Prupe.6G212900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017091
Physical Location & Seq
Forward (+)
22107162 .. 22108722
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G212900.1

Sequence Viewer

Length: 1002 bp
ATGGCACCAACAACAACCAACAACCACACCCACAGCAAGCCCCCAAAACCCAACTCCATAGTGACTACAACTACCAAACAGCCCCTCGTCTGCTTCTCCTTCGCCGCCTACGCCAAGTCCCTCATAAACCACCTCAAATCTTCACCACTCAACATCCCAGTCGAGCAAGGCCTCACCGACCCAGAGCTCGCCTCCATCGAAGCCACCTTCGACTTCGCCTTCCCGCCCGACCTCCGCGCCATTCTCCAGGAAGGCCTCCCCGTGGGCCCCACCTTCCCCAACTGGCGTTCCTCCTCCCTCCAGCAGCTCCGCATCCTCCTCAGCCTCCCGTCCTTCAGCGTCCTCCGCCGAGTCTCTGGCGGAAGCCTCTGGTGCCAGTCGTGGGGGGCCAAGCCCCCTCCAGGCGATCAAGATCATGCTGCCGTGGCCAAGCAGCTGCTGGAGAAAGCGCCGGTTCTCGTGCCGGTGCACCGGAACTGCTATGTTCCGTCGAGGCCGGGCGTGGCGGGAAATCCGGTTTTGTACGTTGACGCGGAGAACGTTACTGTTCTGAGCTGTGACGTCACCCGGTTTTTTTGTCAAGAGTTTGGGTTCGCACACGTGCCCGTGTGGGCCCCCAAGAAGACGCGAAGGATTGATTTTTGGAGCGAGGTGGTGGCGCGTGGGGAGACGAGTGGGTGGTGGAGTGGGGATGAGTGCTTGGGTGGGTGTTTGGAGGAGGTGTTTTGGAGGTTGAGGGAGGGCGGTTGGGCAGAGGAGGAGGTTAGGGAGATGATGATGATGGACGGCTGTGATGGGAAGATTGAGAAGAGCGGCGGGCTCCACTTGATGGGGGACAGCGAGGATGAGGCAGGTGTGGGGTGGCGCGTGAGGTTGCTGTCTATGGTGTTGTCGCGTGGGGGTTGGACAAGGGAAGATATTGTTGACTCTCTTGGTCTTGAGGACGAGTGCTTATGCGATAACTGGCTAGTAGATCCCTCATCAGATTATATTCACCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

36.87

Weight (kDa)

5.17

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22790
fragaria_vesca FvH4_1g18640
malus_domestica MD02G1194000.v1.1 MD15G1304100.v1.1
prunus_persica Prupe.6G212900_v2.0.a1
pyrus_communis pycom02g15800
rosa_chinensis RchiOBHm_Chr2g0109461
rosa_laevigata RLG00000017739
rosa_multiflora Rmu_sc0000332.1_g000025
rosa_roxburghii Rroxscaffold_2G00134220
rosa_rugosa Rorug02G0160300
rosa_samantha Rh2AG212400 Rh2DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 842
AatII GACGTC 1 cut(s) 564
Acc36I ACCTGC 1 cut(s) 842
AccB1I GGYRCC 2 cut(s) 4, 372
AccB7I CCANNNNNTGG 1 cut(s) 829
AccBSI CCGCTC 1 cut(s) 813
AccII CGCG 6 cut(s) 237, 533, 628, 661, 867, 895
AclI AACGTT 1 cut(s) 540
AclWI GGATC 1 cut(s) 968
AcoI YGGCCR 1 cut(s) 426
AcuI CTGAAG 1 cut(s) 319
AcvI CACGTG 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 4 cut(s) 262, 382, 401, 829
AflIII ACRYGT 1 cut(s) 598
AjnI CCWGG 2 cut(s) 246, 400
AluBI AGCT 4 cut(s) 187, 307, 436, 555
AluI AGCT 4 cut(s) 187, 307, 436, 555
Alw21I GWGCWC 2 cut(s) 189, 471
Alw26I GTCTC 2 cut(s) 358, 662
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 1 cut(s) 968
AlwNI CAGNNNCTG 1 cut(s) 439
AoxI GGCC 7 cut(s) 169, 253, 265, 387, 426, 494, 612
ApaI GGGCCC 2 cut(s) 269, 616
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 4 cut(s) 304, 419, 433, 436
AspLEI GCGC 4 cut(s) 239, 451, 661, 867
AspS9I GGNCC 5 cut(s) 265, 266, 387, 612, 613
AsuC2I CCSGG 2 cut(s) 498, 568
AsuHPI GGTGA 4 cut(s) 135, 166, 556, 986
BaeGI GKGCMC 4 cut(s) 269, 471, 606, 616
BalI TGGCCA 1 cut(s) 428
BanI GGYRCC 2 cut(s) 4, 372
BanII GRGCYC 4 cut(s) 189, 269, 616, 822
BauI CACGAG 1 cut(s) 458
BbrPI CACGTG 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 629
Bbv12I GWGCWC 2 cut(s) 189, 471
