AT2G24270

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
10326918 .. 10330048
3131 bp
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UTR
Exon/CDS
Intron
AT2G24270.4

Sequence Viewer

Length: 1491 bp
ATGGCCGGGACTGGATTGTTTGCTGAGATTCTTGATGGAGAAGTATACAAATACTACGCTGATGGTGAGTGGAAAACTTCTTCCTCAGGTAAGAGTGTTGCCATCATGAACCCGGCCACGAGGAAGACACAGTACAAGGTTCAAGCATGCACGCAAGAAGAAGTGAACGCGGTGATGGAACTGGCGAAATCAGCTCAGAAATCGTGGGCGAAAACTCCTCTTTGGAAAAGAGCTGAGCTTCTTCACAAGGCTGCAGCAATCCTTAAGGACAACAAAGCTCCCATGGCTGAGTCTCTTGTTAAAGAAATCGCTAAACCCGCCAAAGATTCTGTTACTGAGGTTGTGAGGTCTGGAGATTTGATCTCTTATTGTGCTGAAGAAGGTGTTAGGATCTTAGGTGAAGGGAAGTTTCTTCTCTCCGATAGCTTCCCCGGTAATGACCGTACTAAGTACTGCCTCACTTCCAAGATTCCACTCGGTGTGGTTTTGGCTATTCCTCCATTCAATTATCCAGTTAATCTCGCTGTATCGAAGATCGCTCCTGCTTTGATCGCCGGAAACTCCCTTGTCCTCAAACCTCCAACTCAAGGAGCTGTTTCTTGCCTTCACATGGTACATTGCTTTCACTTAGCCGGTTTCCCAAAAGGTCTTATCAGCTGCATCACCGGAAAAGGATCTGAGATCGGCGATTTCCTCACTATGCACCCTGCTGTTAACTGCATTAGTTTCACGGGTGGTGATACCGGAATCTCAATCTCAAAGAAAGCTGGTATGATCCCTCTTCAAATGGAACTTGGAGGTAAAGATGCATGCATTGTTCTAGATGATGCTGATCTTGATTTAGTTGCTTCCAATATCATCAAAGGAGGATTCTCTTACAGCGGGCAGAGATGCACTGCGGTTAAGGTAGTCCTAGTGATGGAATCAGTAGCGGATGAGCTTGTTGAGAAAGTGAAAGCTAAAGTGGCCAAACTCACGGTGGGACCGCCCGAAGAGAACTCCGATATCACGGCAGTGGTGTCGGAATCTTCAGCTAATTTCATTGAAGGATTGGTGATGGATGCTAAGGAGAAAGGAGCAACGTTTTGTCAAGAGTATAAAAGAGAGGGTAACTTGATTTGGCCGTTGCTTTTGGATAATGTTAGACCGGACATGAGGATCGCGTGGGAGGAACCATTCGGTCCTGTTGTGCCGGTCTTGAGGATCAATTCTGTTGAAGAAGGGATTAATCATTGCAATGCAAGCAACTTTGGCCTTCAGGGATGTGTATTCACTAAAGACATCAACAAGGCAATACTGATCAGTGATGCAATGGAGACAGGAACCGTTCAGATCAACTCTGCGCCAGCTCGTGGACCGGACCACTTCCCTTTCCAGGGACTTAAGGACAGTGGAATAGGGTCACAAGGTGTGACAAATAGCATCAATTTGATGACTAAAGTGAAGACCACTGTCATTAACTTGCCTACACCTTCTTACTCTATGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

496

Amino Acids

53.06

Weight (kDa)

