FvH4_1g14510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014059
Physical Location & Seq
Forward (+)
8094048 .. 8094984
937 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14510.t1

Sequence Viewer

Length: 462 bp
ATGGCTGCGAGAGCTTCTTCAGCTGTAGGCCAAGTCGTCCTCTCACTCCACCACCCCGTCCGCAATGCCTCCTCCCCCTCGCCGCCACGTGTATCCGCATTTCCCGGGAGGAGGGACCTGCTCCTGCTCTCGCTGACATGGACGGCCTCGGCTGCTGTCGCAACTGCCCCGGCAAAAGCGGAGGACATCGGGCTTTTCGGGATACGTAAGAAGCTGAAGGAGGCGGAGAGAGAGACGGAGGCGATAGTGAAGGAAGGCTTCGAGGCGGCGGAGAAGGGCATCGAGACGGCGGAGAAGGGCATCAAGACGGCGGAGAAGGGTATCGAAACGGCGGAGAAGGAGATCGAAACGGTGGCGGGGTTTGGCGGGTTGGCGCAGGCGGGACTGGTGGTGGGAGCTGAGGTTGTGGGGGTAGTGGTTGCTAGCTCTGTTGTCAATGCGATTTTGGGGCCGGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

15.67

Weight (kDa)

5.77

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23670
fragaria_vesca FvH4_1g14510
malus_domestica MD02G1158500.v1.1 MD15G1273300.v1.1
prunus_persica Prupe.7G145300_v2.0.a1
pyrus_communis pycom02g12500
rosa_chinensis RchiOBHm_Chr2g0103251
rosa_laevigata RLG00000017218
rosa_multiflora Rmu_sc0002218.1_g000001 Rmu_sc0006743.1_g000013
rosa_roxburghii Rroxscaffold_2G00139810
rosa_rugosa Rorug02G0112800
rosa_samantha Rh2AG161500 Rh2BG168300 Rh2CG168400 Rh2DG167200
rosa_wichuraiana Rw2G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 236
AcvI CACGTG 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 88
AluBI AGCT 5 cut(s) 14, 23, 214, 398, 426
AluI AGCT 5 cut(s) 14, 23, 214, 398, 426
Alw26I GTCTC 2 cut(s) 227, 278
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 3 cut(s) 28, 144, 449
ApeKI GCWGC 2 cut(s) 5, 152
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 115, 449
AsuC2I CCSGG 3 cut(s) 105, 106, 170
AsuNHI GCTAGC 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 89
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 139
BceAI ACGGC 4 cut(s) 159, 303, 324, 345
BciVI GTATCC 2 cut(s) 103, 195
BcnI CCSGG 3 cut(s) 105, 106, 170
BcoDI GTCTC 2 cut(s) 227, 278
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 126
BfuI GTATCC 2 cut(s) 103, 195
BisI GCNGC 4 cut(s) 6, 83, 153, 267
BlsI GCNGC 4 cut(s) 7, 84, 154, 268
Bme1390I CCNGG 3 cut(s) 105, 106, 170
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 115, 449
BmiI GGNNCC 2 cut(s) 116, 450
BmrFI CCNGG 3 cut(s) 105, 106, 170
BmsI GCATC 2 cut(s) 288, 309
BmtI GCTAGC 1 cut(s) 426
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 3 cut(s) 105, 106, 170
BsaAI YACGTR 2 cut(s) 89, 206
BsaJI CCNNGG 3 cut(s) 104, 147, 168
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 104, 147, 168
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 61, 124
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 3 cut(s) 30, 146, 451
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 3 cut(s) 105, 170, 452
BslFI GGGAC 2 cut(s) 128, 396
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 227, 278
BsmBI CGTCTC 2 cut(s) 227, 278
BsmFI GGGAC 2 cut(s) 128, 396
BsnI GGCC 3 cut(s) 30, 146, 451
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 1 cut(s) 342
BspANI GGCC 3 cut(s) 30, 146, 451
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 116, 450
BspMI ACCTGC 1 cut(s) 126
BspOI GCTAGC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 3 cut(s) 104, 147, 168
BssMI GATC 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 352
BstBAI YACGTR 2 cut(s) 89, 206
BstC8I GCNNGC 2 cut(s) 378, 424
