGATAGTCCTTTTTATTATGCACCCCTTTGTTTTTAGGAAAATATTAGTCAATGAGCCAAAGAGTGCAGATCTGGATATTGTTTCTGAAGGTCCGTGTACACAGTTTTGCTTCAGTTTGATGCTTGGAAAAGTTCAAATCACTATTTCTCATAGAAATGAAATTCAACTCTTAGTAAATGAAAAGTTGAAATCACATCTTGGGATCACTTACTCGGATTCACTTTCATTTCGTCTTTCAGTTGATGCACTGTTACTAAAATATGTAGACGACATGTGTGAAGAGTCTTTACTGATATCCTGTGGGCAATTAAAGGTCAGATCCTCATCTCTTATGGAAGCTCCTGTTAAAGAAAGCAGTTCAAAATTATCCTTTAGTTCCATGGAAGCACATTGGAAGGAGAGCAATGATAAGTGGAACAATATTCTGTGGGGTGAGCCAGCAGAAATATTTCCACTTTTAGAAACTTCTGAAACTGGTTGTGCTGATCATGTGGAAGGTTCTTGTGTCTCATTTCTGAAAGACATGTGGTTGGATTGGAGAAGTGAGTGCGATAAATTTGGAAAAAGTGAAATTCAGTACTCTGAAACTCCATTCCTTCTTTGTGAATTAAAAAACTTTTTGATATATCCAGACCTCAAAACATCTGATTCTGGTTTTTGGAAGTTCTATTTTGTTCTGGGAAAGTTGAATCTTGTGTTGGGATATTCATCAATAGTATCATTGTCTCTGCTATTTAGGCAGATACAACATACTCTATGCTGGGGAGAGGCCAATGGTCAGTCACCCGGTCTTTCACATTCTCCAAGAACCAGTGAGAGTAAACCAGAAATCAGTCTGGATAGCAAATACAAGTGCTATGCTAATAGATTAGAAATGGCATTGCTTAAAATGCTTCCAAAAAAACATGTTCAACTAGGGGTATTCATTGCTGGTCCTCACATCCTTATGTCATTGGGAAAGAATTTTGATGGTGGCAAAAAAGACAAAAATCATGTACATATTCAGGACGATTTTCACCTTGCATTTGATGTGCACAATATTGAAGCTGCTGTTTGGCCAACCTCAAAGTTTGATCTTGCATCATTCGTGGGGCCCTCAGCATCTGATGATGTGGAACCAGAGTGCCTCAGGATGGACCAGCCTCTGGTGATTGATATCTCTAACTCTAATAATGGGAAGTATCAAGCTCAGGGTGGGATCTCTCTTGGTTCCTACATACGAGTTGATGGTTTAGATGTCTGCCTGGTCGCCGCAGCAGGAAAACGACAAAGCCAGATTTTGGTTTCTAAGCCAATGACTTTGCAGTTGTTATCCTCCAGGGAGTATGTTCATTCATTTAGCACAAATGTTATTGCTTTCTCTGCAGCTTTGTTTGGGAAAACTGAAGGATTCACTATTTTATCGTACATGGATGAATTTGTTGTTCTCTTTCAGGTGCTTGCAAATTTATCTTCTGCAGTATCATATTCATTTAGACATTTTGCATCTGTCAGTGACTTGCCTTTACAATTTGGAAAGCAACAATATTCAAATGCTGAATCTGAGAACGAGGAGACCACAGCGCATGAACCTCCCTTGAATTATAGCAGTGTCCTATTTTCAACTAATGGGACCTTCAAAATCAAGTCGATGAATATAATCGTGCACAAGTCTAGGATGCGTGATAATGTGGGGAGCTGCCTAGTAACCTCTGATGCTTCAAGTAGCAAACAGTTGTCTGAGCATGACTTGCCTGATTATGGAATTTGGATTTCAGTTCATCAAACAAGTCTTGATATGTCTTGCAAAGAAGGAAAAGTGATACTTCTTTCTAATTTATCAGAAATTCAGTCTTCAAGTTTTAGATATAAGAATCGGAGAGGCAAAAGTACTGATCAGTCTGTACTTAGTGATCTGCTACTGCAATCTCTTGATTGCATATATCAACTATCACTTTCTAGTTGTGTACTTAGTTTGTCACTGTTCCTATCTCAGAACTGCTCATCTATTGGCACTGTTAGCAACACACTCGATACTAATTCTGTGAGTGAAACAGAGCACACGGAAAATTTCCCATTCACTAATTCTGAAAGCTCAGGTCATCAGAACTATAGCTTTATTCAAGGGTCAGAATTGGCTTCAAATATTCGACCACCGGGCTCAAGCCATTGGTTACTTGTAAATCTTGCACTGGGTAAGATTTATGTGGGAAGGTGCTCAGCAAAGAATGTTATGAATGAGGCGCATCAATTAAATAAGTTTTTGTCATCAGTTTCTGTTGGTGGTGAATTTCAGAGAATCAGTTGTGAAATTCAGGGTGGTTTCCTTTTCCTTGAAACAACAGCTTCGGCTACCTTATTGCGATGTTTTTCTTCATATCTTGATTGCTCCACAAATATTTTATCTGGCTCACAATCATCCGATAAGCACGTTGAAGAAGATAAGCCCATTGAAGAAGCTGATACTGCTGAAAATATGACTAGACCAGATAGTCATTCTGATAAGGACTGTATGCAAGAGATTCCTTGTACATCTCCACAGGTCAAAGGGGGACAGATGGAAGCTTTTAGCTTAAATATATCTCGTTTTTCTTGCGCTCTTGTGATTCAGGAAGAGAATGGTGCTGTACAGGAGCTCGTGCTTGAGATTGATGCCCATTTGAACGTTGAGTTGAAAAACATGCGAAGAAAATTTATATTTAAGCTTTCTCGCATATCAATCCTTTCTCAGGTCCTTCAAGAAATTTTGGAAAATCAAACCCAAAGTTCTCAAGTTTCTTCAGTCACATCGAATATTTTTCAATCTCATGCTGCATCAGGAGCGTCTACAGGTTCTCAGCACATGGATGAGATTCATCCTGTTAATAATGCAAGTAGTTCAAGAGGTCCTGGATCACAGGAAGAGCGCTCTGAACATAGTTCTCTGCATGAGGTATTTCGTCTAAGTCATCACAAATATATCCTAAAGGGTCAAGAACTAGCCTCCAGTGAGTGCGAGTCAAGACAGGAAGGGGGAACTGCCTTCATATCAGTTGAGAAGCCTTTAAATGAAGTTTGGGTTGGAAGCGGAACTATTTCATGTTTCGATATTACAATATCTCTATCTCAAATACAGATGCTTCTGTCTATGATTTCATCCTTTTCTGGAGTATTTGGGGAGGAGGTGATCCGTGAACCGGATAGAAGGCACTGGTCGAGTGACGAGGAATTAAAAAACAGTTTGGAAACAATGGTTCCTAATGGTGCAATAGTGGCAATTCAGGATGTCCATCAACATATGTATTTTACAGTTGAGGGTAATGAGGATAAGTACAGCTTAGCGGGTGCAGTTCATTATTCTCTTGTGGGAGAAAGCGCTCTTTTCATGGTCAAGTATAACAATCAAAAGGGATGGAATTCGTCAGTTTTGTGGTTCTCCTTGATATCATTGCATGCCAAGAATGCTTCTGGGGAGCCATTGCGCTTGAACTACCTTCGAGGATCTGATTTTGTTGACGTCTCTAGTGCGAATGATAATGCAGGGTCACTTTGGACAGCGGTTTCTTGTGAACCTGAAAGTTATGAGGGCGACATTGACTGGGAGCCCTACAATCAATTGATTAAAAGGACCTTTTACCTTGTGAACAAAAAGAATGACTCTGCTGTTGCTATTGTAGATGGGATTCCAGAGTTTGTTAGAAAGCCTGGAAATCCAATCAAGTTGAAAGTGTTCCATAATGCTCCTATAGCTCATGACATAAAGATGGATAACTACCCTGGAGAGGCATCTGTGGCTCGTCCGCAACAGAGTGATGAAGGGATAACTTCTGGGAAGGGTGGAAAGCTTCCTTGCATTGATGTTACATTTGACACAATTTCCTTGACCATTATCCATGAACTCGTAGATACAAAAGACATGCCTCTCCTTCGTTGTTGCATTGGTGGAACTGGACAGTCCAAATATGAACTTGAAGAGTCAAAAGACATGGCTCTCCTTGGTGGTTGCAGCGACAGAACCAAACGATCCAAACTTACTGTTCAAATTCTCCCTTCTAAAGTTAGGATTATAAGCTCCTTAACAACAGTGGTATATTACTTTGATGCACAAAGAAACAAATGGAGAGAACTTATCCACCCAGTTGAAACATGCCTTTTCTATCGTTCAAGCTTCCAAATTCAGAGCTCAGAAGCTGTTTCGCATGGAGTACCTGTTCATATCCATTGCAGAACTAAAGAGTTGAATATATCCCTATCCGAGCTTTCATTGGACATACTTCTCTTTACAGTTGGGAAACTAAATTTAGCTGGTCCTTTCTCAGTGAGAAGTACTAAGATTTGGGCCAATTGTTGCAAGGTGGAGAACCAGTCAGGATTAAACCTTCTTTGTCAGTGTGATGAGCAAAGTGTAAAAGTTTCCAGAAGGCAGTCTACGTCCATTATTTTAAGGTGCTCGGATTTGGAAAACCAACCTCCAGAGATGGCATCAGTCATGTCAATCCGACTAACCGGTCCTAGATCTTCTTTGATGACCTCTCCAATTCATGTCTCTCACCTAGAAGCTCAAGCATTTGCTTGGAGAACACAAATAATGTCAGTTAAAGATTCACAAACTTACCCTGGACCATTTGTTATAGTTGACGTTTCAAGGAAATCCCAGGATGGTTTGTCAATTCTTATTTCTCCTCTCGTAAGAATACACAATGAAACTGGATTGTCTATAAAGCTACGATTTCGACGATCTCAGCAGAAGGAAGACGTGTTTGCTTCAGTGGTGCTTAATGCTGGTGATACATATGATGACTCCATGGCCATGTTTGATGCTATAAATTTGTCTGGTGAAGAAAAGAAGGCCCTGAGGTCTTTAAGTCTTGGCAATTTCTTGTTCTCTTTTAGACCTGAAATTCCAGATGGCTTAATGAACTCTAAGAAATCAATTTCAGCAGAATGGTCAGATGATCTTAAAGGTGGAAAGGCAGTTCGTCTCTCTGGAATCTTTGATAAATTAAGCTATAAAGTGCGGAAGGTTTTGTTTAGTGAATCTGCGAAATCTTCCTTCAGCACTGCCCATTGTACTCTTAAATCGGAGGGGGCAAATACTGTCGACATGCATTTTTTGATTCAGAGTATAAGGAGAAATGTTCCTATTGTACAACCTGATAGGTCTATGAATCTCCTTGAAAATAGCAAATCACCAGTTGCCTTACAAGAGCAAAAGGATATTTATCTTCTTCCTACAGTGTGTGTTTCCAATTTATTGCATACGGAGATACATGTCTTTGTAAGTGAATCAGATGGACGTCCTACTATTGCGTCTGACAATGATAGGAATCAATCAACCATATCTTGTGGTTCCATGGTTGAATTTTATGCCAACCCTTCGATTATTTACTTCACAATCACACTGACTGGTTATGATGCAAGCTGCAAACCAGTGAACAGCAGTGATTGGGTCAAAAAGTTACTGAAGCAGAAAAGTGATGTGCCTTCTGTGGACATTGATCTGGATTTTGGTGGGGGAAAGTATTCTGCTACCTTAAGATTGTCTCGAGGGAGCAGAGGCACATTAGAGGCTGCTATTTTCACATCATACGCCCTGAAAAATGATACAGAATTTGGCCTTTGTTTCTTTGTGTCTAATAAGAGGCCCCTTTCTAGGGATGAAGCAGAGAAGTATGGTTCTAGCATTCCTTCAGAATTTGGATTATATTTGCCTCCAAAGTCAACCCGATCATGGTTCTTAAAATCCAGCAAAGTGCGTCTCAAATTGCTAAAAGATAATGCATCGGAGACACTTATCGACTTGGATGCTTTATCAGGACTTGCGGAGATAAGTTTGGAAACAGAGGAAGGATCTGGAATCAGATCTATTACAAAGCTTGGGGTTTCCACAGGACCACCTTTGAGTAAAGTGGTTGTGCCATCACAAATAGTAACTATGGTCCCAAGACATGTTGTAATAAATGAATCAGGAGAAAACATCATTGTTCGCCAATGTTATTTGCAGGATGACACTGCTGGCATGATCCCCGTGTACAGTAAACAGAGGGCGCCTCTACAGCTGTGGAATGTGATAGACAAGAAGAGAGATGTCAGTTTGTTTGAGCGTGTTATGAAAAAGCACAGAAAAGCTAATGATGATTCACCAATATATCTCCAGTTTCGATTGAATGAGTCTAAGTTAGGTTGGTCGGGACCAGTATGCATTGCTTCTCTAGGAAGATTTTTCCTCAAGTTCAAAAGGCAGCAATTGGACCAAGTGCCAGCACTAGAAAGCAATGTAACAGAATTCGCTTCTGTTCATCTTGTTGAAGAAGGCTCTACTCTTGGTTTACACTTCCATAAACCTCCAAATGTCAGTCTCCCATACCGAATTGAGAATTGCTTGCCTGATGTGTCGATAACTTACTACCAGAAGGATTCATCAGAGCCAGAGATTATTGGATCGGAAAGTTGCACTGATTATGTTTGGGATGATTTGACTCTTCCACATAAGTTGGTCGTCAGGATCAATGATAGTCTTCTACTACGTGAAATTAACTTGGATAAGGTGAGAGCATGGAAGCCTTTCTACAAAACCAGGCAACGGAGTGGATTGGCAACTCATTTACCATTTGGAAAAGACTCAGGGGACAAGAAGGGTGATTTTGGTGAGTTTAATGGCATGGAGATGATGAAGGTGGGGTTTGAAGTATATGCAGATGGTCCAACCCGGGTCTTAAGATTTTGTGAAATTTCTAGCAGCCACAAGGGAAATAAAATGTTTCAATCATGCGAGAAGATTCAACTAAGACTTAATCAGTTTACAATTCACCTTCTTGAACATGAAAAGCAGGATGGAGAAGATATGGAGCCGCCTGGGTATACACCAATCTTAGCTGCAAGAATTGGAAGTATTAACTTTGATTCTGTCTTTACATATGAGCAAAAGTTTAGCCAGATCAGTGTACAGTCATTGAATTTGGAGAACAAGTGGGTGGGTGCTCCTTTTGCAGCAATGCTTCGTAGACATCAATCAGACTTCAATGATTCAAATGATTGTGTACTCAAAATTGTCATTGTCTTGCTGTCAACCAGTTCCAATGTTGTACAAGTTAAGTACTCGTCTATTGCTCTGCAGCCAATGGATTTAAATCTTGATGAGGAGACATTAGTGAAAATTGTCCCATTTTGGAGAACATCTCTTAGTGAGGCGAAGAGTAGCCAGTATTATTTTGATCATTTTGAGATCCATCCAATAAAGATTATTGCAAACTTTCTTCCTGGCGAGTCATATTCAAGTTATAGCTCAACTGAGGAGACTCTAAGGTCCTTGCTGCACAGTGTAGTTAAGGTCCCTGCGATAAAAAATAAGGTTGTAGAGCTCAATGGTGTTATGGTCACTCATGCTCTTATAACGATGCGTGAATTACTTATCAAATGTGCACAACATTATTCATGGTATGCCATGAGGGCTATTTATATTGCAAAGGGAAGTCCATTGCTTCCACCAGATTTTGTGTCAATTTTTGATGACTTGGCTTCTTCGTCTCTTGATGTCTTCTTTGATCCTTCTCGTGCATTAGTGACTCTTCCAGGTTTGACTTTAGGTACCTTCAAATTAATCAGTAAATGTATCGATGGTAAAGGATTCTTGGGGACAAAACGCTATTTTGGTGACCTAGGAAAATCTTTGAGGACGGCAGGGTCAAATGTATTGTTTGCTGCAGTCACTGAAATATCAGACTCTATTCTGAAAGGAGCAGAAGCAAGTGGTTTTGATGGAGTGGTCACGGGCTTTCACCATGGAATATTGAAATTGGCTATGGAGCCATCATTATTGGGAACTGCTTTGATGGAAGGTGGCCCAGATAGAAAGATTAAGCTTGACCGCAGTCCTGCTGTTGATGAGTTATATATCGAAGGATACTTGCAAGCAATGTTGGATACGATGTATAGACAAGAATATTTGAGAGTCAGAGTCATCGAGAATCAGGTTTACCTCAAAAACCTGCCCCCAAACAGTTCCCTTATAAACGAGATTATGGATCGTGTGAAGGGGTTTCTTGTGAGCAAGTCACTTCTGAAAGGAGACCCCTCAATAACATCTCGCCCCTTGGGTCATCTTCGAGGTGAACGTGAGTGGAGAATCGGCCCAACTGTGCTGACATTAGGTGAGCATCTGTTCGTGAGTTTCGCAATCCGAATCCTGCGGAAGCAAGCTAACAAGTGCATCACCAACATCAAGTGGAAGCCAGAGAGCGATGGTGGTCGATCGATTGTCGCTGCAAGCTCCTCGGAAGAAGTGGTGAAGGGTAAGTTCATTTGGAAATGGGGAAGTGGGATCGGCAAGTTTGTTTTGTCAGCCATAGTAGCATATATAGATGGACGGTTATGTCGTTCTATTCCTAATCCTGTAGCTCGCCGCATTGTTAGTGGCTTTCTGTTGACTTTCCTTGATAACAACAATAGCAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

