AT2G23670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014059
Physical Location & Seq
Reverse (-)
10063155 .. 10063863
709 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23670.1

Sequence Viewer

Length: 504 bp
ATGGCTTCGACTGTTTCGCTTTCTTTACTCAGCGGCGGCAGTGGAGCTCTTCAGGCGCGTTGCGCAAGAACCGCGCATGTTAGCCCACGAGCGGCGCATTCTAACAAACCCGCGCTTTCTTCGTTCTCGCTGACCGGCGCCTCTCGCAGGAATCTGTTATTTTCGTTGACGGCAGCGACGGTAGTGACGGGACTTCAGCCTGCATCAATGGCGGAGAATATTCCGTTATTTGGTATAAGAAAGAAACTGAAGAAAGCAGAAGAAGAAGCGGTGGAGATCGTGAAAGAAGGCTTTGAGACGGCGGAGAAAGGCGTTGATGCGGCGGAGAAAGGATTAGAAGCGGCGGAGAGAGGTGTAGAGACGGCAGAGAAGGAAATCGTGACGGCGGTTAGCTTTAATGGATTGACACAAGCTGGAGCCGTCGTGGCGGCTGAGTTCGTCGGAGTTCTTGTCGCTACGTCAGTAGTGAATGGGATTTTAGGACCAGAAGCCCAGAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.08

Weight (kDa)

