pycom02g12500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014059
Physical Location & Seq
Forward (+)
9088415 .. 9088867
453 bp
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UTR
Exon/CDS
Intron
pycom02g12500.1

Sequence Viewer

Length: 453 bp
ATGGCTGCGAGAGCTTCAGTACTCGCTCTCCACCCAGCGCGCAATGCGCACCGCAGCTCCTCCTCCTCCCCGGCGCACGTTCCGAAGCCTGCGCCGCCGAGTGGACTCGCATTATCCGGGCGGAGACAGCTGGCGCTGTCGCTGACGTGGACGGCGGCGATTGCGGCTGTGTGTGCGAAGGAGGCGAAGGCGGAAGACATCGGGCTGTTTGGGCTGAGGAGGAAGGTGAAGGAGGCGGAGAAGGAGGCGGAGGTGATAGTGAAGGAAGGGATTGAGGCGGCGGAGAAGGGGCTAGAATCGGCGGAGCTGGGGATTGAAACGGCGGAGGAAGGGGTGGAGGCGGCGTTGAGCTTCGGGGGTTTGGCGCAGGCTGGAGTGGTGGCGGGAGCGGAGGTTGTGGGGGTTTTGGTGGCAACTTCGGTTGTGAGTGGGATTCTGGGGCCGGAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.1

Weight (kDa)

5.66

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23670
fragaria_vesca FvH4_1g14510
malus_domestica MD02G1158500.v1.1 MD15G1273300.v1.1
prunus_persica Prupe.7G145300_v2.0.a1
pyrus_communis pycom02g12500
rosa_chinensis RchiOBHm_Chr2g0103251
rosa_laevigata RLG00000017218
rosa_multiflora Rmu_sc0002218.1_g000001 Rmu_sc0006743.1_g000013
rosa_roxburghii Rroxscaffold_2G00139810
rosa_rugosa Rorug02G0112800
rosa_samantha Rh2AG161500 Rh2BG168300 Rh2CG168400 Rh2DG167200
rosa_wichuraiana Rw2G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 48
AccBSI CCGCTC 1 cut(s) 389
AccII CGCG 1 cut(s) 40
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 317
AjiI CACGTC 1 cut(s) 147
AluBI AGCT 5 cut(s) 14, 57, 130, 307, 351
AluI AGCT 5 cut(s) 14, 57, 130, 307, 351
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 5, 54
AspLEI GCGC 7 cut(s) 40, 42, 49, 76, 94, 136, 367
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 2 cut(s) 71, 118
AsuHPI GGTGA 2 cut(s) 238, 265
BbsI GAAGAC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 66
BceAI ACGGC 2 cut(s) 168, 336
BcnI CCSGG 2 cut(s) 71, 118
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 7 cut(s) 6, 55, 95, 156, 165, 279, 342
BlsI GCNGC 7 cut(s) 7, 56, 96, 157, 166, 280, 343
BmcAI AGTACT 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 71, 118
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 2 cut(s) 71, 118
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 71, 118
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 8 cut(s) 12, 41, 42, 71, 329, 359, 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 206
BsePI GCGCGC 1 cut(s) 38
BseRI GAGGAG 4 cut(s) 49, 52, 55, 232
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 2 cut(s) 34, 307
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 442
BsiSI CCGG 3 cut(s) 71, 117, 443
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 118
BsnI GGCC 1 cut(s) 442
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 207
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 441
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 69
BssHII GCGCGC 1 cut(s) 38
BstC8I GCNNGC 4 cut(s) 40, 90, 132, 369
BstDEI CTNAG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 40
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 7 cut(s) 40, 42, 49, 76, 94, 136, 367
BstMAI GTCTC 1 cut(s) 118
BstSCI CCNGG 2 cut(s) 69, 116
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 442
BtrI CACGTC 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 40, 90, 132, 369
CfoI GCGC 7 cut(s) 40, 42, 49, 76, 94, 136, 367
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 20
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 215
EciI GGCGGA 7 cut(s) 136, 206, 251, 263, 296, 317, 338
FauI CCCGC 1 cut(s) 376
Fnu4HI GCNGC 7 cut(s) 6, 55, 95, 156, 165, 279, 342
Fsp4HI GCNGC 7 cut(s) 6, 55, 95, 156, 165, 279, 342
FspAI RTGCGCAY 1 cut(s) 48
FspBI CTAG 1 cut(s) 293
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 7 cut(s) 39, 41, 48, 75, 93, 135, 366
GluI GCNGC 7 cut(s) 6, 55, 95, 156, 165, 279, 342
GsaI CCCAGC 2 cut(s) 38, 311
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 1 cut(s) 442
HapII CCGG 3 cut(s) 71, 117, 443
HhaI GCGC 7 cut(s) 40, 42, 49, 76, 94, 136, 367
Hin6I GCGC 7 cut(s) 38, 40, 47, 74, 92, 134, 365
HinP1I GCGC 7 cut(s) 38, 40, 47, 74, 92, 134, 365
HinfI GANTC 3 cut(s) 105, 296, 433
HpaII CCGG 3 cut(s) 71, 117, 443
HphI GGTGA 2 cut(s) 238, 265
Hpy166II GTNNAC 2 cut(s) 104, 150
Hpy188I TCNGA 1 cut(s) 84
Hpy8I GTNNAC 2 cut(s) 104, 150
HpyAV CCTTC 9 cut(s) 172, 181, 217, 223, 235, 256, 260, 280, 323
HpyCH4IV ACGT 2 cut(s) 78, 146
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 2 cut(s) 78, 146
HspAI GCGC 7 cut(s) 38, 40, 47, 74, 92, 134, 365
LmnI GCTCC 3 cut(s) 62, 304, 386
LpnPI CCDG 9 cut(s) 48, 84, 102, 116, 130, 293, 353, 357, 422
Lsp1109I GCAGC 1 cut(s) 66
MaeI CTAG 1 cut(s) 293
MaeII ACGT 2 cut(s) 78, 146
MbiI CCGCTC 1 cut(s) 389
MboII GAAGA 1 cut(s) 206
MlyI GAGTC 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 3 cut(s) 71, 117, 443
MspR9I CCNGG 2 cut(s) 71, 118
MvnI CGCG 1 cut(s) 40
NciI CCSGG 2 cut(s) 71, 118
NlaIV GGNNCC 1 cut(s) 441
NmeAIII GCCGAG 1 cut(s) 123
NsbI TGCGCA 1 cut(s) 48
PauI GCGCGC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 296, 433
PkrI GCNGC 7 cut(s) 7, 56, 96, 157, 166, 280, 343
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PspFI CCCAGC 2 cut(s) 34, 307
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 1 cut(s) 440
PteI GCGCGC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SatI GCNGC 7 cut(s) 6, 55, 95, 156, 165, 279, 342
Sau96I GGNCC 1 cut(s) 440
ScaI AGTACT 1 cut(s) 21
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 71, 118
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 69, 116
TaiI ACGT 2 cut(s) 81, 149
TatI WGTACW 1 cut(s) 19
TauI GCSGC 5 cut(s) 97, 158, 167, 281, 344
TfiI GAWTC 2 cut(s) 296, 433
TseI GCWGC 2 cut(s) 5, 54
XspI CTAG 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.