6.23

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 24 - 483 7.6e-143 Aldehyde dehydrogenase family
LuxC PF05893 53 - 445 8.2e-06 Acyl-CoA reductase (LuxC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1352
AccI GTMKAC 1 cut(s) 45
AccII CGCG 2 cut(s) 170, 1163
AciI CCGC 6 cut(s) 170, 318, 882, 899, 932, 986
AclI AACGTT 1 cut(s) 1082
AclWI GGATC 5 cut(s) 398, 682, 769, 1166, 1211
AcoI YGGCCR 4 cut(s) 3, 114, 966, 1121
AcuI CTGAAG 3 cut(s) 396, 1014, 1241
AdeI CACNNNGTG 2 cut(s) 479, 1409
AfaI GTAC 4 cut(s) 134, 445, 452, 615
AfiI CCNNNNNNNGG 6 cut(s) 587, 610, 919, 1352, 1375, 1376
AflII CTTAAG 2 cut(s) 263, 1382
AgsI TTSAA 5 cut(s) 143, 505, 785, 1046, 1217
AjnI CCWGG 1 cut(s) 1374
AleI CACNNNNGTG 1 cut(s) 1013
Alw26I GTCTC 2 cut(s) 297, 1310
AlwI GGATC 5 cut(s) 398, 682, 769, 1166, 1211
AoxI GGCC 5 cut(s) 3, 114, 966, 1121, 1252
ApeKI GCWGC 3 cut(s) 251, 254, 657
AseI ATTAAT 1 cut(s) 1227
AspLEI GCGC 1 cut(s) 1345
AspS9I GGNCC 4 cut(s) 983, 1181, 1355, 1360
AsuC2I CCSGG 3 cut(s) 7, 113, 432
AsuHPI GGTGA 6 cut(s) 77, 184, 410, 655, 749, 1066
AvaII GGWCC 4 cut(s) 983, 1181, 1355, 1360
AxyI CCTNAGG 1 cut(s) 85
BalI TGGCCA 1 cut(s) 968
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BauI CACGAG 2 cut(s) 118, 1350
BbsI GAAGAC 2 cut(s) 131, 1451
BbvI GCAGC 3 cut(s) 238, 266, 644
BccI CCATC 6 cut(s) 29, 56, 110, 169, 913, 1051
BceAI ACGGC 2 cut(s) 1026, 1108
BcgI CGANNNNNNTGC 2 cut(s) 1002, 1036
BciT130I CCWGG 1 cut(s) 1376
BclI TGATCA 1 cut(s) 1299
BcnI CCSGG 3 cut(s) 7, 113, 432
BcoDI GTCTC 2 cut(s) 297, 1310
BfaI CTAG 2 cut(s) 821, 914
BfmI CTRYAG 1 cut(s) 252
BfrI CTTAAG 2 cut(s) 263, 1382
BisI GCNGC 3 cut(s) 252, 255, 658
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 3 cut(s) 253, 256, 659
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 4 cut(s) 7, 113, 432, 1376
Bme18I GGWCC 4 cut(s) 983, 1181, 1355, 1360
BmgT120I GGNCC 4 cut(s) 983, 1181, 1355, 1360
BmiI GGNNCC 3 cut(s) 984, 1173, 1324
BmrFI CCNGG 4 cut(s) 7, 113, 432, 1376
BmsI GCATC 7 cut(s) 669, 796, 817, 881, 1051, 1297, 1431
BoxI GACNNNNGTC 1 cut(s) 1451
BpiI GAAGAC 2 cut(s) 131, 1451
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 1065
Bpu1102I GCTNAGC 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 570, 1219
BpuMI CCSGG 3 cut(s) 7, 113, 432
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 3 cut(s) 282, 430, 1375
BsaWI WCCGGW 4 cut(s) 665, 743, 1147, 1357
Bsc4I CCNNNNNNNGG 6 cut(s) 587, 610, 919, 1352, 1375, 1376
Bse118I RCCGGY 2 cut(s) 632, 1192
Bse1I ACTGG 3 cut(s) 16, 186, 512
Bse21I CCTNAGG 1 cut(s) 85
Bse3DI GCAATG 4 cut(s) 616, 1231, 1243, 1317
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 1 cut(s) 1376
BseDI CCNNGG 3 cut(s) 282, 430, 1375
BseGI GGATG 3 cut(s) 940, 1066, 1268
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 6 cut(s) 587, 610, 919, 1352, 1375, 1376
BseMI GCAATG 4 cut(s) 616, 1231, 1243, 1317
BseMII CTCAG 7 cut(s) 15, 99, 209, 225, 279, 327, 669
BseNI ACTGG 3 cut(s) 16, 186, 512
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 3 cut(s) 238, 266, 644
Bsh1236I CGCG 2 cut(s) 170, 1163
BshFI GGCC 5 cut(s) 5, 116, 968, 1123, 1254
BslFI GGGAC 3 cut(s) 22, 996, 1392
BslI CCNNNNNNNGG 6 cut(s) 587, 610, 919, 1352, 1375, 1376
BsmAI GTCTC 2 cut(s) 297, 1310