3235

Amino Acids

361.51

Weight (kDa)

6.54

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_VAB PF25036 2155 - 2574 8.4e-20 Vacuolar-sorting associated protein 13, adaptor binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 5318, 8642, 9260
AasI GACNNNNNNGTC 5 cut(s) 3762, 5757, 8554, 8932, 9621
AatII GACGTC 2 cut(s) 4770, 6550
Acc36I ACCTGC 2 cut(s) 677, 9246
Acc65I GGTACC 1 cut(s) 8837
AccB1I GGYRCC 2 cut(s) 7297, 8837
AccB7I CCANNNNNTGG 2 cut(s) 2437, 2572
AccBSI CCGCTC 2 cut(s) 12, 38
AccI GTMKAC 7 cut(s) 759, 1557, 4097, 5678, 6351, 8111, 8254
AccII CGCG 2 cut(s) 107, 137
AccIII TCCGGA 1 cut(s) 802
AclI AACGTT 1 cut(s) 3936
AcoI YGGCCR 4 cut(s) 33, 47, 2348, 6057
AcyI GRCGYC 4 cut(s) 258, 4767, 6547, 7298
AdeI CACNNNGTG 1 cut(s) 109
AfeI AGCGCT 2 cut(s) 4178, 4627
AflII CTTAAG 2 cut(s) 6784, 7966
AflIII ACRYGT 7 cut(s) 700, 1563, 1815, 2197, 6006, 6520, 7198
AgeI ACCGGT 1 cut(s) 5756
AjiI CACGTC 1 cut(s) 6007
AjuI GAANNNNNNNTTGG 6 cut(s) 492, 524, 1973, 2005, 4314, 4346
AloI GAACNNNNNNTCC 4 cut(s) 5445, 5477, 6210, 6242
Alw44I GTGCAC 3 cut(s) 2324, 2936, 8670
AlwNI CAGNNNCTG 6 cut(s) 663, 2396, 2437, 3548, 5441, 8960
Ama87I CYCGRG 4 cut(s) 74, 279, 6795, 7959
Aor13HI TCCGGA 1 cut(s) 802
Aor51HI AGCGCT 2 cut(s) 4178, 4627
ApaI GGGCCC 1 cut(s) 2388
ApaLI GTGCAC 3 cut(s) 2324, 2936, 8670
AseI ATTAAT 1 cut(s) 8849
AsiGI ACCGGT 1 cut(s) 5756
Asp700I GAANNNNTTC 5 cut(s) 1740, 4345, 4979, 6772, 7814
Asp718I GGTACC 1 cut(s) 8837
AspA2I CCTAGG 1 cut(s) 8908
AspLEI GCGC 8 cut(s) 142, 2857, 3517, 3869, 4179, 4628, 4734, 7300
AsuC2I CCSGG 5 cut(s) 153, 2079, 3429, 7960, 7961
AsuII TTCGAA 1 cut(s) 629
AsuNHI GCTAGC 1 cut(s) 889
AvaI CYCGRG 4 cut(s) 74, 279, 6795, 7959
AvrII CCTAGG 1 cut(s) 8908
AxyI CCTNAGG 3 cut(s) 366, 2420, 6104
BaeGI GKGCMC 4 cut(s) 2328, 2388, 2940, 8674
BalI TGGCCA 2 cut(s) 2350, 6059
BanI GGYRCC 2 cut(s) 7297, 8837
BanII GRGCYC 8 cut(s) 81, 641, 2388, 3434, 3909, 4857, 5435, 8613
BarI GAAGNNNNNNTAC 6 cut(s) 1563, 1595, 5662, 5694, 7802, 7834
BauI CACGAG 2 cut(s) 3908, 8802
BbsI GAAGAC 5 cut(s) 584, 3117, 6009, 7760, 8779
BbvCI CCTCAGC 1 cut(s) 2389
BceAI ACGGC 2 cut(s) 34, 8943
BcgI CGANNNNNNTGC 6 cut(s) 3283, 3317, 7037, 7071, 9504, 9538
BciVI GTATCC 3 cut(s) 310, 9146, 9166
BclI TGATCA 4 cut(s) 93, 1777, 3166, 8464
BcnI CCSGG 5 cut(s) 153, 2079, 3429, 7960, 7961
BfoI RGCGCY 4 cut(s) 143, 4180, 4629, 7301
BfrI CTTAAG 2 cut(s) 6784, 7966
BfuAI ACCTGC 2 cut(s) 677, 9246
BfuI GTATCC 3 cut(s) 310, 9146, 9166
BglI GCCNNNNNGGC 1 cut(s) 8699
BglII AGATCT 3 cut(s) 1360, 5765, 7112
BlnI CCTAGG 1 cut(s) 8908
BlpI GCTNAGC 3 cut(s) 203, 3490, 4588
BmcAI AGTACT 4 cut(s) 1871, 3163, 5578, 8348
BmeT110I CYCGRG 4 cut(s) 74, 279, 6795, 7959
