FvH4_4g07480

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017135
Physical Location & Seq
Reverse (-)
6850708 .. 6851984
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07480.t1

Sequence Viewer

Length: 1110 bp
ATGACCTTCCAGTACGTAGCAATGGCAGCTGCACTTGCGAGGTTCTCTCTACTCACTTTCTTCTTAGCCTTAAACACATTATACGTAACAGCCAACCCTGCCACAATCTCCACCATCACAAAACCAAAGCGTTTTGTCACAAAACTCATTCACCACGATTCCGTTTTGTCTCCTTACTACAACCCTAATGCAAACATTAGAGATCTTGTTTCACGCTCGGTGAAAAGCTCTGCAGCACGCTTGGCATACCTAAAAGCAAAGAGCACCAATGCTTTCGTGGTGGACGATACGCGTGCCCGTGTTGTTCCGGAGAACCCTGCAGAAGAGTTCATGGCAAATTTCTCATTTGGGGAGCCTCCAGTTCCACAGCTTTTAGCAATGGATACAGGCAGCGACTTATTGTGGATTCAATGCCTGCCTTGCACCAAGTGTTTTAAACAATCCAGTCCAATTTTTGATCCTTCCAAATCCTCCACATACAAAATATTGCCATGTATATCTGCCGATTGTATTCTTTCCAATCCTGCTGAGAAATGTAACTTCTTAAACCAATGCAGATTCAATCAAACGTACCTTGATGGCACGTCGGCTGAAGGACTTATCGCAACCGAAAAGCTCACCTTTGTGACATCAAACGAAGGGCCTAGCCCTGTCTACAATGCCGTTTTCGGCTGTGGACATATCAATGCTGCTGCCGACGAAGGACAAATAAGTGGAGTACTTGGTCTTGGCCCTTCACAAATATCTTTGTCCACCAAGATAGGCTACAAATTTTCTTATTGCAGTGGAAGCATAAGAGACCCTAACTACCCTCATAACCAATTGATCTTGGGTGAGGGTACAAAGACAGAAGGTGCAGCAACCCCTCTTGAAATCGTTGATGAACTTTACCATCTAACCCTAGAGGGCATCAGTCTCGGCCAGTCCCGCCTCCAAATTGATCCAAAGGTATTCAGCAGAGTTGGAAATGCTGGTGGAACCGTCATTGACTCCGGAACAACTATAAGCTACTTGGTTAAAGCAGCATACGGTGTACTGAGTGCTGAAACGCAAAAAATATTGAATGGAAAATTAGGGTTCCCACAGCTCTTTGCTACAAAGGAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

370

Amino Acids

39.92

Weight (kDa)