6.75

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23670
fragaria_vesca FvH4_1g14510
malus_domestica MD02G1158500.v1.1 MD15G1273300.v1.1
prunus_persica Prupe.7G145300_v2.0.a1
pyrus_communis pycom02g12500
rosa_chinensis RchiOBHm_Chr2g0103251
rosa_laevigata RLG00000017218
rosa_multiflora Rmu_sc0002218.1_g000001 Rmu_sc0006743.1_g000013
rosa_roxburghii Rroxscaffold_2G00139810
rosa_rugosa Rorug02G0112800
rosa_samantha Rh2AG161500 Rh2BG168300 Rh2CG168400 Rh2DG167200
rosa_wichuraiana Rw2G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
AccB1I GGYRCC 1 cut(s) 137
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 3 cut(s) 58, 74, 113
AcuI CTGAAG 3 cut(s) 35, 179, 269
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 3 cut(s) 91, 147, 230
AluBI AGCT 3 cut(s) 47, 393, 413
AluI AGCT 3 cut(s) 47, 393, 413
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 290, 353
ApeKI GCWGC 1 cut(s) 173
AspLEI GCGC 6 cut(s) 58, 65, 76, 97, 115, 140
AspS9I GGNCC 1 cut(s) 482
AvaII GGWCC 1 cut(s) 482
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 49
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 185
BceAI ACGGC 5 cut(s) 186, 315, 378, 399, 404
BcoDI GTCTC 2 cut(s) 290, 353
BfoI RGCGCY 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 425
BisI GCNGC 7 cut(s) 34, 37, 93, 174, 321, 342, 429
BlsI GCNGC 7 cut(s) 35, 38, 94, 175, 322, 343, 430
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 2 cut(s) 139, 418
BmsI GCATC 2 cut(s) 212, 307
BpmI CTGGAG 1 cut(s) 435
BsaHI GRCGYC 1 cut(s) 138
BsaXI ACNNNNNCTCC 4 cut(s) 408, 435, 438, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 147, 230
Bse118I RCCGGY 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 91, 147, 230
BseMII CTCAG 2 cut(s) 43, 423
BseXI GCAGC 1 cut(s) 185
Bsh1236I CGCG 3 cut(s) 58, 74, 113
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 49
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 91, 147, 230
BsmAI GTCTC 2 cut(s) 290, 353
BsmBI CGTCTC 2 cut(s) 290, 353
BsmFI GGGAC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 42, 424
BspFNI CGCG 3 cut(s) 58, 74, 113
BspLI GGNNCC 2 cut(s) 139, 418
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 13, 181
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 3 cut(s) 29, 432, 501
BstENI CCTNNNNNAGG 1 cut(s) 145
BstFNI CGCG 3 cut(s) 58, 74, 113
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 6 cut(s) 58, 65, 76, 97, 115, 140
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 2 cut(s) 290, 353
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 6 cut(s) 53, 62, 71, 144, 209, 425
BstNSI RCATGY 1 cut(s) 80
BstUI CGCG 3 cut(s) 58, 74, 113
BstV1I GCAGC 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 6 cut(s) 58, 65, 76, 97, 115, 140
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 482
CviAII CATG 1 cut(s) 77
DdeI CTNAG 3 cut(s) 29, 432, 501
DinI GGCGCC 1 cut(s) 139
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 4 cut(s) 227, 317, 338, 359
Ecl136II GAGCTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 482
Eco53kI GAGCTC 1 cut(s) 47
Eco57I CTGAAG 3 cut(s) 35, 179, 269
EcoICRI GAGCTC 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 49
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
Esp3I CGTCTC 2 cut(s) 290, 353
FaeI CATG 1 cut(s) 80
FaiI YATR 2 cut(s) 78, 236
FaqI GGGAC 1 cut(s) 204
FatI CATG 1 cut(s) 76
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 7 cut(s) 34, 37, 93, 174, 321, 342, 429
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 7 cut(s) 34, 37, 93, 174, 321, 342, 429
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 6 cut(s) 57, 64, 75, 96, 114, 139
GluI GCNGC 7 cut(s) 34, 37, 93, 174, 321, 342, 429
GsuI CTGGAG 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 141
HapII CCGG 1 cut(s) 135
HhaI GCGC 6 cut(s) 58, 65, 76, 97, 115, 140
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 6 cut(s) 56, 63, 74, 95, 113, 138
HinP1I GCGC 6 cut(s) 56, 63, 74, 95, 113, 138
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 2 cut(s) 280, 379
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 3 cut(s) 181, 425, 443
HpyAV CCTTC 2 cut(s) 281, 364
HpyCH4III ACNGT 2 cut(s) 13, 181
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 62, 71, 144, 209, 425
HpyF3I CTNAG 3 cut(s) 29, 432, 501
HpySE526I ACGT 1 cut(s) 458
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 6 cut(s) 56, 63, 74, 95, 113, 138
KasI GGCGCC 1 cut(s) 137
Kzo9I GATC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 44, 416
LpnPI CCDG 6 cut(s) 38, 133, 148, 213, 399, 498
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 2 cut(s) 212, 307
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 184, 379
MalI GATC 1 cut(s) 278
MbiI CCGCTC 1 cut(s) 92
MboI GATC 1 cut(s) 276
MboII GAAGA 5 cut(s) 41, 111, 262, 272, 275
MhlI GDGCHC 1 cut(s) 49
Mly113I GGCGCC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 2 cut(s) 151, 344
MseI TTAA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 97
MvnI CGCG 3 cut(s) 58, 74, 113
MwoI GCNNNNNNNGC 6 cut(s) 53, 62, 71, 144, 209, 425
NarI GGCGCC 1 cut(s) 138
NdeII GATC 1 cut(s) 276
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 2 cut(s) 139, 418
NmuCI GTSAC 2 cut(s) 184, 379
NsbI TGCGCA 1 cut(s) 64
NspI RCATGY 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 7 cut(s) 35, 38, 94, 175, 322, 343, 430
PluTI GGCGCC 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 139, 418
PspPI GGNCC 1 cut(s) 482
SacI GAGCTC 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 7 cut(s) 34, 37, 93, 174, 321, 342, 429
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 482
SduI GDGCHC 1 cut(s) 49
SetI ASST 5 cut(s) 49, 355, 395, 415, 461
SfaNI GCATC 2 cut(s) 212, 307
SfoI GGCGCC 1 cut(s) 139
SinI GGWCC 1 cut(s) 482
SspDI GGCGCC 1 cut(s) 137
SspI AATATT 1 cut(s) 220
SstI GAGCTC 1 cut(s) 49
TaaI ACNGT 2 cut(s) 13, 181
TaiI ACGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 8
TauI GCSGC 6 cut(s) 36, 39, 95, 323, 344, 431
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 2 cut(s) 184, 379
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 2 cut(s) 184, 379
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 145
XceI RCATGY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.