BmgBI CACGTC 1 cut(s) 6007
BmrI ACTGGG 3 cut(s) 3473, 4858, 5381
BmtI GCTAGC 1 cut(s) 893
BmuI ACTGGG 3 cut(s) 3473, 4858, 5381
BoxI GACNNNNGTC 1 cut(s) 9120
BpiI GAAGAC 5 cut(s) 584, 3117, 6009, 7760, 8779
BplI GAGNNNNNCTC 4 cut(s) 7285, 7317, 8413, 8445
BpmI CTGGAG 7 cut(s) 1297, 2593, 4240, 4437, 5049, 5706, 7388
Bpu10I CCTNAGC 3 cut(s) 2389, 2481, 3367
Bpu1102I GCTNAGC 3 cut(s) 203, 3490, 4588
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 5 cut(s) 3418, 3935, 4026, 5796, 7463
BpuMI CCSGG 5 cut(s) 153, 2079, 3429, 7960, 7961
Bsa29I ATCGAT 2 cut(s) 8865, 9503
BsaAI YACGTR 1 cut(s) 7778
BsaBI GATNNNNATC 7 cut(s) 1615, 1999, 2447, 4539, 6471, 6576, 8379
BsaHI GRCGYC 4 cut(s) 258, 4767, 6547, 7298
BsaI GGTCTC 2 cut(s) 2840, 9312
BsaWI WCCGGW 4 cut(s) 123, 802, 4447, 5756
BsaXI ACNNNNNCTCC 6 cut(s) 5445, 5475, 5600, 5630, 8204, 8234
Bse118I RCCGGY 1 cut(s) 5756
Bse21I CCTNAGG 3 cut(s) 366, 2420, 6104
Bse8I GATNNNNATC 7 cut(s) 1615, 1999, 2447, 4539, 6471, 6576, 8379
BseAI TCCGGA 1 cut(s) 802
BseCI ATCGAT 2 cut(s) 8865, 9503
BseJI GATNNNNATC 7 cut(s) 1615, 1999, 2447, 4539, 6471, 6576, 8379
BseRI GAGGAG 6 cut(s) 2858, 4445, 5922, 8405, 8558, 9511
BseSI GKGCMC 4 cut(s) 2328, 2388, 2940, 8674
BseX3I CGGCCG 1 cut(s) 47
BseYI CCCAGC 1 cut(s) 2052
BsgI GTGCAG 4 cut(s) 745, 1377, 4617, 8549
Bsh1236I CGCG 2 cut(s) 107, 137
Bsh1285I CGRYCG 2 cut(s) 50, 9503
BshNI GGYRCC 2 cut(s) 7297, 8837
BshTI ACCGGT 1 cut(s) 5756
BshVI ATCGAT 2 cut(s) 8865, 9503
BsiEI CGRYCG 2 cut(s) 50, 9503
BsiHKCI CYCGRG 4 cut(s) 74, 279, 6795, 7959
BsmBI CGTCTC 4 cut(s) 4774, 6236, 7013, 8781
BsmI GAATGC 4 cut(s) 236, 827, 4717, 6933
Bso31I GGTCTC 2 cut(s) 2840, 9312
BsoBI CYCGRG 4 cut(s) 74, 279, 6795, 7959
Bsp119I TTCGAA 1 cut(s) 629
Bsp120I GGGCCC 1 cut(s) 2384
Bsp13I TCCGGA 1 cut(s) 802
Bsp1407I TGTACA 8 cut(s) 1388, 2287, 3800, 3898, 6397, 7281, 8194, 8335
Bsp1720I GCTNAGC 3 cut(s) 203, 3490, 4588
Bsp19I CCATGG 4 cut(s) 1671, 6054, 6603, 9031
BspDI ATCGAT 2 cut(s) 8865, 9503
BspEI TCCGGA 1 cut(s) 802
BspFNI CGCG 2 cut(s) 107, 137
BspHI TCATGA 1 cut(s) 5002
BspMAI CTGCAG 4 cut(s) 2659, 2752, 8367, 8956
BspMI ACCTGC 2 cut(s) 677, 9246
BspOI GCTAGC 1 cut(s) 893
BspQI GCTCTTC 2 cut(s) 57, 4167
BspT104I TTCGAA 1 cut(s) 629
BspT107I GGYRCC 2 cut(s) 7297, 8837
BspTI CTTAAG 2 cut(s) 6784, 7966
BspTNI GGTCTC 2 cut(s) 2840, 9312
BsrBI CCGCTC 2 cut(s) 12, 38
BsrFI RCCGGY 1 cut(s) 5756
BsrGI TGTACA 8 cut(s) 1388, 2287, 3800, 3898, 6397, 7281, 8194, 8335
BssAI RCCGGY 1 cut(s) 5756
BssNAI GTATAC 1 cut(s) 8112
BssNI GRCGYC 4 cut(s) 258, 4767, 6547, 7298
BssSI CACGAG 2 cut(s) 3908, 8802
BssT1I CCWWGG 7 cut(s) 1671, 5245, 6054, 6603, 8908, 9031, 9342
Bst1107I GTATAC 1 cut(s) 8112
Bst2BI CACGAG 2 cut(s) 3908, 8802
Bst6I CTCTTC 9 cut(s) 57, 1566, 3879, 4167, 5217, 7325, 7737, 8438, 8823
