Prupe.7G145300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014059
Physical Location & Seq
Reverse (-)
15884650 .. 15885135
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G145300.1

Sequence Viewer

Length: 486 bp
ATGGCTACTGCGAGAGCCTCAGTTCTAGCTCTCCACCCAGTGCGCAATGCGCCCCGCAACTCCCCCACGGCGGCCTCCAAACCTGCGCCGCCACGTGGACTCGCATTACCCGGGCGGAGACAGCTGGCGCTGTCGCTGACGTGGACCGCGGCGCTGGCGGCTGTGGCGGTGGAGGCGAAGGCGGAAGACATCGGGCTGTTTGGGCTGAAGAGGAAGCTGAAGGAGGCGGAGAGGGGGGCGGAGGTGATAGTGAAGGAAGGGTTCGAGGCGGCGGAGAAAGGCATCGAAACGGCGGAGAAGGGACTCGAAACGGCGGAGAAGGGGCTGGAAACAGCAGAGCGAGGGATCGAAACGGCGGAGAAAGGGGTGGAGGCTGTGGTGAGCTTTGGCGGGCTAGCGCAGGCTGGAGCGGTGGCGGGAGCGGAGGTTGTGGGGATTTTGGTGGCGACTTCGGTCGTGAATGGGATTTTGGGGCCAGAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

16.34

Weight (kDa)

5.97

Isoelectric Point (pI)

