AT2G23945

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017135
Physical Location & Seq
Reverse (-)
10185229 .. 10186738
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23945.1

Sequence Viewer

Length: 1377 bp
ATGGAATGTTCTTTCCAAACTTCACTCTTACTCTTCATCACTGTATCATACTTTGTAGTAACAGAATCCATTAAACCTAACCGAATGGCGATGAAGCTGATACACCGTGAATCAGTGGCCCGTCTCAACCCAAATGCTCGAGTTCCGATCACTCCAGAAGACCATATCAAACACCTGACAGATATTTCATCAGCCCGGTTTAAGTATCTACAGAATTCGATTGACAAAGAGCTAGGCAGCAGCAATTTCCAAGTTGATGTGGAACAAGCAATCAAAACATCATTGTTTCTTGTGAATTTCTCCGTAGGACAGCCACCGGTGCCGCAGTTAACTATCATGGATACTGGAAGCTCACTTTTATGGATCCAATGTCAACCCTGCAAACACTGCTCATCAGATCATATGATCCATCCTGTCTTCAATCCAGCATTGTCTTCAACATTTGTAGAGTGTTCCTGCGATGATCGTTTTTGCAGGTATGCACCAAACGGACATTGCGGCTCATCAAACAAGTGTGTTTACGAACAAGTGTATATAAGCGGCACTGGGTCAAAAGGCGTTCTAGCTAAAGAACGGTTAACCTTCACAACACCTAACGGTAACACTGTTGTGACCCAACCTATTGCTTTTGGGTGTGGCTACGAGAATGGAGAGCAGTTGGAAAGTCATTTCACTGGTATTTTGGGGTTAGGAGCCAAACCCACATCACTTGCCGTACAGCTTGGGTCTAAATTCTCTTACTGCATTGGTGATTTAGCTAACAAAAACTACGGTTACAATCAGCTGGTTCTGGGAGAGGACGCGGATATTCTCGGCGATCCAACACCCATTGAATTTGAGACAGAGAATAGTATCTACTATATGAATCTAGAAGGGATTAGTGTTGGGGATACACAACTCAATATCGAACCAGTGGTATTCAAAAGAAGAGGACCAAGAACAGGGGTCATACTAGACTCGGGCACACTCTACACTTGGCTAGCAGATATAGCCTACAGAGAACTCTACAATGAAATAAAATCCATTCTGGATCCAAAATTAGAGAGATTCTGGTTTAGAGACTTCTTGTGCTACCATGGGAGAGTGAGCGAAGAGCTCATAGGCTTCCCTGTGGTGACATTTCATTTTGCAGGCGGAGCTGAGCTGGCTATGGAGGCCACAAGCATGTTTTATCCATTATCAGAACCGAATACGTTTAACGTCTTTTGTATGTCAGTGAAGCCAACCAAAGAACATGGAGGGGAATATAAGGAATTCACAGCTATAGGGCTAATGGCTCAACAATACTATAATATTGGTTACGACCTCAAAGAAAAAAACATCTATCTCCAGAGAATCGACTGTGTTCAACTCGATGACTATTCCCCATCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

458

Amino Acids

51.35

Weight (kDa)