BbvCI CCTCAGC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 316, 406, 423, 445
BccI CCATC 4 cut(s) 203, 775, 788, 823
BceAI ACGGC 2 cut(s) 407, 802
BciT130I CCWGG 2 cut(s) 248, 402
BcnI CCSGG 2 cut(s) 498, 568
BcoDI GTCTC 2 cut(s) 358, 662
BfaI CTAG 1 cut(s) 968
BfmI CTRYAG 1 cut(s) 998
BfoI RGCGCY 1 cut(s) 452
BfuAI ACCTGC 1 cut(s) 842
BisI GCNGC 6 cut(s) 105, 305, 420, 434, 437, 814
BlsI GCNGC 6 cut(s) 106, 306, 421, 435, 438, 815
Bme1390I CCNGG 4 cut(s) 248, 402, 498, 568
BmgT120I GGNCC 5 cut(s) 265, 266, 387, 612, 613
BmiI GGNNCC 8 cut(s) 6, 267, 268, 374, 388, 614, 615, 821
BmrFI CCNGG 4 cut(s) 248, 402, 498, 568
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 629
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 4 cut(s) 230, 284, 384, 461
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 2 cut(s) 498, 568
BsaAI YACGTR 1 cut(s) 601
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 261, 423
BsaWI WCCGGW 2 cut(s) 471, 514
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 382, 401, 829
Bse118I RCCGGY 2 cut(s) 451, 463
Bse1I ACTGG 4 cut(s) 158, 287, 376, 968
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 2 cut(s) 248, 402
BseDI CCNNGG 2 cut(s) 261, 423
BseGI GGATG 4 cut(s) 153, 312, 697, 850
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 4 cut(s) 262, 382, 401, 829
BseMII CTCAG 2 cut(s) 334, 542
BseNI ACTGG 4 cut(s) 158, 287, 376, 968
BseRI GAGGAG 5 cut(s) 283, 308, 731, 770, 773
BseSI GKGCMC 4 cut(s) 269, 471, 606, 616
BseXI GCAGC 4 cut(s) 316, 406, 423, 445
Bsh1236I CGCG 6 cut(s) 237, 533, 628, 661, 867, 895
BshFI GGCC 7 cut(s) 171, 255, 267, 389, 428, 496, 614
BshNI GGYRCC 2 cut(s) 4, 372
BsiHKAI GWGCWC 2 cut(s) 189, 471
BsiSI CCGG 6 cut(s) 452, 464, 472, 497, 515, 568
BslFI GGGAC 2 cut(s) 103, 848
BslI CCNNNNNNNGG 4 cut(s) 262, 382, 401, 829
BsmAI GTCTC 2 cut(s) 358, 662
BsmBI CGTCTC 1 cut(s) 662
BsmFI GGGAC 2 cut(s) 103, 848
BsnI GGCC 7 cut(s) 171, 255, 267, 389, 428, 496, 614
Bsp120I GGGCCC 2 cut(s) 265, 612
Bsp1286I GDGCHC 6 cut(s) 189, 269, 471, 606, 616, 822
Bsp143I GATC 3 cut(s) 406, 412, 973
BspANI GGCC 7 cut(s) 171, 255, 267, 389, 428, 496, 614
BspCNI CTCAG 2 cut(s) 333, 543
BspFNI CGCG 6 cut(s) 237, 533, 628, 661, 867, 895
BspLI GGNNCC 8 cut(s) 6, 267, 268, 374, 388, 614, 615, 821
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 1 cut(s) 968
BspQI GCTCTTC 1 cut(s) 803
BspT107I GGYRCC 2 cut(s) 4, 372
BsrBI CCGCTC 1 cut(s) 813
BsrFI RCCGGY 2 cut(s) 451, 463
BsrI ACTGG 4 cut(s) 158, 287, 376, 968
BssAI RCCGGY 2 cut(s) 451, 463
BssECI CCNNGG 2 cut(s) 261, 423
BssMI GATC 3 cut(s) 406, 412, 973
BssNI GRCGYC 1 cut(s) 561
BssSI CACGAG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 248, 402
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 803
BstACI GRCGYC 1 cut(s) 561
BstBAI YACGTR 1 cut(s) 601
BstC8I GCNNGC 3 cut(s) 38, 189, 818
BstDEI CTNAG 2 cut(s) 320, 551
BstDSI CCRYGG 2 cut(s) 261, 423
BstF5I GGATG 4 cut(s) 153, 312, 697, 850
BstFNI CGCG 6 cut(s) 237, 533, 628, 661, 867, 895
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 4 cut(s) 239, 451, 661, 867