BstACI GRCGYC 4 cut(s) 258, 4767, 6547, 7298
BstAFI CTTAAG 2 cut(s) 6784, 7966
BstAPI GCANNNNNTGC 1 cut(s) 3022
BstAUI TGTACA 8 cut(s) 1388, 2287, 3800, 3898, 6397, 7281, 8194, 8335
BstBAI YACGTR 1 cut(s) 7778
BstBI TTCGAA 1 cut(s) 629
BstDSI CCRYGG 6 cut(s) 50, 135, 1671, 6054, 6603, 9031
BstEII GGTNACC 1 cut(s) 8903
BstENI CCTNNNNNAGG 1 cut(s) 3998
BstFNI CGCG 2 cut(s) 107, 137
BstH2I RGCGCY 4 cut(s) 143, 4180, 4629, 7301
BstHHI GCGC 8 cut(s) 142, 2857, 3517, 3869, 4179, 4628, 4734, 7300
BstMCI CGRYCG 2 cut(s) 50, 9503
BstPAI GACNNNNGTC 1 cut(s) 9120
BstPI GGTNACC 1 cut(s) 8903
BstSLI GKGCMC 4 cut(s) 2328, 2388, 2940, 8674
BstUI CGCG 2 cut(s) 107, 137
BstV2I GAAGAC 5 cut(s) 584, 3117, 6009, 7760, 8779
BstX2I RGATCY 9 cut(s) 565, 1360, 1610, 2490, 4751, 5765, 7100, 7112, 8475
BstYI RGATCY 9 cut(s) 565, 1360, 1610, 2490, 4751, 5765, 7100, 7112, 8475
BstZ17I GTATAC 1 cut(s) 8112
BstZI CGGCCG 1 cut(s) 47
Bsu15I ATCGAT 2 cut(s) 8865, 9503
Bsu36I CCTNAGG 3 cut(s) 366, 2420, 6104
BsuI GTATCC 3 cut(s) 310, 9146, 9166
BsuTUI ATCGAT 2 cut(s) 8865, 9503
BtgI CCRYGG 6 cut(s) 50, 135, 1671, 6054, 6603, 9031
BtgZI GCGATG 2 cut(s) 3649, 9504
BtrI CACGTC 1 cut(s) 6007
BtsI GCAGTG 5 cut(s) 664, 2887, 6309, 6697, 7260
BveI ACCTGC 2 cut(s) 677, 9246
CaiI CAGNNNCTG 6 cut(s) 663, 2396, 2437, 3548, 5441, 8960
CciI TCATGA 1 cut(s) 5002
CfoI GCGC 8 cut(s) 142, 2857, 3517, 3869, 4179, 4628, 4734, 7300
Cfr10I RCCGGY 1 cut(s) 5756
Cfr42I CCGCGG 1 cut(s) 138
Cfr9I CCCGGG 1 cut(s) 7959
ClaI ATCGAT 2 cut(s) 8865, 9503
CseI GACGC 4 cut(s) 247, 4083, 6549, 6995
CspAI ACCGGT 1 cut(s) 5756
CspCI CAANNNNNGTGG 2 cut(s) 7725, 7760
DinI GGCGCC 1 cut(s) 7299
DraI TTTAAA 2 cut(s) 4317, 8379
DraIII CACNNNGTG 1 cut(s) 109
DrdI GACNNNNNNGTC 5 cut(s) 3762, 5757, 8554, 8932, 9621
DseDI GACNNNNNNGTC 5 cut(s) 3762, 5757, 8554, 8932, 9621
EaeI YGGCCR 4 cut(s) 33, 47, 2348, 6057
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 9 cut(s) 57, 1566, 3879, 4167, 5217, 7325, 7737, 8438, 8823
EarI CTCTTC 9 cut(s) 57, 1566, 3879, 4167, 5217, 7325, 7737, 8438, 8823
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 5 cut(s) 79, 639, 3907, 5433, 8611
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 7 cut(s) 1671, 5245, 6054, 6603, 8908, 9031, 9342
Eco147I AGGCCT 1 cut(s) 603
Eco24I GRGCYC 8 cut(s) 81, 641, 2388, 3434, 3909, 4857, 5435, 8613
Eco31I GGTCTC 2 cut(s) 2840, 9312
Eco32I GATATC 3 cut(s) 1587, 2449, 4695
Eco47III AGCGCT 2 cut(s) 4178, 4627
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 5 cut(s) 79, 639, 3907, 5433, 8611
Eco81I CCTNAGG 3 cut(s) 366, 2420, 6104
Eco88I CYCGRG 4 cut(s) 74, 279, 6795, 7959
Eco91I GGTNACC 1 cut(s) 8903
EcoICRI GAGCTC 5 cut(s) 79, 639, 3907, 5433, 8611
EcoNI CCTNNNNNAGG 1 cut(s) 3998
EcoO65I GGTNACC 1 cut(s) 8903
