Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017135

Physical Location & Seq

Genomic Coordinates Reverse (-)

5599205 .. 5600557

Gene Structure 1353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCAGCCCAGTTTGCAAAACCTGTTAGGCTCTCGCTTACTAATTTTGTTATTTTCTTAAATTTGTTATGCTTAACCGCCACAGCTTCCACCATCGAAAGACCAAGGAGTTTTGCAACAAAACTCATTCATCGCGATTCGGCTTTGTCTCCTTACTACAACCCTAATGCAACCATCAAAGACCATGCTATGCACACGTTGAAAACCTCCATGGCACGCTTAGCATACTTGGGAGCAAAGTCTATTGTTTTTGTGACAGACGATACTCGTGCCGGGCTTGTTGGTGAGGACAATGGAGCACAATTCATGGCAAGTTTCTCAATCGGTGAGCCACCAGTTCCACAGCTCTTGACCGTAGACACAGGCAGCAACTTATTGTGGGTTCAATGCCTTCCTTGCACCAAGTGTTTTGAACAAGCCACTCCACTTTTTGACCCTTCCAAGTCCTCAACATACACCACATTACAATGCAACTCTCCCTATTGCACCATTTCCCCTAGTGACAAATGTGACCCCTCAAACAATTGCAAGTTCTCTCACAAGTACCTTGATGGCACTGATGTAGCCGGACTTCTTGGGACCGAAAAGTTCACCTTGGACACGTCCGACGAAGGCATTAGCCCTGTCGCAAATGTGGTTTTTGGTTGTGCCGATGACAATGATGGTTACAATGGCCAACCTAGTGGAAATACTTGGTCTTGGACCTTCAAGCATATCTTTGGCAACCCAATTGGGGTCAAAATTCTCTTATTGCATTGCATAAAGGATCCTAAGTACCCTCATAACCAACTAATCTTAGGCGATGGTGCAAAGATAGAAGGCCTTTCAACTCCACTTGAAGTCTACAATGACCTCTACTATTTGACCTTAGAGGGCATCAGCCTCTCTGAAAGGCGGCTCGAAATTGATCCAGAAATTTTCAAAAGAACACCATCAGGCACTGGTGGAACAGTCTTTGATTCTGGGACAACATTAAGCTTCCTAGCCAAAGATGGGGCTGAGTTGGGTTTGGACATTGAGAGCCTTTTCCAAGAGTATGGCCAGAATGAGTTTTGTATGGCTTTGCAAGAGTCTCCTGTTGGCAATGACTTGAATTTTGTTGGAATTATGGCTCAGCAATTTTATAATGTTGCCTATGATCTTGCTGCAAACAAGGTTTATTTTCAGAGGATTGATTGTGAACTTCTTGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

399

Amino Acids

43.68

Weight (kDa)