BstKTI GATC 3 cut(s) 409, 415, 976
BstMAI GTCTC 2 cut(s) 358, 662
BstMBI GATC 3 cut(s) 406, 412, 973
BstMWI GCNNNNNNNGC 4 cut(s) 110, 345, 372, 425
BstNI CCWGG 2 cut(s) 248, 402
BstSCI CCNGG 4 cut(s) 246, 400, 496, 566
BstSFI CTRYAG 1 cut(s) 998
BstSLI GKGCMC 4 cut(s) 269, 471, 606, 616
BstUI CGCG 6 cut(s) 237, 533, 628, 661, 867, 895
BstV1I GCAGC 4 cut(s) 316, 406, 423, 445
BstV2I GAAGAC 1 cut(s) 629
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 7 cut(s) 171, 255, 267, 389, 428, 496, 614
BtgI CCRYGG 2 cut(s) 261, 423
BtsCI GGATG 4 cut(s) 153, 312, 697, 850
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 3 cut(s) 38, 189, 818
CaiI CAGNNNCTG 1 cut(s) 439
CfoI GCGC 4 cut(s) 239, 451, 661, 867
Cfr10I RCCGGY 2 cut(s) 451, 463
Cfr13I GGNCC 5 cut(s) 265, 266, 387, 612, 613
CseI GACGC 3 cut(s) 328, 539, 634
Csp6I GTAC 1 cut(s) 523
CviAII CATG 1 cut(s) 416
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 2 cut(s) 320, 551
DpnI GATC 3 cut(s) 408, 414, 975
DpnII GATC 3 cut(s) 406, 412, 973
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
EciI GGCGGA 2 cut(s) 335, 375
Ecl136II GAGCTC 1 cut(s) 187
Eco147I AGGCCT 2 cut(s) 171, 255
Eco24I GRGCYC 4 cut(s) 189, 269, 616, 822
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 319
Eco72I CACGTG 1 cut(s) 601
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 2 cut(s) 266, 613
EcoRII CCWGG 2 cut(s) 246, 400
EcoT38I GRGCYC 4 cut(s) 189, 269, 616, 822
Esp3I CGTCTC 1 cut(s) 662
FaeI CATG 1 cut(s) 419
FaiI YATR 8 cut(s) 59, 125, 417, 483, 884, 955, 990, 1000
FaqI GGGAC 2 cut(s) 103, 848
FatI CATG 1 cut(s) 415
FauI CCCGC 3 cut(s) 231, 499, 809
Fnu4HI GCNGC 6 cut(s) 105, 305, 420, 434, 437, 814
FokI GGATG 4 cut(s) 140, 299, 704, 857
FriOI GRGCYC 4 cut(s) 189, 269, 616, 822
Fsp4HI GCNGC 6 cut(s) 105, 305, 420, 434, 437, 814
FspBI CTAG 1 cut(s) 968
GlaI GCGC 4 cut(s) 238, 450, 660, 866
GluI GCNGC 6 cut(s) 105, 305, 420, 434, 437, 814
GsuI CTGGAG 4 cut(s) 230, 284, 384, 461
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 7 cut(s) 171, 255, 267, 389, 428, 496, 614
HapII CCGG 6 cut(s) 452, 464, 472, 497, 515, 568
HgaI GACGC 3 cut(s) 328, 539, 634
HhaI GCGC 4 cut(s) 239, 451, 661, 867
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 4 cut(s) 237, 449, 659, 865
HinP1I GCGC 4 cut(s) 237, 449, 659, 865
HincII GTYRAC 2 cut(s) 529, 925
HindII GTYRAC 2 cut(s) 529, 925
HinfI GANTC 2 cut(s) 351, 926
HpaII CCGG 6 cut(s) 452, 464, 472, 497, 515, 568
HphI GGTGA 4 cut(s) 135, 166, 556, 986
Hpy166II GTNNAC 3 cut(s) 469, 529, 925
Hpy188I TCNGA 2 cut(s) 552, 985
Hpy188III TCNNGA 3 cut(s) 410, 581, 938
Hpy8I GTNNAC 3 cut(s) 469, 529, 925
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 7 cut(s) 109, 217, 229, 245, 283, 343, 624
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 4 cut(s) 525, 540, 561, 600
HpyCH4V TGCA 1 cut(s) 469
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 345, 372, 425
HpyF3I CTNAG 2 cut(s) 320, 551
HpySE526I ACGT 4 cut(s) 525, 540, 561, 600