BsmFI GGGAC 3 cut(s) 22, 996, 1392
BsnI GGCC 5 cut(s) 5, 116, 968, 1123, 1254
Bsp1720I GCTNAGC 1 cut(s) 234
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 6 cut(s) 170, 318, 882, 899, 932, 986
BspANI GGCC 5 cut(s) 5, 116, 968, 1123, 1254
BspCNI CTCAG 7 cut(s) 16, 98, 208, 226, 280, 328, 670
BspFNI CGCG 2 cut(s) 170, 1163
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 3 cut(s) 984, 1173, 1324
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 5 cut(s) 398, 682, 769, 1166, 1211
BspTI CTTAAG 2 cut(s) 263, 1382
BsrDI GCAATG 4 cut(s) 616, 1231, 1243, 1317
BsrFI RCCGGY 2 cut(s) 632, 1192
BsrI ACTGG 3 cut(s) 16, 186, 512
BssAI RCCGGY 2 cut(s) 632, 1192
BssECI CCNNGG 3 cut(s) 282, 430, 1375
BssNAI GTATAC 1 cut(s) 46
BssSI CACGAG 2 cut(s) 118, 1350
BssT1I CCWWGG 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 46
Bst2BI CACGAG 2 cut(s) 118, 1350
Bst2UI CCWGG 1 cut(s) 1376
Bst4CI ACNGT 6 cut(s) 132, 443, 979, 1327, 1391, 1453
Bst6I CTCTTC 2 cut(s) 786, 987
BstAFI CTTAAG 2 cut(s) 263, 1382
BstC8I GCNNGC 6 cut(s) 148, 152, 811, 884, 1243, 1347
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 3 cut(s) 940, 1066, 1268
BstFNI CGCG 2 cut(s) 170, 1163
BstHHI GCGC 1 cut(s) 1345
BstMAI GTCTC 2 cut(s) 297, 1310
BstMWI GCNNNNNNNGC 7 cut(s) 191, 284, 317, 551, 965, 1242, 1251
BstNI CCWGG 1 cut(s) 1376
BstNSI RCATGY 2 cut(s) 150, 813
BstPAI GACNNNNGTC 1 cut(s) 1451
BstSCI CCNGG 4 cut(s) 5, 111, 430, 1374
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 2 cut(s) 170, 1163
BstV1I GCAGC 3 cut(s) 238, 266, 644
BstV2I GAAGAC 2 cut(s) 131, 1451
BstX2I RGATCY 2 cut(s) 390, 674
BstYI RGATCY 2 cut(s) 390, 674
BstZ17I GTATAC 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 85
BsuRI GGCC 5 cut(s) 5, 116, 968, 1123, 1254
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 940, 1066, 1268
BtsI GCAGTG 2 cut(s) 894, 1020
BtsIMutI CAGTG 5 cut(s) 894, 1020, 1309, 1396, 1449
Cac8I GCNNGC 6 cut(s) 148, 152, 811, 884, 1243, 1347
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 1345
Cfr10I RCCGGY 2 cut(s) 632, 1192
Cfr13I GGNCC 4 cut(s) 983, 1181, 1355, 1360
Csp6I GTAC 4 cut(s) 133, 444, 451, 614
CviAII CATG 6 cut(s) 106, 147, 283, 610, 810, 1153
CviQI GTAC 4 cut(s) 133, 444, 451, 614
DraIII CACNNNGTG 2 cut(s) 479, 1409
EaeI YGGCCR 4 cut(s) 3, 114, 966, 1121
Eam1104I CTCTTC 2 cut(s) 786, 987
EarI CTCTTC 2 cut(s) 786, 987
Eco130I CCWWGG 1 cut(s) 282
Eco32I GATATC 1 cut(s) 1006
Eco47I GGWCC 4 cut(s) 983, 1181, 1355, 1360
Eco57I CTGAAG 3 cut(s) 396, 1014, 1241
Eco81I CCTNAGG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 1374
EcoRV GATATC 1 cut(s) 1006
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 2 cut(s) 811, 815
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 6 cut(s) 109, 150, 286, 613, 813, 1156
FaqI GGGAC 3 cut(s) 22, 996, 1392
FatI CATG 6 cut(s) 105, 146, 282, 609, 809, 1152
FauI CCCGC 2 cut(s) 325, 875
FbaI TGATCA 1 cut(s) 1299
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 252, 255, 658
FokI GGATG 3 cut(s) 947, 1073, 1275
Fsp4HI GCNGC 3 cut(s) 252, 255, 658
FspBI CTAG 2 cut(s) 821, 914
GlaI GCGC 1 cut(s) 1344
GluI GCNGC 3 cut(s) 252, 255, 658
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 5 cut(s) 5, 116, 968, 1123, 1254
HhaI GCGC 1 cut(s) 1345