EcoRI GAATTC 2 cut(s) 4666, 7535
EcoRV GATATC 3 cut(s) 1587, 2449, 4695
EcoT14I CCWWGG 7 cut(s) 1671, 5245, 6054, 6603, 8908, 9031, 9342
EcoT22I ATGCAT 3 cut(s) 6360, 7033, 7454
EcoT38I GRGCYC 8 cut(s) 81, 641, 2388, 3434, 3909, 4857, 5435, 8613
EgeI GGCGCC 1 cut(s) 7299
EheI GGCGCC 1 cut(s) 7299
ErhI CCWWGG 7 cut(s) 1671, 5245, 6054, 6603, 8908, 9031, 9342
Esp3I CGTCTC 4 cut(s) 4774, 6236, 7013, 8781
FalI AAGNNNNNCTT 4 cut(s) 3081, 3113, 4571, 4603
FauI CCCGC 1 cut(s) 4585
FauNDI CATATG 3 cut(s) 4548, 6043, 8167
FbaI TGATCA 4 cut(s) 93, 1777, 3166, 8464
FblI GTMKAC 7 cut(s) 759, 1557, 4097, 5678, 6351, 8111, 8254
FriOI GRGCYC 8 cut(s) 81, 641, 2388, 3434, 3909, 4857, 5435, 8613
GlaI GCGC 8 cut(s) 141, 2856, 3516, 3868, 4178, 4627, 4733, 7299
GsaI CCCAGC 1 cut(s) 2056
GsuI CTGGAG 7 cut(s) 1297, 2593, 4240, 4437, 5049, 5706, 7388
HaeII RGCGCY 4 cut(s) 143, 4180, 4629, 7301
HgaI GACGC 4 cut(s) 247, 4083, 6549, 6995
HhaI GCGC 8 cut(s) 142, 2857, 3517, 3869, 4179, 4628, 4734, 7300
Hin1I GRCGYC 4 cut(s) 258, 4767, 6547, 7298
Hin6I GCGC 8 cut(s) 140, 2855, 3515, 3867, 4177, 4626, 4732, 7298
HinP1I GCGC 8 cut(s) 140, 2855, 3515, 3867, 4177, 4626, 4732, 7298
HincII GTYRAC 7 cut(s) 692, 4765, 5887, 6352, 6972, 8319, 9675
HindII GTYRAC 7 cut(s) 692, 4765, 5887, 6352, 6972, 8319, 9675
HindIII AAGCTT 9 cut(s) 305, 347, 398, 3834, 3974, 5093, 5416, 7124, 9110
Hpy99I CGWCG 2 cut(s) 161, 5988
Hsp92I GRCGYC 4 cut(s) 258, 4767, 6547, 7298
HspAI GCGC 8 cut(s) 140, 2855, 3515, 3867, 4177, 4626, 4732, 7298
KasI GGCGCC 1 cut(s) 7297
Kpn2I TCCGGA 1 cut(s) 802
KpnI GGTACC 1 cut(s) 8841
Ksp22I TGATCA 4 cut(s) 93, 1777, 3166, 8464
KspI CCGCGG 1 cut(s) 138
LguI GCTCTTC 2 cut(s) 57, 4167
MbiI CCGCTC 2 cut(s) 12, 38
MfeI CAATTG 4 cut(s) 243, 4865, 5593, 7496
MflI RGATCY 9 cut(s) 565, 1360, 1610, 2490, 4751, 5765, 7100, 7112, 8475
MlsI TGGCCA 2 cut(s) 2350, 6059
MluNI TGGCCA 2 cut(s) 2350, 6059
Mly113I GGCGCC 1 cut(s) 7298
MmeI TCCRAC 5 cut(s) 1803, 4312, 5773, 7979, 9150
Mox20I TGGCCA 2 cut(s) 2350, 6059
Mph1103I ATGCAT 3 cut(s) 6360, 7033, 7454
MroI TCCGGA 1 cut(s) 802
MroXI GAANNNNTTC 5 cut(s) 1740, 4345, 4979, 6772, 7814
MscI TGGCCA 2 cut(s) 2350, 6059
MslI CAYNNNNRTG 7 cut(s) 1150, 1446, 2237, 4116, 5012, 6059, 7916
Msp20I TGGCCA 2 cut(s) 2350, 6059
MspA1I CMGCKG 6 cut(s) 137, 202, 950, 1133, 4808, 7309
MspCI CTTAAG 2 cut(s) 6784, 7966
MunI CAATTG 4 cut(s) 243, 4865, 5593, 7496
Mva1269I GAATGC 4 cut(s) 236, 827, 4717, 6933
MvnI CGCG 2 cut(s) 107, 137
NarI GGCGCC 1 cut(s) 7298
NciI CCSGG 5 cut(s) 153, 2079, 3429, 7960, 7961
NcoI CCATGG 4 cut(s) 1671, 6054, 6603, 9031
NdeI CATATG 3 cut(s) 4548, 6043, 8167
NheI GCTAGC 1 cut(s) 889
NsiI ATGCAT 3 cut(s) 6360, 7033, 7454
NspV TTCGAA 1 cut(s) 629
PaeI GCATGC 2 cut(s) 386, 4706
PaeR7I CTCGAG 2 cut(s) 74, 6795
PagI TCATGA 1 cut(s) 5002