BstDEI CTNAG 1 cut(s) 399
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 2 cut(s) 227, 278
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 152, 158
BstSCI CCNGG 3 cut(s) 103, 104, 168
BstSFI CTRYAG 1 cut(s) 24
BstSNI TACGTA 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 139
BsuI GTATCC 2 cut(s) 103, 195
BsuRI GGCC 3 cut(s) 30, 146, 451
BveI ACCTGC 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 378, 424
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 115, 449
Cfr9I CCCGGG 1 cut(s) 104
CviAII CATG 1 cut(s) 138
DdeI CTNAG 1 cut(s) 399
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
EciI GGCGGA 5 cut(s) 239, 284, 305, 326, 347
Eco105I TACGTA 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 236
Eco72I CACGTG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 115
Esp3I CGTCTC 2 cut(s) 227, 278
FaeI CATG 1 cut(s) 141
FaiI YATR 1 cut(s) 139
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 2 cut(s) 128, 396
FatI CATG 1 cut(s) 137
FauI CCCGC 3 cut(s) 349, 359, 373
Fnu4HI GCNGC 4 cut(s) 6, 83, 153, 267
Fsp4HI GCNGC 4 cut(s) 6, 83, 153, 267
FspBI CTAG 1 cut(s) 423
GlaI GCGC 1 cut(s) 375
GluI GCNGC 4 cut(s) 6, 83, 153, 267
HaeIII GGCC 3 cut(s) 30, 146, 451
HapII CCGG 3 cut(s) 105, 170, 452
HhaI GCGC 1 cut(s) 376
Hin1II CATG 1 cut(s) 141
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HpaII CCGG 3 cut(s) 105, 170, 452
Hpy188III TCNNGA 3 cut(s) 199, 283, 304
HpyAV CCTTC 7 cut(s) 211, 244, 248, 268, 289, 310, 331
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 88, 205
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 152, 158
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 88, 205
Hsp92II CATG 1 cut(s) 141
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 126, 395
LpnPI CCDG 6 cut(s) 118, 131, 137, 183, 362, 371
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 288, 309
MaeI CTAG 1 cut(s) 423
MaeII ACGT 2 cut(s) 88, 205
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 3 cut(s) 105, 170, 452
MspR9I CCNGG 3 cut(s) 105, 106, 170
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 152, 158
NciI CCSGG 3 cut(s) 105, 106, 170
NdeII GATC 1 cut(s) 342
NheI GCTAGC 1 cut(s) 422
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 2 cut(s) 116, 450
NmeAIII GCCGAG 1 cut(s) 128
PkrI GCNGC 4 cut(s) 7, 84, 154, 268
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 2 cut(s) 89, 206
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
PspCI CACGTG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 116, 450
PspPI GGNCC 2 cut(s) 115, 449
PspPPI RGGWCCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 23
SatI GCNGC 4 cut(s) 6, 83, 153, 267
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 2 cut(s) 115, 449
ScrFI CCNGG 3 cut(s) 105, 106, 170
SetI ASST 9 cut(s) 16, 25, 91, 120, 208, 216, 400, 405, 428
SfaNI GCATC 2 cut(s) 288, 309
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 115
SmaI CCCGGG 1 cut(s) 106
SnaBI TACGTA 1 cut(s) 206
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 3 cut(s) 103, 104, 168
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 2 cut(s) 91, 208
TaqI TCGA 4 cut(s) 261, 282, 324, 345
TauI GCSGC 2 cut(s) 85, 269
TseI GCWGC 2 cut(s) 5, 152
TspGWI ACGGA 1 cut(s) 251
TspMI CCCGGG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 115
XmaI CCCGGG 1 cut(s) 104
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.