5.37

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 96 - 265 3.4e-40 Xylanase inhibitor N-terminal
Asp PF00026 99 - 441 2.6e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 286 - 442 3.1e-19 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23945 AT4G30030 AT4G30040
fragaria_vesca FvH4_4g07480
malus_domestica MD16G1251100.v1.1 MD16G1251300.v1.1
prunus_persica Prupe.1G077600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399921
rosa_rugosa Rorug04G0020200
rosa_samantha Rh4BG094700 Rh4CG106400 Rh4DG091200
rosa_wichuraiana Rw4G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 319
AccII CGCG 1 cut(s) 803
AciI CCGC 5 cut(s) 323, 498, 540, 803, 1134
AclWI GGATC 6 cut(s) 358, 371, 400, 812, 1025, 1038
AcsI RAATTY 5 cut(s) 214, 295, 731, 833, 1253
AfaI GTAC 1 cut(s) 717
AfiI CCNNNNNNNGG 1 cut(s) 941
AgeI ACCGGT 1 cut(s) 316
AgsI TTSAA 5 cut(s) 421, 438, 833, 922, 1349
AleI CACNNNNGTG 1 cut(s) 608
Alw21I GWGCWC 1 cut(s) 1098
Alw26I GTCTC 3 cut(s) 128, 833, 1053
AlwI GGATC 6 cut(s) 358, 371, 400, 812, 1025, 1038
Ama87I CYCGRG 2 cut(s) 138, 958
AoxI GGCC 2 cut(s) 117, 1155
ApeKI GCWGC 2 cut(s) 237, 240
ApoI RAATTY 5 cut(s) 214, 295, 731, 833, 1253
AsiGI ACCGGT 1 cut(s) 316
AspS9I GGNCC 2 cut(s) 118, 932
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 761, 1126
AsuNHI GCTAGC 1 cut(s) 979
AvaI CYCGRG 2 cut(s) 138, 958
AvaII GGWCC 1 cut(s) 932
BaeGI GKGCMC 1 cut(s) 965
BamHI GGATCC 2 cut(s) 363, 1030
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 1098
BbsI GAAGAC 3 cut(s) 165, 409, 426
Bbv12I GWGCWC 1 cut(s) 1098
BbvI GCAGC 2 cut(s) 249, 252
BccI CCATC 2 cut(s) 417, 1375
BceAI ACGGC 1 cut(s) 698
BciVI GTATCC 2 cut(s) 334, 883
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 3 cut(s) 128, 833, 1053
BfaI CTAG 5 cut(s) 233, 563, 869, 953, 980
BfmI CTRYAG 3 cut(s) 209, 994, 1263
BfuAI ACCTGC 1 cut(s) 465
BfuI GTATCC 2 cut(s) 334, 883
BisI GCNGC 5 cut(s) 238, 241, 323, 499, 541
BlpI GCTNAGC 1 cut(s) 1140
BlsI GCNGC 5 cut(s) 239, 242, 324, 500, 542
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 932
BmeT110I CYCGRG 2 cut(s) 138, 958
BmgT120I GGNCC 2 cut(s) 118, 932
BmiI GGNNCC 4 cut(s) 321, 365, 694, 1032
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 555
BmtI GCTAGC 1 cut(s) 983
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 3 cut(s) 165, 409, 426
BpmI CTGGAG 2 cut(s) 138, 1313
Bpu1102I GCTNAGC 1 cut(s) 1140
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 1075
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 941
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 4 cut(s) 349, 550, 679, 911
Bse3DI GCAATG 1 cut(s) 493
BseDI CCNNGG 1 cut(s) 1075