4.78

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23945 AT4G30030 AT4G30040
fragaria_vesca	FvH4_4g07480
malus_domestica	MD16G1251100.v1.1 MD16G1251300.v1.1
prunus_persica	Prupe.1G077600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0399921
rosa_rugosa	Rorug04G0020200
rosa_samantha	Rh4BG094700 Rh4CG106400 Rh4DG091200
rosa_wichuraiana	Rw4G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1125
AccI	GTMKAC	2 cut(s)	357, 843
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	78, 895
AclWI	GGATC	3 cut(s)	761, 774, 902
AcoI	YGGCCR	2 cut(s)	673, 1039
AcsI	RAATTY	4 cut(s)	61, 741, 915, 1093
AdeI	CACNNNGTG	1 cut(s)	405
AfaI	GTAC	2 cut(s)	545, 776
AfiI	CCNNNNNNNGG	2 cut(s)	733, 993
AflIII	ACRYGT	2 cut(s)	195, 600
AgsI	TTSAA	8 cut(s)	202, 386, 413, 709, 828, 839, 922, 1093
AjiI	CACGTC	1 cut(s)	603
AluBI	AGCT	3 cut(s)	86, 346, 978
AluI	AGCT	3 cut(s)	86, 346, 978
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	2 cut(s)	153, 1077
AlwI	GGATC	3 cut(s)	761, 774, 902
AlwNI	CAGNNNCTG	1 cut(s)	941
AoxI	GGCC	3 cut(s)	673, 820, 1039
ApeKI	GCWGC	3 cut(s)	5, 366, 1145
ApoI	RAATTY	4 cut(s)	61, 741, 915, 1093
ArsI	GACNNNNNNTTYG	2 cut(s)	1079, 1111
AspS9I	GGNCC	2 cut(s)	579, 702
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	296, 338, 583
AvaII	GGWCC	2 cut(s)	579, 702
BalI	TGGCCA	2 cut(s)	675, 1041
BamHI	GGATCC	1 cut(s)	766
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BauI	CACGAG	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	17, 378, 1132
BccI	CCATC	7 cut(s)	101, 182, 545, 656, 797, 940, 986
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	153, 1077
BfaI	CTAG	3 cut(s)	498, 681, 983
BisI	GCNGC	4 cut(s)	6, 367, 896, 1146
BlpI	GCTNAGC	2 cut(s)	220, 1113
BlsI	GCNGC	4 cut(s)	7, 368, 897, 1147
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	2 cut(s)	579, 702
BmgBI	CACGTC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	579, 702
BmiI	GGNNCC	2 cut(s)	580, 768
BmrFI	CCNGG	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	1 cut(s)	885
BmuI	ACTGGG	1 cut(s)	4
Bpu1102I	GCTNAGC	2 cut(s)	220, 1113
BpuMI	CCSGG	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	104, 210, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	733, 993
Bse1I	ACTGG	3 cut(s)	10, 335, 946
Bse3DI	GCAATG	2 cut(s)	754, 1090
BseDI	CCNNGG	3 cut(s)	104, 210, 594
BseLI	CCNNNNNNNGG	2 cut(s)	733, 993
BseMI	GCAATG	2 cut(s)	754, 1090
BseMII	CTCAG	2 cut(s)	990, 1127
BseNI	ACTGG	3 cut(s)	10, 335, 946
BseXI	GCAGC	3 cut(s)	17, 378, 1132
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	675, 822, 1041
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	273, 567
BslFI	GGGAC	2 cut(s)	592, 979
BslI	CCNNNNNNNGG	2 cut(s)	733, 993
BsmAI	GTCTC	2 cut(s)	153, 1077
BsmFI	GGGAC	2 cut(s)	592, 979
BsnI	GGCC	3 cut(s)	675, 822, 1041
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	766, 907, 1138
Bsp1720I	GCTNAGC	2 cut(s)	220, 1113
Bsp19I	CCATGG	1 cut(s)	210
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	2 cut(s)	78, 895
BspANI	GGCC	3 cut(s)	675, 822, 1041
BspCNI	CTCAG	2 cut(s)	991, 1126
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	580, 768
BspPI	GGATC	3 cut(s)	761, 774, 902
BsrDI	GCAATG	2 cut(s)	754, 1090
BsrI	ACTGG	3 cut(s)	10, 335, 946
BssECI	CCNNGG	3 cut(s)	104, 210, 594
BssMI	GATC	3 cut(s)	766, 907, 1138
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	3 cut(s)	104, 210, 594
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	355, 952
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	6 cut(s)	220, 771, 796, 868, 999, 1113
BstDSI	CCRYGG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	769, 910, 1141
BstMAI	GTCTC	2 cut(s)	153, 1077
BstMBI	GATC	3 cut(s)	766, 907, 1138
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 221, 396
BstSCI	CCNGG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	17, 378, 1132
BstX2I	RGATCY	1 cut(s)	766
BstXI	CCANNNNNNTGG	2 cut(s)	683, 1037
BstYI	RGATCY	1 cut(s)	766
BsuRI	GGCC	3 cut(s)	675, 822, 1041
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	2 cut(s)	116, 816
BtrI	CACGTC	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	555, 939
BtuMI	TCGCGA	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	941
