Rorug02G0112800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014059
Physical Location & Seq
Forward (+)
9648181 .. 9650255
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0112800.1

Sequence Viewer

Length: 1032 bp
ATGAAAACCGCGTTCCAGATCGACTATATATACACCATTAAATCTCACACATACTCCATACCATCAAAAGCCTCCATGAAAATGAAGCTACATTCCTTTATCATCATCTCCCTCACTTTGTTGCTAGGTATCTCCGCAGAACAATGCGGTAGCCAAGCCGGTGGCGCCACCTGCCCGAATGGGCTATGTTGTAGCGAGTTTGGCTGGTGTGGCAGCACAGCCGATTACTGTACTAAAAATTGCCAAAGCCAATGTAGTTCAGGCGGTGGCTCAACCCCTTCTCCGACCCCAAGTGGCGGCGGCGGCGATGTTGCCGGCCTCGTTAGCTCCTCTCTCTTTGATCAAATGCTCAAGTATCGCAACGATGCACGGTGCAAGGGCAACGGTTTCTACAAGTATGATGCTTTCATTGCTGCTGCTCGATCATTCCCTGGGTTTGGCACCACTGGAGATGATGCAACGCGCAAGAAGGAGCTCGCTGCTTTCTTAGCTCAAACCTCTCATGAGACCACTGGTGGATGGGCAAGTGCACCAGATGGTCCTTATGCATGGGGTTATTGCTTTGTCAATGAAAACAACCAGGATGTGCATTGTACATCCCCAGAATATCCATGTGCTCCTGGCAAGAAATACTATGGTCGAGGACCCATTCAACTCACCCACAATTACAACTATGATCAAGCGGGTAAAGCAATCGGAGCGGATCTAATAAACAATCCGGACTTAGTGGCCACAGACCCGGTTGTATCATTCAAGACAGCAATATGGTTTTGGATGACTCCACAATCAAACAAACCATCAAGCCACGACGTCATTACCGGCCGTTGGAACCCATCTGATGCAGATAAATCCGCGGGTCGGGTCCCTGGATATGGTGTGATTACTAACATCATCAATGGTGGACTTGAATGTGGTCATGGTCAAGATGATAAGGTTGCGGATAGGATCGGGTTCTATACGAGGTACACGGGCATATTGGGAGTGAGCCCTGGAGACAACTTGGATTGCTATAACCAAAGGCCTTTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

36.75

Weight (kDa)

6.63

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 48 - 85 6.9e-14 Chitin recognition protein
Glyco_hydro_19 PF00182 107 - 336 7.6e-130 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23670
fragaria_vesca FvH4_1g14510
malus_domestica MD02G1158500.v1.1 MD15G1273300.v1.1
prunus_persica Prupe.7G145300_v2.0.a1
pyrus_communis pycom02g12500
rosa_chinensis RchiOBHm_Chr2g0103251
rosa_laevigata RLG00000017218
rosa_multiflora Rmu_sc0002218.1_g000001 Rmu_sc0006743.1_g000013
rosa_roxburghii Rroxscaffold_2G00139810
rosa_rugosa Rorug02G0112800
rosa_samantha Rh2AG161500 Rh2BG168300 Rh2CG168400 Rh2DG167200
rosa_wichuraiana Rw2G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 179
AatII GACGTC 1 cut(s) 813
Acc36I ACCTGC 1 cut(s) 179
AccB1I GGYRCC 2 cut(s) 164, 440
AccBSI CCGCTC 1 cut(s) 701
AccII CGCG 3 cut(s) 11, 463, 854
AccIII TCCGGA 1 cut(s) 718
AclWI GGATC 2 cut(s) 711, 953
AcoI YGGCCR 2 cut(s) 729, 820
AcyI GRCGYC 2 cut(s) 165, 810
AfaI GTAC 3 cut(s) 232, 595, 965
AfiI CCNNNNNNNGG 5 cut(s) 296, 437, 825, 858, 872
AgsI TTSAA 3 cut(s) 653, 754, 908
AjnI CCWGG 5 cut(s) 430, 579, 619, 865, 988
AluBI AGCT 4 cut(s) 88, 327, 475, 491
AluI AGCT 4 cut(s) 88, 327, 475, 491
Alw21I GWGCWC 3 cut(s) 477, 532, 619