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 941
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 1131
BseNI ACTGG 4 cut(s) 349, 550, 679, 911
BseSI GKGCMC 1 cut(s) 965
BseXI GCAGC 2 cut(s) 249, 252
Bsh1236I CGCG 1 cut(s) 803
BshFI GGCC 2 cut(s) 119, 1157
BshNI GGYRCC 1 cut(s) 319
BshTI ACCGGT 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 1098
BsiHKCI CYCGRG 2 cut(s) 138, 958
BsiSI CCGG 2 cut(s) 196, 317
BslI CCNNNNNNNGG 1 cut(s) 941
BsmAI GTCTC 3 cut(s) 128, 833, 1053
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 119, 1157
BsoBI CYCGRG 2 cut(s) 138, 958
Bsp1286I GDGCHC 2 cut(s) 965, 1098
Bsp143I GATC 7 cut(s) 147, 363, 397, 405, 463, 817, 1030
Bsp1720I GCTNAGC 1 cut(s) 1140
Bsp19I CCATGG 1 cut(s) 1075
BspACI CCGC 5 cut(s) 323, 498, 540, 803, 1134
BspANI GGCC 2 cut(s) 119, 1157
BspCNI CTCAG 1 cut(s) 1132
BspFNI CGCG 1 cut(s) 803
BspLI GGNNCC 4 cut(s) 321, 365, 694, 1032
BspMI ACCTGC 1 cut(s) 465
BspOI GCTAGC 1 cut(s) 983
BspPI GGATC 6 cut(s) 358, 371, 400, 812, 1025, 1038
BspQI GCTCTTC 1 cut(s) 1086
BspT107I GGYRCC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 4 cut(s) 349, 550, 679, 911
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 1075
BssMI GATC 7 cut(s) 147, 363, 397, 405, 463, 817, 1030
BssT1I CCWWGG 1 cut(s) 1075
Bst4CI ACNGT 7 cut(s) 43, 107, 576, 599, 607, 773, 1343
Bst6I CTCTTC 3 cut(s) 38, 922, 1086
BstAPI GCANNNNNTGC 1 cut(s) 387
BstC8I GCNNGC 3 cut(s) 981, 1132, 1146
BstDEI CTNAG 1 cut(s) 1140
BstDSI CCRYGG 1 cut(s) 1075
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 803
BstKTI GATC 7 cut(s) 150, 366, 400, 408, 466, 820, 1033
BstMAI GTCTC 3 cut(s) 128, 833, 1053
BstMBI GATC 7 cut(s) 147, 363, 397, 405, 463, 817, 1030
BstMWI GCNNNNNNNGC 6 cut(s) 319, 387, 989, 1136, 1145, 1154
BstNSI RCATGY 1 cut(s) 1168
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 3 cut(s) 209, 994, 1263
BstSLI GKGCMC 1 cut(s) 965
BstUI CGCG 1 cut(s) 803
BstV1I GCAGC 2 cut(s) 249, 252
BstV2I GAAGAC 3 cut(s) 165, 409, 426
BstX2I RGATCY 2 cut(s) 363, 1030
BstYI RGATCY 2 cut(s) 363, 1030
BsuI GTATCC 2 cut(s) 334, 883
BsuRI GGCC 2 cut(s) 119, 1157
BtgI CCRYGG 1 cut(s) 1075
BtgZI GCGATG 2 cut(s) 104, 474
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 8 cut(s) 39, 120, 385, 543, 603, 672, 918, 1221
BveI ACCTGC 1 cut(s) 465
Cac8I GCNNGC 3 cut(s) 981, 1132, 1146
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 118, 932
CseI GACGC 1 cut(s) 809
Csp6I GTAC 1 cut(s) 716
CspAI ACCGGT 1 cut(s) 316
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 4 cut(s) 337, 1076, 1165, 1235
CviQI GTAC 1 cut(s) 716
DdeI CTNAG 1 cut(s) 1140