Cfr13I	GGNCC	2 cut(s)	579, 702
Csp6I	GTAC	2 cut(s)	544, 775
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	3 cut(s)	185, 211, 307
CviQI	GTAC	2 cut(s)	544, 775
DdeI	CTNAG	6 cut(s)	220, 771, 796, 868, 999, 1113
DpnI	GATC	3 cut(s)	768, 909, 1140
DpnII	GATC	3 cut(s)	766, 907, 1138
DraIII	CACNNNGTG	1 cut(s)	405
EaeI	YGGCCR	2 cut(s)	673, 1039
Eco130I	CCWWGG	3 cut(s)	104, 210, 594
Eco147I	AGGCCT	1 cut(s)	822
Eco47I	GGWCC	2 cut(s)	579, 702
EcoT14I	CCWWGG	3 cut(s)	104, 210, 594
ErhI	CCWWGG	3 cut(s)	104, 210, 594
FaeI	CATG	3 cut(s)	188, 214, 310
FalI	AAGNNNNNCTT	4 cut(s)	578, 610, 701, 733
FaqI	GGGAC	2 cut(s)	592, 979
FatI	CATG	3 cut(s)	184, 210, 306
FblI	GTMKAC	2 cut(s)	357, 843
Fnu4HI	GCNGC	4 cut(s)	6, 367, 896, 1146
Fsp4HI	GCNGC	4 cut(s)	6, 367, 896, 1146
FspBI	CTAG	3 cut(s)	498, 681, 983
GluI	GCNGC	4 cut(s)	6, 367, 896, 1146
HaeIII	GGCC	3 cut(s)	675, 822, 1041
HapII	CCGG	2 cut(s)	273, 567
Hin1II	CATG	3 cut(s)	188, 214, 310
HindIII	AAGCTT	1 cut(s)	976
HinfI	GANTC	3 cut(s)	137, 959, 1070
HpaII	CCGG	2 cut(s)	273, 567
HphI	GGTGA	3 cut(s)	296, 338, 583
Hpy166II	GTNNAC	4 cut(s)	358, 591, 844, 1181
Hpy188I	TCNGA	3 cut(s)	607, 889, 1167
Hpy188III	TCNNGA	4 cut(s)	134, 349, 911, 1187
Hpy8I	GTNNAC	4 cut(s)	358, 591, 844, 1181
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	5 cut(s)	401, 447, 605, 715, 812
HpyCH4III	ACNGT	2 cut(s)	355, 952
HpyCH4IV	ACGT	2 cut(s)	197, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 221, 396
HpyF3I	CTNAG	6 cut(s)	220, 771, 796, 868, 999, 1113
HpySE526I	ACGT	2 cut(s)	197, 602
Hsp92II	CATG	3 cut(s)	188, 214, 310
Kzo9I	GATC	3 cut(s)	766, 907, 1138
LmnI	GCTCC	2 cut(s)	233, 296
Lsp1109I	GCAGC	3 cut(s)	17, 378, 1132
LweI	GCATC	1 cut(s)	885
MaeI	CTAG	3 cut(s)	498, 681, 983
MaeII	ACGT	2 cut(s)	197, 602
MaeIII	GTNAC	4 cut(s)	253, 500, 509, 665
MalI	GATC	3 cut(s)	768, 909, 1140
MboI	GATC	3 cut(s)	766, 907, 1138
MfeI	CAATTG	2 cut(s)	523, 729
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	2 cut(s)	675, 1041
MluNI	TGGCCA	2 cut(s)	675, 1041
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	2 cut(s)	630, 1081
MnlI	CCTC	9 cut(s)	217, 280, 457, 526, 789, 863, 865, 893, 1161
Mox20I	TGGCCA	2 cut(s)	675, 1041
MscI	TGGCCA	2 cut(s)	675, 1041
MseI	TTAA	3 cut(s)	59, 74, 974
MslI	CAYNNNNRTG	1 cut(s)	466
Msp20I	TGGCCA	2 cut(s)	675, 1041
MspI	CCGG	2 cut(s)	273, 567
MspR9I	CCNGG	1 cut(s)	274
MunI	CAATTG	2 cut(s)	523, 729
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	14, 221, 396
NciI	CCSGG	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	766, 907, 1138
NlaIII	CATG	3 cut(s)	188, 214, 310
NlaIV	GGNNCC	2 cut(s)	580, 768
NmuCI	GTSAC	3 cut(s)	253, 500, 509
NruI	TCGCGA	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	822
PfeI	GAWTC	2 cut(s)	137, 959
PkrI	GCNGC	4 cut(s)	7, 368, 897, 1147
PleI	GAGTC	1 cut(s)	1078
PpsI	GAGTC	1 cut(s)	1078
PsiI	TTATAA	1 cut(s)	1125
PspN4I	GGNNCC	2 cut(s)	580, 768
PspPI	GGNCC	2 cut(s)	579, 702
PstNI	CAGNNNCTG	1 cut(s)	941
PsuI	RGATCY	1 cut(s)	766
RruI	TCGCGA	1 cut(s)	135
RsaI	GTAC	2 cut(s)	545, 776
RsaNI	GTAC	2 cut(s)	544, 775
RseI	CAYNNNNRTG	1 cut(s)	466
SaqAI	TTAA	3 cut(s)	59, 74, 974
SatI	GCNGC	4 cut(s)	6, 367, 896, 1146
Sau3AI	GATC	3 cut(s)	766, 907, 1138
Sau96I	GGNCC	2 cut(s)	579, 702
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	1 cut(s)	885
SinI	GGWCC	2 cut(s)	579, 702
SmiMI	CAYNNNNRTG	1 cut(s)	466
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	2 cut(s)	78, 895
SspMI	CTAG	3 cut(s)	498, 681, 983
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	3 cut(s)	104, 210, 594
TaaI	ACNGT	2 cut(s)	355, 952
TaiI	ACGT	2 cut(s)	200, 605
TaqI	TCGA	2 cut(s)	96, 900
TaqII	GACCGA	1 cut(s)	596
TauI	GCSGC	1 cut(s)	898
TfiI	GAWTC	2 cut(s)	137, 959
Tru1I	TTAA	3 cut(s)	59, 74, 974
Tru9I	TTAA	3 cut(s)	59, 74, 974
TscAI	CASTG	2 cut(s)	562, 946
TseFI	GTSAC	3 cut(s)	253, 500, 509
TseI	GCWGC	3 cut(s)	5, 366, 1145
Tsp45I	GTSAC	3 cut(s)	253, 500, 509
TspDTI	ATGAA	2 cut(s)	119, 295
TspRI	CASTG	2 cut(s)	562, 946
VpaK11BI	GGWCC	2 cut(s)	579, 702
XapI	RAATTY	4 cut(s)	61, 741, 915, 1093
XmiI	GTMKAC	2 cut(s)	357, 843
XspI	CTAG	3 cut(s)	498, 681, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.