Alw26I GTCTC 2 cut(s) 500, 987
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 2 cut(s) 711, 953
Aor13HI TCCGGA 1 cut(s) 718
AoxI GGCC 4 cut(s) 316, 729, 820, 1019
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 4 cut(s) 213, 413, 416, 479
AspLEI GCGC 2 cut(s) 167, 465
AspS9I GGNCC 3 cut(s) 539, 644, 862
AsuC2I CCSGG 1 cut(s) 740
AsuHPI GGTGA 1 cut(s) 649
AvaII GGWCC 3 cut(s) 539, 644, 862
BaeGI GKGCMC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 2 cut(s) 164, 440
BanII GRGCYC 2 cut(s) 477, 989
Bbv12I GWGCWC 3 cut(s) 477, 532, 619
BbvI GCAGC 4 cut(s) 225, 400, 403, 466
BccI CCATC 5 cut(s) 70, 513, 530, 805, 841
BceAI ACGGC 1 cut(s) 807
BciT130I CCWGG 5 cut(s) 432, 581, 621, 867, 990
BclI TGATCA 2 cut(s) 340, 676
BcnI CCSGG 1 cut(s) 740
BcoDI GTCTC 2 cut(s) 500, 987
BfaI CTAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 7 cut(s) 214, 298, 301, 304, 414, 417, 480
BlsI GCNGC 7 cut(s) 215, 299, 302, 305, 415, 418, 481
Bme1390I CCNGG 6 cut(s) 432, 581, 621, 740, 867, 990
Bme18I GGWCC 3 cut(s) 539, 644, 862
BmgT120I GGNCC 3 cut(s) 539, 644, 862
BmiI GGNNCC 6 cut(s) 166, 442, 646, 830, 863, 864
BmrFI CCNGG 6 cut(s) 432, 581, 621, 740, 867, 990
BmsI GCATC 4 cut(s) 355, 391, 445, 829
BpmI CTGGAG 2 cut(s) 468, 1011
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 740
BsaHI GRCGYC 2 cut(s) 165, 810
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 5 cut(s) 430, 431, 852, 865, 988
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 265, 295
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 437, 825, 858, 872
Bse118I RCCGGY 3 cut(s) 158, 314, 818
Bse1I ACTGG 2 cut(s) 451, 517
Bse3DI GCAATG 1 cut(s) 408
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 5 cut(s) 432, 581, 621, 867, 990
BseDI CCNNGG 5 cut(s) 430, 431, 852, 865, 988
BseGI GGATG 4 cut(s) 524, 589, 596, 780
BseLI CCNNNNNNNGG 5 cut(s) 296, 437, 825, 858, 872
BseMI GCAATG 1 cut(s) 408
BseNI ACTGG 2 cut(s) 451, 517
BseRI GAGGAG 1 cut(s) 319
BseSI GKGCMC 1 cut(s) 532
BseX3I CGGCCG 1 cut(s) 820
BseXI GCAGC 4 cut(s) 225, 400, 403, 466
Bsh1236I CGCG 3 cut(s) 11, 463, 854
Bsh1285I CGRYCG 1 cut(s) 823
BshFI GGCC 4 cut(s) 318, 731, 822, 1021
BshNI GGYRCC 2 cut(s) 164, 440
BsiEI CGRYCG 1 cut(s) 823
BsiHKAI GWGCWC 3 cut(s) 477, 532, 619
BsiSI CCGG 5 cut(s) 159, 315, 719, 740, 819
BslFI GGGAC 1 cut(s) 848
BslI CCNNNNNNNGG 5 cut(s) 296, 437, 825, 858, 872
BsmAI GTCTC 2 cut(s) 500, 987
BsmFI GGGAC 1 cut(s) 848
BsnI GGCC 4 cut(s) 318, 731, 822, 1021
Bso31I GGTCTC 1 cut(s) 500
Bsp1286I GDGCHC 4 cut(s) 477, 532, 619, 989
Bsp13I TCCGGA 1 cut(s) 718
Bsp1407I TGTACA 1 cut(s) 593