DpnI GATC 7 cut(s) 149, 365, 399, 407, 465, 819, 1032
DpnII GATC 7 cut(s) 147, 363, 397, 405, 463, 817, 1030
Eam1104I CTCTTC 3 cut(s) 38, 922, 1086
EarI CTCTTC 3 cut(s) 38, 922, 1086
EciI GGCGGA 1 cut(s) 1149
Ecl136II GAGCTC 1 cut(s) 1096
Eco130I CCWWGG 1 cut(s) 1075
Eco24I GRGCYC 1 cut(s) 1098
Eco47I GGWCC 1 cut(s) 932
Eco53kI GAGCTC 1 cut(s) 1096
Eco88I CYCGRG 2 cut(s) 138, 958
EcoICRI GAGCTC 1 cut(s) 1096
EcoRI GAATTC 2 cut(s) 214, 1253
EcoT14I CCWWGG 1 cut(s) 1075
EcoT38I GRGCYC 1 cut(s) 1098
ErhI CCWWGG 1 cut(s) 1075
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 4 cut(s) 340, 1079, 1168, 1238
FatI CATG 4 cut(s) 336, 1075, 1164, 1234
FauNDI CATATG 1 cut(s) 402
Fnu4HI GCNGC 5 cut(s) 238, 241, 323, 499, 541
FokI GGATG 1 cut(s) 396
FriOI GRGCYC 1 cut(s) 1098
Fsp4HI GCNGC 5 cut(s) 238, 241, 323, 499, 541
FspBI CTAG 5 cut(s) 233, 563, 869, 953, 980
GluI GCNGC 5 cut(s) 238, 241, 323, 499, 541
GsuI CTGGAG 2 cut(s) 138, 1313
HaeIII GGCC 2 cut(s) 119, 1157
HapII CCGG 2 cut(s) 196, 317
HgaI GACGC 1 cut(s) 809
Hin1II CATG 4 cut(s) 340, 1079, 1168, 1238
HincII GTYRAC 3 cut(s) 330, 374, 579
HindII GTYRAC 3 cut(s) 330, 374, 579
HinfI GANTC 6 cut(s) 65, 110, 865, 956, 1047, 1335
HpaI GTTAAC 2 cut(s) 330, 579
HpaII CCGG 2 cut(s) 196, 317
HphI GGTGA 2 cut(s) 761, 1126
Hpy166II GTNNAC 4 cut(s) 330, 374, 520, 579
Hpy188I TCNGA 3 cut(s) 147, 397, 1183
Hpy188III TCNNGA 4 cut(s) 155, 869, 1028, 1330
Hpy8I GTNNAC 4 cut(s) 330, 374, 520, 579
HpyAV CCTTC 2 cut(s) 592, 866
HpyCH4III ACNGT 7 cut(s) 43, 107, 576, 599, 607, 773, 1343
HpyCH4IV ACGT 2 cut(s) 1193, 1200
HpyCH4V TGCA 5 cut(s) 381, 474, 482, 744, 1130
HpyF10VI GCNNNNNNNGC 6 cut(s) 319, 387, 989, 1136, 1145, 1154
HpyF3I CTNAG 1 cut(s) 1140
HpySE526I ACGT 2 cut(s) 1193, 1200
Hsp92II CATG 4 cut(s) 340, 1079, 1168, 1238
KspAI GTTAAC 2 cut(s) 330, 579
Kzo9I GATC 7 cut(s) 147, 363, 397, 405, 463, 817, 1030
LguI GCTCTTC 1 cut(s) 1086
LmnI GCTCC 2 cut(s) 692, 1136
Lsp1109I GCAGC 2 cut(s) 249, 252
MaeI CTAG 5 cut(s) 233, 563, 869, 953, 980
MaeII ACGT 2 cut(s) 1193, 1200
MaeIII GTNAC 6 cut(s) 58, 599, 610, 773, 1114, 1298
MalI GATC 7 cut(s) 149, 365, 399, 407, 465, 819, 1032
MboI GATC 7 cut(s) 147, 363, 397, 405, 463, 817, 1030
MboII GAAGA 6 cut(s) 25, 170, 409, 426, 939, 1103
MflI RGATCY 2 cut(s) 363, 1030
MhlI GDGCHC 2 cut(s) 965, 1098
MluCI AATT 7 cut(s) 214, 244, 295, 731, 833, 1037, 1253
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 2 cut(s) 639, 845
MnlI CCTC 5 cut(s) 790, 923, 1147, 1232, 1316
MseI TTAA 5 cut(s) 72, 201, 329, 578, 1197
MslI CAYNNNNRTG 3 cut(s) 358, 608, 1163
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 2 cut(s) 196, 317
MspR9I CCNGG 1 cut(s) 196