PceI AGGCCT 1 cut(s) 603
PciI ACATGT 5 cut(s) 1563, 1815, 2197, 6520, 7198
PciSI GCTCTTC 2 cut(s) 57, 4167
PcsI WCGNNNNNNNCGW 3 cut(s) 5983, 9361, 9622
PctI GAATGC 4 cut(s) 236, 827, 4717, 6933
PdmI GAANNNNTTC 5 cut(s) 1740, 4345, 4979, 6772, 7814
PflMI CCANNNNNTGG 2 cut(s) 2437, 2572
PfoI TCCNGGA 1 cut(s) 4159
PinAI ACCGGT 1 cut(s) 5756
Ple19I CGATCG 1 cut(s) 9503
PluTI GGCGCC 1 cut(s) 7301
Ppu21I YACGTR 1 cut(s) 7778
PpuMI RGGWCCY 6 cut(s) 2904, 4003, 4157, 4878, 8556, 8581
PscI ACATGT 5 cut(s) 1563, 1815, 2197, 6520, 7198
PshAI GACNNNNGTC 1 cut(s) 9120
PshBI ATTAAT 1 cut(s) 8849
PsiI TTATAA 3 cut(s) 5318, 8642, 9260
Psp124BI GAGCTC 5 cut(s) 81, 641, 3909, 5435, 8613
Psp1406I AACGTT 1 cut(s) 3936
Psp5II RGGWCCY 6 cut(s) 2904, 4003, 4157, 4878, 8556, 8581
PspEI GGTNACC 1 cut(s) 8903
PspFI CCCAGC 1 cut(s) 2052
PspOMI GGGCCC 1 cut(s) 2384
PspPPI RGGWCCY 6 cut(s) 2904, 4003, 4157, 4878, 8556, 8581
PspXI VCTCGAGB 1 cut(s) 74
PstI CTGCAG 4 cut(s) 2659, 2752, 8367, 8956
PstNI CAGNNNCTG 6 cut(s) 663, 2396, 2437, 3548, 5441, 8960
PsuI RGATCY 9 cut(s) 565, 1360, 1610, 2490, 4751, 5765, 7100, 7112, 8475
PvuI CGATCG 1 cut(s) 9503
PvuII CAGCTG 4 cut(s) 202, 950, 1133, 7309
RseI CAYNNNNRTG 7 cut(s) 1150, 1446, 2237, 4116, 5012, 6059, 7916
SacI GAGCTC 5 cut(s) 81, 641, 3909, 5435, 8613
SacII CCGCGG 1 cut(s) 138
SalI GTCGAC 1 cut(s) 6350
SapI GCTCTTC 2 cut(s) 57, 4167
ScaI AGTACT 4 cut(s) 1871, 3163, 5578, 8348
SfoI GGCGCC 1 cut(s) 7299
Sfr274I CTCGAG 2 cut(s) 74, 6795
Sfr303I CCGCGG 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 629
SgrBI CCGCGG 1 cut(s) 138
SlaI CTCGAG 2 cut(s) 74, 6795
SmaI CCCGGG 1 cut(s) 7961
SmiI ATTTAAAT 1 cut(s) 8379
SmiMI CAYNNNNRTG 7 cut(s) 1150, 1446, 2237, 4116, 5012, 6059, 7916
SmlI CTYRAG 9 cut(s) 74, 3433, 3914, 4041, 5811, 6784, 6795, 7478, 7966
SmoI CTYRAG 9 cut(s) 74, 3433, 3914, 4041, 5811, 6784, 6795, 7478, 7966
SphI GCATGC 2 cut(s) 386, 4706
SseBI AGGCCT 1 cut(s) 603
SspDI GGCGCC 1 cut(s) 7297
SstI GAGCTC 5 cut(s) 81, 641, 3909, 5435, 8613
StuI AGGCCT 1 cut(s) 603
StyI CCWWGG 7 cut(s) 1671, 5245, 6054, 6603, 8908, 9031, 9342
SwaI ATTTAAAT 1 cut(s) 8379
TauI GCSGC 7 cut(s) 15, 38, 49, 140, 2546, 8104, 9654
TspGWI ACGGA 5 cut(s) 1374, 3350, 4430, 6527, 7849
TspMI CCCGGG 1 cut(s) 7959
Van91I CCANNNNNTGG 2 cut(s) 2437, 2572
Vha464I CTTAAG 2 cut(s) 6784, 7966
VneI GTGCAC 3 cut(s) 2324, 2936, 8670
VspI ATTAAT 1 cut(s) 8849
XagI CCTNNNNNAGG 1 cut(s) 3998
XhoI CTCGAG 2 cut(s) 74, 6795
XmaI CCCGGG 1 cut(s) 7959
XmaJI CCTAGG 1 cut(s) 8908
XmiI GTMKAC 7 cut(s) 759, 1557, 4097, 5678, 6351, 8111, 8254
XmnI GAANNNNTTC 5 cut(s) 1740, 4345, 4979, 6772, 7814
ZraI GACGTC 2 cut(s) 4768, 6548
ZrmI AGTACT 4 cut(s) 1871, 3163, 5578, 8348
Zsp2I ATGCAT 3 cut(s) 6360, 7033, 7454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.