Bsp143I GATC 6 cut(s) 18, 340, 422, 676, 703, 945
BspANI GGCC 4 cut(s) 318, 731, 822, 1021
BspEI TCCGGA 1 cut(s) 718
BspFNI CGCG 3 cut(s) 11, 463, 854
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 6 cut(s) 166, 442, 646, 830, 863, 864
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 711, 953
BspT107I GGYRCC 2 cut(s) 164, 440
BspTNI GGTCTC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 701
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 3 cut(s) 158, 314, 818
BsrGI TGTACA 1 cut(s) 593
BsrI ACTGG 2 cut(s) 451, 517
BssAI RCCGGY 3 cut(s) 158, 314, 818
BssECI CCNNGG 5 cut(s) 430, 431, 852, 865, 988
BssMI GATC 6 cut(s) 18, 340, 422, 676, 703, 945
BssNI GRCGYC 2 cut(s) 165, 810
Bst2UI CCWGG 5 cut(s) 432, 581, 621, 867, 990
Bst4CI ACNGT 3 cut(s) 230, 372, 386
BstACI GRCGYC 2 cut(s) 165, 810
BstAUI TGTACA 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 316, 477
BstDEI CTNAG 2 cut(s) 487, 724
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 4 cut(s) 524, 589, 596, 780
BstFNI CGCG 3 cut(s) 11, 463, 854
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 167, 465
BstKTI GATC 6 cut(s) 21, 343, 425, 679, 706, 948
BstMAI GTCTC 2 cut(s) 500, 987
BstMBI GATC 6 cut(s) 18, 340, 422, 676, 703, 945
BstMCI CGRYCG 1 cut(s) 823
BstNI CCWGG 5 cut(s) 432, 581, 621, 867, 990
BstSCI CCNGG 6 cut(s) 430, 579, 619, 738, 865, 988
BstSLI GKGCMC 1 cut(s) 532
BstUI CGCG 3 cut(s) 11, 463, 854
BstV1I GCAGC 4 cut(s) 225, 400, 403, 466
BstX2I RGATCY 1 cut(s) 703
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 1 cut(s) 703
BstZI CGGCCG 1 cut(s) 820
BsuRI GGCC 4 cut(s) 318, 731, 822, 1021
BtgI CCRYGG 1 cut(s) 852
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 4 cut(s) 524, 589, 596, 780
BtsIMutI CAGTG 2 cut(s) 444, 510
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 316, 477
CciI TCATGA 1 cut(s) 502
CfoI GCGC 2 cut(s) 167, 465
Cfr10I RCCGGY 3 cut(s) 158, 314, 818
Cfr13I GGNCC 3 cut(s) 539, 644, 862
Cfr42I CCGCGG 1 cut(s) 855
Csp6I GTAC 3 cut(s) 231, 594, 964
CviAII CATG 5 cut(s) 76, 503, 549, 612, 917
CviQI GTAC 3 cut(s) 231, 594, 964
DdeI CTNAG 2 cut(s) 487, 724
DinI GGCGCC 1 cut(s) 166
DpnI GATC 6 cut(s) 20, 342, 424, 678, 705, 947
DpnII GATC 6 cut(s) 18, 340, 422, 676, 703, 945
EaeI YGGCCR 2 cut(s) 729, 820
EagI CGGCCG 1 cut(s) 820
Ecl136II GAGCTC 1 cut(s) 475
EclXI CGGCCG 1 cut(s) 820
Eco147I AGGCCT 1 cut(s) 1021
Eco24I GRGCYC 2 cut(s) 477, 989
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 3 cut(s) 539, 644, 862
Eco52I CGGCCG 1 cut(s) 820
Eco53kI GAGCTC 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 2 cut(s) 644, 862
