Rroxscaffold_2G00139810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014059
Physical Location & Seq
Reverse (-)
78133109 .. 78133600
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139810.1

Sequence Viewer

Length: 492 bp
ATGGCTGCGAGAGCTTCGTCAGCTGTAGTAGGCCAGGTGCTCTCACTCCACCACCCCGTCCGCAATGCCCACCGTGCCTCCTCCCCCGCCCCGCCACGTGGGGCCGCATTTCCCGGGCGGAGGGACCTGCTGCTGCTCTCGCTGACGTGGACGGCCTCGGCTGCTGTGGCGGCGCCCCCGGCAAAAGCGGAGGACATCGGGCTGTTCGGGATACGAAAGAAGCTGAAGGAAGCGGAGAGAGAAACAGAAGTGATAGTGAAGGGAGGGTTCGAGGCGGCGGAGAAGGGCATAGTAACGGCCGAGAAGGGGTTAGAAGCGGCTGAGAAGGGCATAGAAACGGCGGAGAAGGGGATCGAAACGGTGGAGAAGGGGATCGAAACGGTGGCGGGATTTGGCGGGTTGGCGCAGGCGGGACTGGTGGCGGGAGCCGAGGTTTTGGGGGTCGTGGTTGCCAGCTCAGTCGTCAATGCTATTTTGGGACCGGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

16.55

Weight (kDa)