7.51

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 110 - 277 3.7e-39 Xylanase inhibitor N-terminal
TAXi_C PF14541 297 - 357 9.6e-09 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23945 AT4G30030 AT4G30040
fragaria_vesca FvH4_4g07480
malus_domestica MD16G1251100.v1.1 MD16G1251300.v1.1
prunus_persica Prupe.1G077600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399921
rosa_rugosa Rorug04G0020200
rosa_samantha Rh4BG094700 Rh4CG106400 Rh4DG091200
rosa_wichuraiana Rw4G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 654
AccII CGCG 1 cut(s) 292
AccIII TCCGGA 2 cut(s) 307, 992
AciI CCGC 1 cut(s) 928
AclWI GGATC 2 cut(s) 452, 935
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 2 cut(s) 337, 770
AcuI CTGAAG 1 cut(s) 612
AdeI CACNNNGTG 1 cut(s) 429
AfaI GTAC 5 cut(s) 14, 572, 720, 841, 1035
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 4 cut(s) 410, 562, 872, 1063
AjiI CACGTC 1 cut(s) 585
AleI CACNNNNGTG 1 cut(s) 623
AluBI AGCT 6 cut(s) 29, 228, 370, 616, 1008, 1087
AluI AGCT 6 cut(s) 29, 228, 370, 616, 1008, 1087
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 3 cut(s) 174, 792, 920
AlwI GGATC 2 cut(s) 452, 935
Aor13HI TCCGGA 2 cut(s) 307, 992
AoxI GGCC 3 cut(s) 641, 730, 919
ApeKI GCWGC 8 cut(s) 26, 29, 233, 390, 689, 692, 857, 1022
ApoI RAATTY 2 cut(s) 337, 770
AspS9I GGNCC 2 cut(s) 641, 731
AsuHPI GGTGA 4 cut(s) 143, 232, 610, 845
BaeGI GKGCMC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 8 cut(s) 16, 38, 245, 402, 676, 679, 869, 1034
BccI CCATC 3 cut(s) 122, 572, 900
BceAI ACGGC 1 cut(s) 647
BcgI CGANNNNNNTGC 4 cut(s) 275, 309, 898, 932
BciVI GTATCC 1 cut(s) 376
BcoDI GTCTC 3 cut(s) 174, 792, 920
BfaI CTAG 2 cut(s) 645, 902
BfmI CTRYAG 2 cut(s) 231, 318
BfuI GTATCC 1 cut(s) 376
BglII AGATCT 1 cut(s) 202
BisI GCNGC 8 cut(s) 27, 30, 234, 391, 690, 693, 858, 1023
BlsI GCNGC 8 cut(s) 28, 31, 235, 392, 691, 694, 859, 1024
BmcAI AGTACT 1 cut(s) 720
BmgBI CACGTC 1 cut(s) 585
BmgT120I GGNCC 2 cut(s) 641, 731
BmiI GGNNCC 3 cut(s) 354, 979, 1079
BmsI GCATC 1 cut(s) 918
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpmI CTGGAG 1 cut(s) 342
BsaAI YACGTR 2 cut(s) 16, 85
BsaI GGTCTC 1 cut(s) 792
BsaWI WCCGGW 2 cut(s) 307, 992
Bse1I ACTGG 4 cut(s) 10, 359, 444, 922
Bse3DI GCAATG 2 cut(s) 27, 384
BseAI TCCGGA 2 cut(s) 307, 992
BseMI GCAATG 2 cut(s) 27, 384
BseMII CTCAG 2 cut(s) 519, 1028
BseNI ACTGG 4 cut(s) 10, 359, 444, 922
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 8 cut(s) 16, 38, 245, 402, 676, 679, 869, 1034
BsgI GTGCAG 2 cut(s) 15, 876
Bsh1236I CGCG 1 cut(s) 292
BshFI GGCC 3 cut(s) 643, 732, 921
BsiHKAI GWGCWC 1 cut(s) 266
BsiSI CCGG 2 cut(s) 308, 993
BslFI GGGAC 1 cut(s) 910
BsmAI GTCTC 3 cut(s) 174, 792, 920
BsmFI GGGAC 1 cut(s) 910
BsnI GGCC 3 cut(s) 643, 732, 921
Bso31I GGTCTC 1 cut(s) 792
Bsp1286I GDGCHC 2 cut(s) 266, 298
Bsp13I TCCGGA 2 cut(s) 307, 992