EcoRII CCWGG 5 cut(s) 430, 579, 619, 865, 988
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 2 cut(s) 477, 989
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
FaeI CATG 5 cut(s) 79, 506, 552, 615, 920
FaqI GGGAC 1 cut(s) 848
FatI CATG 5 cut(s) 75, 502, 548, 611, 916
FauI CCCGC 2 cut(s) 676, 847
FbaI TGATCA 2 cut(s) 340, 676
Fnu4HI GCNGC 7 cut(s) 214, 298, 301, 304, 414, 417, 480
FokI GGATG 4 cut(s) 531, 583, 596, 787
FriOI GRGCYC 2 cut(s) 477, 989
Fsp4HI GCNGC 7 cut(s) 214, 298, 301, 304, 414, 417, 480
FspBI CTAG 1 cut(s) 125
GlaI GCGC 2 cut(s) 166, 464
GluI GCNGC 7 cut(s) 214, 298, 301, 304, 414, 417, 480
GsuI CTGGAG 2 cut(s) 468, 1011
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 4 cut(s) 318, 731, 822, 1021
HapII CCGG 5 cut(s) 159, 315, 719, 740, 819
HhaI GCGC 2 cut(s) 167, 465
Hin1I GRCGYC 2 cut(s) 165, 810
Hin1II CATG 5 cut(s) 79, 506, 552, 615, 920
Hin6I GCGC 2 cut(s) 165, 463
HinP1I GCGC 2 cut(s) 165, 463
HinfI GANTC 1 cut(s) 778
HpaII CCGG 5 cut(s) 159, 315, 719, 740, 819
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 3 cut(s) 530, 902, 966
Hpy188I TCNGA 3 cut(s) 285, 698, 838
Hpy188III TCNNGA 5 cut(s) 16, 503, 719, 754, 923
Hpy8I GTNNAC 3 cut(s) 530, 902, 966
Hpy99I CGWCG 1 cut(s) 812
HpyAV CCTTC 2 cut(s) 288, 463
HpyCH4III ACNGT 3 cut(s) 230, 372, 386
HpyCH4IV ACGT 1 cut(s) 810
HpyCH4V TGCA 7 cut(s) 368, 375, 458, 530, 548, 589, 842
HpyF3I CTNAG 2 cut(s) 487, 724
HpySE526I ACGT 1 cut(s) 810
Hsp92I GRCGYC 2 cut(s) 165, 810
Hsp92II CATG 5 cut(s) 79, 506, 552, 615, 920
HspAI GCGC 2 cut(s) 165, 463
KasI GGCGCC 1 cut(s) 164
KflI GGGWCCC 1 cut(s) 862
Kpn2I TCCGGA 1 cut(s) 718
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
Ksp22I TGATCA 2 cut(s) 340, 676
KspI CCGCGG 1 cut(s) 855
Kzo9I GATC 6 cut(s) 18, 340, 422, 676, 703, 945
LmnI GCTCC 4 cut(s) 332, 472, 622, 698
Lsp1109I GCAGC 4 cut(s) 225, 400, 403, 466
LweI GCATC 4 cut(s) 355, 391, 445, 829
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 810
MalI GATC 6 cut(s) 20, 342, 424, 678, 705, 947
MbiI CCGCTC 1 cut(s) 701
MboI GATC 6 cut(s) 18, 340, 422, 676, 703, 945
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 4 cut(s) 477, 532, 619, 989
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 2 cut(s) 238, 664
MluNI TGGCCA 1 cut(s) 731
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 1 cut(s) 772
MmeI TCCRAC 2 cut(s) 308, 806
MnlI CCTC 7 cut(s) 82, 122, 329, 340, 508, 635, 954
Mox20I TGGCCA 1 cut(s) 731
Mph1103I ATGCAT 1 cut(s) 550
MroI TCCGGA 1 cut(s) 718