26.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23670
fragaria_vesca FvH4_1g14510
malus_domestica MD02G1158500.v1.1 MD15G1273300.v1.1
prunus_persica Prupe.7G145300_v2.0.a1
pyrus_communis pycom02g12500
rosa_chinensis RchiOBHm_Chr2g0103251
rosa_laevigata RLG00000017218
rosa_multiflora Rmu_sc0002218.1_g000001 Rmu_sc0006743.1_g000013
rosa_roxburghii Rroxscaffold_2G00139810
rosa_rugosa Rorug02G0112800
rosa_samantha Rh2AG161500 Rh2BG168300 Rh2CG168400 Rh2DG167200
rosa_wichuraiana Rw2G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 91
AccBSI CCGCTC 2 cut(s) 410, 422
AccII CGCG 1 cut(s) 149
AclWI GGATC 1 cut(s) 353
AcuI CTGAAG 2 cut(s) 227, 239
AcvI CACGTG 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 70, 95
AjiI CACGTC 1 cut(s) 141
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 4 cut(s) 29, 124, 217, 384
AluI AGCT 4 cut(s) 29, 124, 217, 384
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 72, 473
AspLEI GCGC 6 cut(s) 45, 52, 88, 130, 154, 400
AspS9I GGNCC 2 cut(s) 144, 473
AsuC2I CCSGG 2 cut(s) 111, 112
AsuHPI GGTGA 2 cut(s) 256, 391
AsuNHI GCTAGC 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 144
BbrPI CACGTG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 192
BceAI ACGGC 4 cut(s) 84, 306, 327, 369
BcnI CCSGG 2 cut(s) 111, 112
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 2 cut(s) 26, 395
BfoI RGCGCY 2 cut(s) 131, 155
BfuAI ACCTGC 1 cut(s) 91
BisI GCNGC 5 cut(s) 72, 89, 150, 159, 270
BlsI GCNGC 5 cut(s) 73, 90, 151, 160, 271
Bme1390I CCNGG 2 cut(s) 111, 112
Bme18I GGWCC 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 144, 473
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 2 cut(s) 111, 112
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 291
BmtI GCTAGC 1 cut(s) 398
BmuI ACTGGG 1 cut(s) 32
BoxI GACNNNNGTC 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 426
BpuMI CCSGG 2 cut(s) 111, 112
BsaAI YACGTR 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 66, 110, 147
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 95
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 52
BseDI CCNNGG 3 cut(s) 66, 110, 147
BseLI CCNNNNNNNGG 2 cut(s) 70, 95
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 2 cut(s) 74, 475
BsiEI CGRYCG 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 70, 95
BsmAI GTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 2 cut(s) 74, 475
BsoBI CYCGRG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 345
BspANI GGCC 2 cut(s) 74, 475
BspCNI CTCAG 1 cut(s) 32
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 474
BspMI ACCTGC 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 353
BsrBI CCGCTC 2 cut(s) 410, 422
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 3 cut(s) 66, 110, 147
BssMI GATC 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 95
BstC8I GCNNGC 5 cut(s) 126, 156, 392, 396, 402
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 2 cut(s) 66, 147
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 2 cut(s) 131, 155
BstHHI GCGC 6 cut(s) 45, 52, 88, 130, 154, 400
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 345
BstMCI CGRYCG 1 cut(s) 456
BstMWI GCNNNNNNNGC 7 cut(s) 49, 121, 155, 158, 164, 173, 202
BstPAI GACNNNNGTC 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 109, 110
BstUI CGCG 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 2 cut(s) 74, 475
BtgI CCRYGG 2 cut(s) 66, 147
BtrI CACGTC 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 5 cut(s) 126, 156, 392, 396, 402
CfoI GCGC 6 cut(s) 45, 52, 88, 130, 154, 400
Cfr13I GGNCC 2 cut(s) 144, 473
Cfr42I CCGCGG 1 cut(s) 150
Cfr9I CCCGGG 1 cut(s) 110
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
EciI GGCGGA 8 cut(s) 130, 197, 242, 254, 287, 308, 329, 371
Eco47I GGWCC 1 cut(s) 144
Eco57I CTGAAG 2 cut(s) 227, 239
Eco72I CACGTG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 110
FaqI GGGAC 1 cut(s) 315
FauI CCCGC 3 cut(s) 62, 383, 409
Fnu4HI GCNGC 5 cut(s) 72, 89, 150, 159, 270
Fsp4HI GCNGC 5 cut(s) 72, 89, 150, 159, 270
FspBI CTAG 2 cut(s) 26, 395
FspI TGCGCA 1 cut(s) 44
GlaI GCGC 6 cut(s) 44, 51, 87, 129, 153, 399
GluI GCNGC 5 cut(s) 72, 89, 150, 159, 270
GsuI CTGGAG 1 cut(s) 426
HaeII RGCGCY 2 cut(s) 131, 155
HaeIII GGCC 2 cut(s) 74, 475
HapII CCGG 1 cut(s) 111
HhaI GCGC 6 cut(s) 45, 52, 88, 130, 154, 400
Hin6I GCGC 6 cut(s) 43, 50, 86, 128, 152, 398
HinP1I GCGC 6 cut(s) 43, 50, 86, 128, 152, 398
HinfI GANTC 2 cut(s) 99, 303
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 256, 391
Hpy166II GTNNAC 2 cut(s) 98, 144
Hpy188III TCNNGA 1 cut(s) 457
Hpy8I GTNNAC 2 cut(s) 98, 144
HpyAV CCTTC 6 cut(s) 172, 214, 247, 251, 292, 313
HpyCH4IV ACGT 2 cut(s) 94, 140
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 121, 155, 158, 164, 173, 202
HpyF3I CTNAG 1 cut(s) 19
HpySE526I ACGT 2 cut(s) 94, 140
HspAI GCGC 6 cut(s) 43, 50, 86, 128, 152, 398
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 407, 419
LpnPI CCDG 8 cut(s) 51, 96, 110, 124, 140, 311, 386, 390
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 26, 395
MaeII ACGT 2 cut(s) 94, 140
MalI GATC 1 cut(s) 347
MbiI CCGCTC 2 cut(s) 410, 422
MboI GATC 1 cut(s) 345
MboII GAAGA 2 cut(s) 197, 220
MlyI GAGTC 2 cut(s) 93, 297
MspA1I CMGCKG 2 cut(s) 124, 149
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 111, 112
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 7 cut(s) 49, 121, 155, 158, 164, 173, 202
NciI CCSGG 2 cut(s) 111, 112
NdeII GATC 1 cut(s) 345
NheI GCTAGC 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 474
NsbI TGCGCA 1 cut(s) 44
PkrI GCNGC 5 cut(s) 73, 90, 151, 160, 271
PleI GAGTC 2 cut(s) 93, 297
PmaCI CACGTG 1 cut(s) 95
PmlI CACGTG 1 cut(s) 95
PpsI GAGTC 2 cut(s) 93, 297
Ppu21I YACGTR 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 452
PspCI CACGTG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 2 cut(s) 144, 473
PvuII CAGCTG 1 cut(s) 124
SacII CCGCGG 1 cut(s) 150
SatI GCNGC 5 cut(s) 72, 89, 150, 159, 270
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 2 cut(s) 144, 473
SchI GAGTC 2 cut(s) 93, 297
ScrFI CCNGG 2 cut(s) 111, 112
SetI ASST 9 cut(s) 31, 85, 97, 126, 143, 219, 246, 386, 429
SfaNI GCATC 1 cut(s) 291
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 1 cut(s) 144
SmaI CCCGGG 1 cut(s) 112
SspMI CTAG 2 cut(s) 26, 395
StyD4I CCNGG 2 cut(s) 109, 110
TaiI ACGT 2 cut(s) 97, 143
TaqI TCGA 4 cut(s) 264, 285, 306, 348
TaqII GACCGA 1 cut(s) 442
TauI GCSGC 5 cut(s) 74, 91, 152, 161, 272
TscAI CASTG 1 cut(s) 45
TspMI CCCGGG 1 cut(s) 110
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 144
XmaI CCCGGG 1 cut(s) 110
XspI CTAG 2 cut(s) 26, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.