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 4 cut(s) 237, 449, 659, 865
Kzo9I GATC 3 cut(s) 406, 412, 973
LguI GCTCTTC 1 cut(s) 803
LmnI GCTCC 3 cut(s) 312, 645, 825
Lsp1109I GCAGC 4 cut(s) 316, 406, 423, 445
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 968
MaeII ACGT 4 cut(s) 525, 540, 561, 600
MaeIII GTNAC 4 cut(s) 61, 541, 557, 562
MalI GATC 3 cut(s) 408, 414, 975
MbiI CCGCTC 1 cut(s) 813
MboI GATC 3 cut(s) 406, 412, 973
MboII GAAGA 5 cut(s) 132, 634, 811, 820, 926
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 6 cut(s) 189, 269, 471, 606, 616, 822
MlsI TGGCCA 1 cut(s) 428
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 2 cut(s) 360, 920
MmeI TCCRAC 1 cut(s) 884
Mox20I TGGCCA 1 cut(s) 428
MscI TGGCCA 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 6 cut(s) 452, 464, 472, 497, 515, 568
MspR9I CCNGG 4 cut(s) 248, 402, 498, 568
MvaI CCWGG 2 cut(s) 248, 402
MvnI CGCG 6 cut(s) 237, 533, 628, 661, 867, 895
MwoI GCNNNNNNNGC 4 cut(s) 110, 345, 372, 425
NciI CCSGG 2 cut(s) 498, 568
NdeII GATC 3 cut(s) 406, 412, 973
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 8 cut(s) 6, 267, 268, 374, 388, 614, 615, 821
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 3 cut(s) 61, 557, 562
PaqCI CACCTGC 1 cut(s) 842
PceI AGGCCT 2 cut(s) 171, 255
PciSI GCTCTTC 1 cut(s) 803
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 537
PflMI CCANNNNNTGG 1 cut(s) 829
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 6 cut(s) 106, 306, 421, 435, 438, 815
PleI GAGTC 2 cut(s) 359, 920
PmaCI CACGTG 1 cut(s) 601
PmlI CACGTG 1 cut(s) 601
PpsI GAGTC 2 cut(s) 359, 920
Ppu21I YACGTR 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 246, 400
PspCI CACGTG 1 cut(s) 601
PspGI CCWGG 2 cut(s) 246, 400
PspN4I GGNNCC 8 cut(s) 6, 267, 268, 374, 388, 614, 615, 821
PspOMI GGGCCC 2 cut(s) 265, 612
PspPI GGNCC 5 cut(s) 265, 266, 387, 612, 613
PstNI CAGNNNCTG 1 cut(s) 439
PsuI RGATCY 1 cut(s) 973
PvuII CAGCTG 1 cut(s) 436
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SacI GAGCTC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 803
SatI GCNGC 6 cut(s) 105, 305, 420, 434, 437, 814
Sau3AI GATC 3 cut(s) 406, 412, 973
Sau96I GGNCC 5 cut(s) 265, 266, 387, 612, 613
SchI GAGTC 2 cut(s) 360, 920
ScrFI CCNGG 4 cut(s) 248, 402, 498, 568
SduI GDGCHC 6 cut(s) 189, 269, 471, 606, 616, 822
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 998
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
SseBI AGGCCT 2 cut(s) 171, 255
SspMI CTAG 1 cut(s) 968
SstI GAGCTC 1 cut(s) 189
StuI AGGCCT 2 cut(s) 171, 255
StyD4I CCNGG 4 cut(s) 246, 400, 496, 566
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 4 cut(s) 528, 543, 564, 603
TaqI TCGA 4 cut(s) 162, 198, 210, 491
TauI GCSGC 2 cut(s) 107, 816
TseFI GTSAC 3 cut(s) 61, 557, 562
TseI GCWGC 4 cut(s) 304, 419, 433, 436
Tsp45I GTSAC 3 cut(s) 61, 557, 562
TspGWI ACGGA 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 829
VneI GTGCAC 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XspI CTAG 1 cut(s) 968
ZraI GACGTC 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.