MroNI GCCGGC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 731
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 5 cut(s) 159, 315, 719, 740, 819
MspR9I CCNGG 6 cut(s) 432, 581, 621, 740, 867, 990
MvaI CCWGG 5 cut(s) 432, 581, 621, 867, 990
MvnI CGCG 3 cut(s) 11, 463, 854
NaeI GCCGGC 1 cut(s) 316
NarI GGCGCC 1 cut(s) 165
NciI CCSGG 1 cut(s) 740
NdeII GATC 6 cut(s) 18, 340, 422, 676, 703, 945
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 5 cut(s) 79, 506, 552, 615, 920
NlaIV GGNNCC 6 cut(s) 166, 442, 646, 830, 863, 864
NsiI ATGCAT 1 cut(s) 550
PagI TCATGA 1 cut(s) 502
PaqCI CACCTGC 1 cut(s) 179
PasI CCCWGGG 1 cut(s) 431
PceI AGGCCT 1 cut(s) 1021
PdiI GCCGGC 1 cut(s) 316
PkrI GCNGC 7 cut(s) 215, 299, 302, 305, 415, 418, 481
PleI GAGTC 1 cut(s) 772
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 772
PpuMI RGGWCCY 2 cut(s) 644, 862
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 2 cut(s) 644, 862
Psp6I CCWGG 5 cut(s) 430, 579, 619, 865, 988
PspGI CCWGG 5 cut(s) 430, 579, 619, 865, 988
PspN4I GGNNCC 6 cut(s) 166, 442, 646, 830, 863, 864
PspPI GGNCC 3 cut(s) 539, 644, 862
PspPPI RGGWCCY 2 cut(s) 644, 862
PsuI RGATCY 1 cut(s) 703
RsaI GTAC 3 cut(s) 232, 595, 965
RsaNI GTAC 3 cut(s) 231, 594, 964
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 477
SacII CCGCGG 1 cut(s) 855
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 7 cut(s) 214, 298, 301, 304, 414, 417, 480
Sau3AI GATC 6 cut(s) 18, 340, 422, 676, 703, 945
Sau96I GGNCC 3 cut(s) 539, 644, 862
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 6 cut(s) 432, 581, 621, 740, 867, 990
SduI GDGCHC 4 cut(s) 477, 532, 619, 989
SfaNI GCATC 4 cut(s) 355, 391, 445, 829
SfoI GGCGCC 1 cut(s) 166
Sfr303I CCGCGG 1 cut(s) 855
SgrBI CCGCGG 1 cut(s) 855
SinI GGWCC 3 cut(s) 539, 644, 862
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 2 cut(s) 238, 664
SseBI AGGCCT 1 cut(s) 1021
SspDI GGCGCC 1 cut(s) 164
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 477
StuI AGGCCT 1 cut(s) 1021
StyD4I CCNGG 6 cut(s) 430, 579, 619, 738, 865, 988
TaaI ACNGT 3 cut(s) 230, 372, 386
TaiI ACGT 1 cut(s) 813
TaqI TCGA 3 cut(s) 21, 421, 640
TasI AATT 2 cut(s) 238, 664
TatI WGTACW 2 cut(s) 230, 593
TauI GCSGC 3 cut(s) 300, 303, 306
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 2 cut(s) 451, 517
TseI GCWGC 4 cut(s) 213, 413, 416, 479
TspDTI ATGAA 5 cut(s) 17, 92, 98, 397, 585
TspRI CASTG 2 cut(s) 451, 517
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 3 cut(s) 539, 644, 862
XspI CTAG 1 cut(s) 125
ZraI GACGTC 1 cut(s) 811
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.