Bsp143I GATC 4 cut(s) 202, 457, 825, 940
BspACI CCGC 1 cut(s) 928
BspANI GGCC 3 cut(s) 643, 732, 921
BspCNI CTCAG 2 cut(s) 520, 1029
BspEI TCCGGA 2 cut(s) 307, 992
BspFNI CGCG 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 354, 979, 1079
BspMAI CTGCAG 2 cut(s) 235, 322
BspPI GGATC 2 cut(s) 452, 935
BspTNI GGTCTC 1 cut(s) 792
BsrDI GCAATG 2 cut(s) 27, 384
BsrI ACTGG 4 cut(s) 10, 359, 444, 922
BssMI GATC 4 cut(s) 202, 457, 825, 940
Bst4CI ACNGT 3 cut(s) 982, 1031, 1107
Bst6I CTCTTC 1 cut(s) 318
BstBAI YACGTR 2 cut(s) 16, 85
BstC8I GCNNGC 3 cut(s) 238, 294, 416
BstDEI CTNAG 3 cut(s) 64, 528, 1037
BstFNI CGCG 1 cut(s) 292
BstKTI GATC 4 cut(s) 205, 460, 828, 943
BstMAI GTCTC 3 cut(s) 174, 792, 920
BstMBI GATC 4 cut(s) 202, 457, 825, 940
BstMWI GCNNNNNNNGC 7 cut(s) 26, 35, 98, 242, 420, 789, 927
BstSFI CTRYAG 2 cut(s) 231, 318
BstSLI GKGCMC 1 cut(s) 298
BstSNI TACGTA 2 cut(s) 16, 85
BstUI CGCG 1 cut(s) 292
BstV1I GCAGC 8 cut(s) 16, 38, 245, 402, 676, 679, 869, 1034
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 3 cut(s) 643, 732, 921
BtrI CACGTC 1 cut(s) 585
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 1 cut(s) 790
Cac8I GCNNGC 3 cut(s) 238, 294, 416
Cfr13I GGNCC 2 cut(s) 641, 731
Csp6I GTAC 5 cut(s) 13, 571, 719, 840, 1034
CviAII CATG 2 cut(s) 331, 492
CviQI GTAC 5 cut(s) 13, 571, 719, 840, 1034
DdeI CTNAG 3 cut(s) 64, 528, 1037
DpnI GATC 4 cut(s) 204, 459, 827, 942
DpnII GATC 4 cut(s) 202, 457, 825, 940
DraI TTTAAA 1 cut(s) 436
DraIII CACNNNGTG 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 919
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco105I TACGTA 2 cut(s) 16, 85
Eco31I GGTCTC 1 cut(s) 792
Eco57I CTGAAG 1 cut(s) 612
EcoO109I RGGNCCY 1 cut(s) 641
FaeI CATG 2 cut(s) 334, 495
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 1 cut(s) 910
FatI CATG 2 cut(s) 330, 491
FauI CCCGC 1 cut(s) 935
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 8 cut(s) 27, 30, 234, 391, 690, 693, 858, 1023
Fsp4HI GCNGC 8 cut(s) 27, 30, 234, 391, 690, 693, 858, 1023
FspBI CTAG 2 cut(s) 645, 902
GluI GCNGC 8 cut(s) 27, 30, 234, 391, 690, 693, 858, 1023
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 3 cut(s) 643, 732, 921
HapII CCGG 2 cut(s) 308, 993
Hin1II CATG 2 cut(s) 334, 495
HinfI GANTC 4 cut(s) 158, 406, 558, 989
HpaII CCGG 2 cut(s) 308, 993
HphI GGTGA 4 cut(s) 143, 232, 610, 845
Hpy166II GTNNAC 5 cut(s) 283, 655, 677, 753, 1034
Hpy188III TCNNGA 3 cut(s) 308, 869, 993
Hpy8I GTNNAC 5 cut(s) 283, 655, 677, 753, 1034
Hpy99I CGWCG 2 cut(s) 589, 701
HpyAV CCTTC 7 cut(s) 16, 471, 587, 632, 695, 744, 845
HpyCH4III ACNGT 3 cut(s) 982, 1031, 1107
HpyCH4IV ACGT 4 cut(s) 15, 84, 569, 584
HpyCH4V TGCA 8 cut(s) 32, 191, 233, 320, 423, 555, 783, 857
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 35, 98, 242, 420, 789, 927
HpyF3I CTNAG 3 cut(s) 64, 528, 1037
HpySE526I ACGT 4 cut(s) 15, 84, 569, 584
