MD16G1251100.v1.1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0017135
Physical Location & Seq
Reverse (-)
28096429 .. 28096875
447 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1251100.v1.1.491

Sequence Viewer

Length: 447 bp
ATGGGGTCAAAATTATCTTATTGCATCGGTAGCATAAGGGATCCCAACTACCCTCATAACAAATTAGTCTTAGGCGATGGTGCAAAGATAGAAGGCACTTCAACTCCACTAGAAGTCTACAATGAACTTTACTATCTAACCCTAGAGAGCATCAGCCTCGCGGAAAGACGGCTTGAAATTGATCCAGAAATCTTCAAGAGAACAGAATCAGGCTCGGGTGGAACAGTCATCGATTCCGAAACAATAGTAACCTTCTTAGCCACAAGTGCACACGTTGTGCTTAGAGATAAAGTGCAAAAGTTGCTTGATGGAAGATTGGAAAAAGTGGAAAAGCCCGGTGTTCCTTCAGGTTTGTGCTACAAGGGGAAAATAAGGCAAGATTTAATAGGGTTTCCAGATGTTGTGTTGAACTTTGCAGGTGGGGATGAGTTAGGGTTAGACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

149

Amino Acids

16.19

Weight (kDa)

5.07

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 44 - 145 1.1e-15 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23945 AT4G30030 AT4G30040
fragaria_vesca FvH4_4g07480
malus_domestica MD16G1251100.v1.1 MD16G1251300.v1.1
prunus_persica Prupe.1G077600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399921
rosa_rugosa Rorug04G0020200
rosa_samantha Rh4BG094700 Rh4CG106400 Rh4DG091200
rosa_wichuraiana Rw4G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 161
AclWI GGATC 3 cut(s) 35, 48, 176
AcuI CTGAAG 1 cut(s) 330
AdeI CACNNNGTG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 4 cut(s) 102, 176, 196, 409
Alw21I GWGCWC 1 cut(s) 271
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 3 cut(s) 35, 48, 176
Ama87I CYCGRG 1 cut(s) 214
ApaLI GTGCAC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 336
AvaI CYCGRG 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 271
BccI CCATC 2 cut(s) 71, 302
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcnI CCSGG 1 cut(s) 336
BfaI CTAG 2 cut(s) 110, 143
BfuAI ACCTGC 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 33, 159
BpuMI CCSGG 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
BseCI ATCGAT 1 cut(s) 231
BseGI GGATG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 40, 181
BspACI CCGC 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 3 cut(s) 35, 48, 176
BssMI GATC 2 cut(s) 40, 181
Bst4CI ACNGT 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 70, 256, 281
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 2 cut(s) 43, 184
BstMBI GATC 2 cut(s) 40, 181
BstMWI GCNNNNNNNGC 3 cut(s) 30, 266, 301
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Bsu15I ATCGAT 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 430
BveI ACCTGC 1 cut(s) 407
ClaI ATCGAT 1 cut(s) 231
CviJI RGCY 5 cut(s) 156, 172, 213, 260, 334
CviKI_1 RGCY 5 cut(s) 156, 172, 213, 260, 334
DdeI CTNAG 3 cut(s) 70, 256, 281
DpnI GATC 2 cut(s) 42, 183
DpnII GATC 2 cut(s) 40, 181
DraIII CACNNNGTG 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 214
FaiI YATR 4 cut(s) 35, 57, 443, 445
FblI GTMKAC 1 cut(s) 117
FokI GGATG 1 cut(s) 437
FspBI CTAG 2 cut(s) 110, 143
HapII CCGG 1 cut(s) 336
HinfI GANTC 2 cut(s) 206, 233
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 2 cut(s) 118, 269
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 3 cut(s) 185, 196, 395
Hpy8I GTNNAC 2 cut(s) 118, 269
HpyAV CCTTC 3 cut(s) 86, 262, 354
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 5 cut(s) 24, 83, 269, 295, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 266, 301
HpyF3I CTNAG 3 cut(s) 70, 256, 281
HpySE526I ACGT 1 cut(s) 273
Kzo9I GATC 2 cut(s) 40, 181
LpnPI CCDG 6 cut(s) 195, 198, 333, 349, 402, 408
LweI GCATC 2 cut(s) 33, 159
MaeI CTAG 2 cut(s) 110, 143
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 42, 183
MboI GATC 2 cut(s) 40, 181
MboII GAAGA 2 cut(s) 184, 324
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 3 cut(s) 11, 62, 177
MnlI CCTC 2 cut(s) 63, 167
MseI TTAA 1 cut(s) 383
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 3 cut(s) 30, 266, 301
NciI CCSGG 1 cut(s) 336
NdeII GATC 2 cut(s) 40, 181
NlaIV GGNNCC 1 cut(s) 42
PaqCI CACCTGC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 206, 233
PspN4I GGNNCC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 40
SaqAI TTAA 1 cut(s) 383
Sau3AI GATC 2 cut(s) 40, 181
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 271
SetI ASST 4 cut(s) 254, 276, 352, 421
SfaNI GCATC 2 cut(s) 33, 159
Sse9I AATT 3 cut(s) 11, 62, 177
SsiI CCGC 1 cut(s) 161
SspMI CTAG 2 cut(s) 110, 143
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 231
TasI AATT 3 cut(s) 11, 62, 177
TfiI GAWTC 2 cut(s) 206, 233
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 138
VneI GTGCAC 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 2 cut(s) 110, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.