MvnI CGCG 1 cut(s) 803
MwoI GCNNNNNNNGC 6 cut(s) 319, 387, 989, 1136, 1145, 1154
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 1075
NdeI CATATG 1 cut(s) 402
NdeII GATC 7 cut(s) 147, 363, 397, 405, 463, 817, 1030
NheI GCTAGC 1 cut(s) 979
NlaIII CATG 4 cut(s) 340, 1079, 1168, 1238
NlaIV GGNNCC 4 cut(s) 321, 365, 694, 1032
NmeAIII GCCGAG 1 cut(s) 792
NmuCI GTSAC 2 cut(s) 610, 1114
NspI RCATGY 1 cut(s) 1168
OliI CACNNNNGTG 1 cut(s) 608
PaeR7I CTCGAG 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 1086
PfeI GAWTC 5 cut(s) 65, 110, 865, 1047, 1335
PinAI ACCGGT 1 cut(s) 316
PkrI GCNGC 5 cut(s) 239, 242, 324, 500, 542
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
Psp124BI GAGCTC 1 cut(s) 1098
PspN4I GGNNCC 4 cut(s) 321, 365, 694, 1032
PspPI GGNCC 2 cut(s) 118, 932
PspXI VCTCGAGB 1 cut(s) 138
PsuI RGATCY 2 cut(s) 363, 1030
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 1 cut(s) 717
RsaNI GTAC 1 cut(s) 716
RseI CAYNNNNRTG 3 cut(s) 358, 608, 1163
SacI GAGCTC 1 cut(s) 1098
SapI GCTCTTC 1 cut(s) 1086
SaqAI TTAA 5 cut(s) 72, 201, 329, 578, 1197
SatI GCNGC 5 cut(s) 238, 241, 323, 499, 541
Sau3AI GATC 7 cut(s) 147, 363, 397, 405, 463, 817, 1030
Sau96I GGNCC 2 cut(s) 118, 932
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 965, 1098
SfcI CTRYAG 3 cut(s) 209, 994, 1263
Sfr274I CTCGAG 1 cut(s) 138
SgrAI CRCCGGYG 1 cut(s) 316
SinI GGWCC 1 cut(s) 932
SlaI CTCGAG 1 cut(s) 138
SmiMI CAYNNNNRTG 3 cut(s) 358, 608, 1163
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 7 cut(s) 214, 244, 295, 731, 833, 1037, 1253
SsiI CCGC 5 cut(s) 323, 498, 540, 803, 1134
SspI AATATT 1 cut(s) 1294
SspMI CTAG 5 cut(s) 233, 563, 869, 953, 980
SstI GAGCTC 1 cut(s) 1098
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 1075
TaaI ACNGT 7 cut(s) 43, 107, 576, 599, 607, 773, 1343
TaiI ACGT 2 cut(s) 1196, 1203
TaqI TCGA 5 cut(s) 139, 218, 906, 1338, 1353
TasI AATT 7 cut(s) 214, 244, 295, 731, 833, 1037, 1253
TauI GCSGC 3 cut(s) 325, 501, 543
TfiI GAWTC 5 cut(s) 65, 110, 865, 1047, 1335
Tru1I TTAA 5 cut(s) 72, 201, 329, 578, 1197
Tru9I TTAA 5 cut(s) 72, 201, 329, 578, 1197
TscAI CASTG 8 cut(s) 46, 120, 392, 550, 610, 679, 918, 1221
TseFI GTSAC 2 cut(s) 610, 1114
TseI GCWGC 2 cut(s) 237, 240
Tsp45I GTSAC 2 cut(s) 610, 1114
TspDTI ATGAA 6 cut(s) 25, 107, 177, 878, 1026, 1112
TspGWI ACGGA 2 cut(s) 292, 504
TspRI CASTG 8 cut(s) 46, 120, 392, 550, 610, 679, 918, 1221
VpaK11BI GGWCC 1 cut(s) 932
XapI RAATTY 5 cut(s) 214, 295, 731, 833, 1253
XbaI TCTAGA 1 cut(s) 868
XceI RCATGY 1 cut(s) 1168
XhoI CTCGAG 1 cut(s) 138
XspI CTAG 5 cut(s) 233, 563, 869, 953, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.