Hsp92II CATG 2 cut(s) 334, 495
Kpn2I TCCGGA 2 cut(s) 307, 992
Kzo9I GATC 4 cut(s) 202, 457, 825, 940
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 8 cut(s) 16, 38, 245, 402, 676, 679, 869, 1034
LweI GCATC 1 cut(s) 918
MaeI CTAG 2 cut(s) 645, 902
MaeII ACGT 4 cut(s) 15, 84, 569, 584
MaeIII GTNAC 4 cut(s) 85, 136, 536, 625
MalI GATC 4 cut(s) 204, 459, 827, 942
MboI GATC 4 cut(s) 202, 457, 825, 940
MboII GAAGA 2 cut(s) 52, 335
MfeI CAATTG 1 cut(s) 821
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 266, 298
MluCI AATT 6 cut(s) 337, 450, 770, 821, 936, 1070
MluI ACGCGT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 983
MmeI TCCRAC 1 cut(s) 943
MnlI CCTC 8 cut(s) 33, 366, 481, 822, 829, 876, 898, 941
MroI TCCGGA 2 cut(s) 307, 992
MseI TTAA 4 cut(s) 71, 435, 545, 1017
MslI CAYNNNNRTG 2 cut(s) 623, 684
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 308, 993
MunI CAATTG 1 cut(s) 821
MvnI CGCG 1 cut(s) 292
MwoI GCNNNNNNNGC 7 cut(s) 26, 35, 98, 242, 420, 789, 927
NdeII GATC 4 cut(s) 202, 457, 825, 940
NlaIII CATG 2 cut(s) 334, 495
NlaIV GGNNCC 3 cut(s) 354, 979, 1079
NmeAIII GCCGAG 1 cut(s) 897
NmuCI GTSAC 2 cut(s) 136, 625
OliI CACNNNNGTG 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 3 cut(s) 158, 406, 558
PkrI GCNGC 8 cut(s) 28, 31, 235, 392, 691, 694, 859, 1024
PleI GAGTC 1 cut(s) 983
PpsI GAGTC 1 cut(s) 983
Ppu21I YACGTR 2 cut(s) 16, 85
PspN4I GGNNCC 3 cut(s) 354, 979, 1079
PspPI GGNCC 2 cut(s) 641, 731
PstI CTGCAG 2 cut(s) 235, 322
PsuI RGATCY 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 5 cut(s) 14, 572, 720, 841, 1035
RsaNI GTAC 5 cut(s) 13, 571, 719, 840, 1034
RseI CAYNNNNRTG 2 cut(s) 623, 684
SaqAI TTAA 4 cut(s) 71, 435, 545, 1017
SatI GCNGC 8 cut(s) 27, 30, 234, 391, 690, 693, 858, 1023
Sau3AI GATC 4 cut(s) 202, 457, 825, 940
Sau96I GGNCC 2 cut(s) 641, 731
ScaI AGTACT 1 cut(s) 720
SchI GAGTC 1 cut(s) 983
SduI GDGCHC 2 cut(s) 266, 298
SfaNI GCATC 1 cut(s) 918
SfcI CTRYAG 2 cut(s) 231, 318
SmiMI CAYNNNNRTG 2 cut(s) 623, 684
SnaBI TACGTA 2 cut(s) 16, 85
Sse9I AATT 6 cut(s) 337, 450, 770, 821, 936, 1070
SsiI CCGC 1 cut(s) 928
SspI AATATT 2 cut(s) 486, 1059
SspMI CTAG 2 cut(s) 645, 902
TaaI ACNGT 3 cut(s) 982, 1031, 1107
TaiI ACGT 4 cut(s) 18, 87, 572, 587
TasI AATT 6 cut(s) 337, 450, 770, 821, 936, 1070
TatI WGTACW 2 cut(s) 718, 1033
TfiI GAWTC 3 cut(s) 158, 406, 558
Tru1I TTAA 4 cut(s) 71, 435, 545, 1017
Tru9I TTAA 4 cut(s) 71, 435, 545, 1017
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 2 cut(s) 136, 625
TseI GCWGC 8 cut(s) 26, 29, 233, 390, 689, 692, 857, 1022
Tsp45I GTSAC 2 cut(s) 136, 625
TspDTI ATGAA 2 cut(s) 319, 897
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 790
XapI RAATTY 2 cut(s) 337, 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 2 cut(s) 645, 902
ZrmI AGTACT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.