6.32

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23670
fragaria_vesca FvH4_1g14510
malus_domestica MD02G1158500.v1.1 MD15G1273300.v1.1
prunus_persica Prupe.7G145300_v2.0.a1
pyrus_communis pycom02g12500
rosa_chinensis RchiOBHm_Chr2g0103251
rosa_laevigata RLG00000017218
rosa_multiflora Rmu_sc0002218.1_g000001 Rmu_sc0006743.1_g000013
rosa_roxburghii Rroxscaffold_2G00139810
rosa_rugosa Rorug02G0112800
rosa_samantha Rh2AG161500 Rh2BG168300 Rh2CG168400 Rh2DG167200
rosa_wichuraiana Rw2G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 172
AclWI GGATC 2 cut(s) 359, 380
AcoI YGGCCR 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 245
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 98, 120, 306
AjiI CACGTC 1 cut(s) 147
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 4 cut(s) 14, 23, 223, 456
AluI AGCT 4 cut(s) 14, 23, 223, 456
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 2 cut(s) 359, 380
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 4 cut(s) 31, 102, 153, 297
ApeKI GCWGC 4 cut(s) 5, 130, 133, 161
AspLEI GCGC 2 cut(s) 175, 406
AspS9I GGNCC 3 cut(s) 102, 124, 479
AsuC2I CCSGG 3 cut(s) 114, 115, 179
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 2 cut(s) 124, 479
BanI GGYRCC 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 117, 120, 148
BceAI ACGGC 3 cut(s) 168, 312, 354
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 204
BcnI CCSGG 3 cut(s) 114, 115, 179
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 135
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 8 cut(s) 6, 105, 131, 134, 162, 171, 276, 318
BlsI GCNGC 8 cut(s) 7, 106, 132, 135, 163, 172, 277, 319
Bme1390I CCNGG 4 cut(s) 35, 114, 115, 179
Bme18I GGWCC 2 cut(s) 124, 479
BmeT110I CYCGRG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 3 cut(s) 102, 124, 479
BmiI GGNNCC 5 cut(s) 103, 125, 174, 427, 480
BmrFI CCNGG 4 cut(s) 35, 114, 115, 179
BpuMI CCSGG 3 cut(s) 114, 115, 179
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 113, 156, 177, 429
BsaWI WCCGGW 1 cut(s) 481
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 417, 447
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 120, 306
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 4 cut(s) 113, 156, 177, 429
BseLI CCNNNNNNNGG 3 cut(s) 98, 120, 306
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 312, 471
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 1 cut(s) 70
BseX3I CGGCCG 1 cut(s) 297
BseXI GCAGC 3 cut(s) 117, 120, 148
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 4 cut(s) 33, 104, 155, 299
BshNI GGYRCC 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 3 cut(s) 114, 179, 482
BslFI GGGAC 2 cut(s) 137, 426
BslI CCNNNNNNNGG 3 cut(s) 98, 120, 306
BsmFI GGGAC 2 cut(s) 137, 426
BsnI GGCC 4 cut(s) 33, 104, 155, 299
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 351, 372
BspANI GGCC 4 cut(s) 33, 104, 155, 299
BspCNI CTCAG 2 cut(s) 313, 470
BspLI GGNNCC 5 cut(s) 103, 125, 174, 427, 480
BspMI ACCTGC 1 cut(s) 135
BspPI GGATC 2 cut(s) 359, 380
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 4 cut(s) 113, 156, 177, 429
BssMI GATC 2 cut(s) 351, 372
BssNI GRCGYC 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 3 cut(s) 74, 361, 382
BstACI GRCGYC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 408, 454
BstDEI CTNAG 2 cut(s) 321, 457
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 2 cut(s) 175, 406
BstKTI GATC 2 cut(s) 354, 375
BstMBI GATC 2 cut(s) 351, 372
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 8 cut(s) 11, 20, 74, 139, 161, 167, 170, 179
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 4 cut(s) 33, 112, 113, 177
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 117, 120, 148
BstZI CGGCCG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 4 cut(s) 33, 104, 155, 299
BtrI CACGTC 1 cut(s) 147
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 408, 454
CfoI GCGC 2 cut(s) 175, 406
Cfr13I GGNCC 3 cut(s) 102, 124, 479
Cfr9I CCCGGG 1 cut(s) 113
DdeI CTNAG 2 cut(s) 321, 457
DinI GGCGCC 1 cut(s) 174
DpnI GATC 2 cut(s) 353, 374
DpnII GATC 2 cut(s) 351, 372
EaeI YGGCCR 1 cut(s) 297
EagI CGGCCG 1 cut(s) 297
EciI GGCGGA 3 cut(s) 133, 293, 356
EclXI CGGCCG 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 124, 479
Eco52I CGGCCG 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 33
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
FaiI YATR 2 cut(s) 290, 332
FaqI GGGAC 2 cut(s) 137, 426
FauI CCCGC 6 cut(s) 94, 99, 379, 389, 403, 415
Fnu4HI GCNGC 8 cut(s) 6, 105, 131, 134, 162, 171, 276, 318
Fsp4HI GCNGC 8 cut(s) 6, 105, 131, 134, 162, 171, 276, 318
GlaI GCGC 2 cut(s) 174, 405
GluI GCNGC 8 cut(s) 6, 105, 131, 134, 162, 171, 276, 318
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 4 cut(s) 33, 104, 155, 299
HapII CCGG 3 cut(s) 114, 179, 482
HhaI GCGC 2 cut(s) 175, 406
Hin1I GRCGYC 1 cut(s) 173
Hin6I GCGC 2 cut(s) 173, 404
HinP1I GCGC 2 cut(s) 173, 404
HpaII CCGG 3 cut(s) 114, 179, 482
Hpy166II GTNNAC 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 7 cut(s) 220, 253, 277, 298, 319, 340, 361
HpyCH4III ACNGT 3 cut(s) 74, 361, 382
HpyCH4IV ACGT 2 cut(s) 97, 146
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 20, 74, 139, 161, 167, 170, 179
HpyF3I CTNAG 2 cut(s) 321, 457
HpySE526I ACGT 2 cut(s) 97, 146
Hsp92I GRCGYC 1 cut(s) 173
HspAI GCGC 2 cut(s) 173, 404
KasI GGCGCC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 351, 372
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 8 cut(s) 20, 47, 127, 140, 192, 392, 401, 466
Lsp1109I GCAGC 3 cut(s) 117, 120, 148
MaeII ACGT 2 cut(s) 97, 146
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 353, 374
MboI GATC 2 cut(s) 351, 372
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 487
Mly113I GGCGCC 1 cut(s) 173
MnlI CCTC 8 cut(s) 88, 91, 114, 166, 184, 257, 265, 424
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 3 cut(s) 114, 179, 482
MspR9I CCNGG 4 cut(s) 35, 114, 115, 179
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 8 cut(s) 11, 20, 74, 139, 161, 167, 170, 179
NarI GGCGCC 1 cut(s) 173
NciI CCSGG 3 cut(s) 114, 115, 179
NdeII GATC 2 cut(s) 351, 372
NlaIV GGNNCC 5 cut(s) 103, 125, 174, 427, 480
NmeAIII GCCGAG 3 cut(s) 137, 325, 454
PkrI GCNGC 8 cut(s) 7, 106, 132, 135, 163, 172, 277, 319
PluTI GGCGCC 1 cut(s) 176
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 33
PspCI CACGTG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 5 cut(s) 103, 125, 174, 427, 480
PspPI GGNCC 3 cut(s) 102, 124, 479
PspPPI RGGWCCY 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 23
SatI GCNGC 8 cut(s) 6, 105, 131, 134, 162, 171, 276, 318
Sau3AI GATC 2 cut(s) 351, 372
Sau96I GGNCC 3 cut(s) 102, 124, 479
ScrFI CCNGG 4 cut(s) 35, 114, 115, 179
SduI GDGCHC 1 cut(s) 42
SetI ASST 9 cut(s) 16, 25, 39, 100, 129, 149, 225, 435, 458
SfcI CTRYAG 1 cut(s) 24
SfoI GGCGCC 1 cut(s) 174
SinI GGWCC 2 cut(s) 124, 479
SmaI CCCGGG 1 cut(s) 115
Sse9I AATT 1 cut(s) 487
SspDI GGCGCC 1 cut(s) 172
StyD4I CCNGG 4 cut(s) 33, 112, 113, 177
TaaI ACNGT 3 cut(s) 74, 361, 382
TaiI ACGT 2 cut(s) 100, 149
TaqI TCGA 3 cut(s) 270, 354, 375
TasI AATT 1 cut(s) 487
TauI GCSGC 4 cut(s) 107, 173, 278, 320
TseI GCWGC 4 cut(s) 5, 130, 133, 161
TspMI CCCGGG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 124, 479
XmaI CCCGGG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.