Hin1II CATG 6 cut(s) 109, 150, 286, 613, 813, 1156
Hin6I GCGC 1 cut(s) 1343
HinP1I GCGC 1 cut(s) 1343
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 8 cut(s) 28, 290, 326, 469, 747, 870, 923, 1025
HpaI GTTAAC 1 cut(s) 715
HphI GGTGA 6 cut(s) 77, 184, 410, 655, 749, 1066
Hpy166II GTNNAC 4 cut(s) 46, 166, 715, 1355
Hpy188I TCNGA 6 cut(s) 198, 421, 679, 1003, 1024, 1332
Hpy188III TCNNGA 7 cut(s) 32, 106, 351, 821, 836, 1091, 1198
Hpy8I GTNNAC 4 cut(s) 46, 166, 715, 1355
HpyAV CCTTC 7 cut(s) 374, 395, 614, 1040, 1214, 1265, 1482
HpyCH4III ACNGT 6 cut(s) 132, 443, 979, 1327, 1391, 1453
HpyCH4IV ACGT 1 cut(s) 1082
HpyF10VI GCNNNNNNNGC 7 cut(s) 191, 284, 317, 551, 965, 1242, 1251
HpySE526I ACGT 1 cut(s) 1082
Hsp92II CATG 6 cut(s) 109, 150, 286, 613, 813, 1156
HspAI GCGC 1 cut(s) 1343
Ksp22I TGATCA 1 cut(s) 1299
KspAI GTTAAC 1 cut(s) 715
LmnI GCTCC 4 cut(s) 283, 544, 590, 1076
Lsp1109I GCAGC 3 cut(s) 238, 266, 644
LweI GCATC 7 cut(s) 669, 796, 817, 881, 1051, 1297, 1431
MaeI CTAG 2 cut(s) 821, 914
MaeII ACGT 1 cut(s) 1082
MaeIII GTNAC 4 cut(s) 331, 1109, 1401, 1411
MflI RGATCY 2 cut(s) 390, 674
MlsI TGGCCA 1 cut(s) 968
MluCI AATT 4 cut(s) 505, 1036, 1207, 1426
MluNI TGGCCA 1 cut(s) 968
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 605, 1002
Mox20I TGGCCA 1 cut(s) 968
Mph1103I ATGCAT 2 cut(s) 811, 815
MscI TGGCCA 1 cut(s) 968
MseI TTAA 8 cut(s) 264, 300, 516, 714, 903, 1227, 1383, 1458
MslI CAYNNNNRTG 2 cut(s) 1013, 1236
Msp20I TGGCCA 1 cut(s) 968
MspA1I CMGCKG 2 cut(s) 657, 882
MspCI CTTAAG 2 cut(s) 263, 1382
MspR9I CCNGG 4 cut(s) 7, 113, 432, 1376
MvaI CCWGG 1 cut(s) 1376
MvnI CGCG 2 cut(s) 170, 1163
MwoI GCNNNNNNNGC 7 cut(s) 191, 284, 317, 551, 965, 1242, 1251
NciI CCSGG 3 cut(s) 7, 113, 432
NcoI CCATGG 1 cut(s) 282
NlaIII CATG 6 cut(s) 109, 150, 286, 613, 813, 1156
NlaIV GGNNCC 3 cut(s) 984, 1173, 1324
NmuCI GTSAC 2 cut(s) 1401, 1411
NsiI ATGCAT 2 cut(s) 811, 815
NspI RCATGY 2 cut(s) 150, 813
OliI CACNNNNGTG 1 cut(s) 1013
PaeI GCATGC 2 cut(s) 150, 813
PagI TCATGA 1 cut(s) 105
PfeI GAWTC 7 cut(s) 28, 326, 469, 747, 870, 923, 1025
PflMI CCANNNNNTGG 1 cut(s) 1352
PkrI GCNGC 3 cut(s) 253, 256, 659
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 1451
PshBI ATTAAT 1 cut(s) 1227
Psp1406I AACGTT 1 cut(s) 1082
Psp6I CCWGG 1 cut(s) 1374
PspGI CCWGG 1 cut(s) 1374
PspN4I GGNNCC 3 cut(s) 984, 1173, 1324
PspPI GGNCC 4 cut(s) 983, 1181, 1355, 1360
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 2 cut(s) 390, 674
PvuII CAGCTG 1 cut(s) 657
RsaI GTAC 4 cut(s) 134, 445, 452, 615
RsaNI GTAC 4 cut(s) 133, 444, 451, 614
RseI CAYNNNNRTG 2 cut(s) 1013, 1236
SaqAI TTAA 8 cut(s) 264, 300, 516, 714, 903, 1227, 1383, 1458
SatI GCNGC 3 cut(s) 252, 255, 658
Sau96I GGNCC 4 cut(s) 983, 1181, 1355, 1360
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 4 cut(s) 7, 113, 432, 1376
SfaNI GCATC 7 cut(s) 669, 796, 817, 881, 1051, 1297, 1431
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 4 cut(s) 983, 1181, 1355, 1360
SmiMI CAYNNNNRTG 2 cut(s) 1013, 1236
SmlI CTYRAG 4 cut(s) 263, 585, 1198, 1382
SmoI CTYRAG 4 cut(s) 263, 585, 1198, 1382
SphI GCATGC 2 cut(s) 150, 813
Sse9I AATT 4 cut(s) 505, 1036, 1207, 1426
SsiI CCGC 6 cut(s) 170, 318, 882, 899, 932, 986
SspMI CTAG 2 cut(s) 821, 914
StyD4I CCNGG 4 cut(s) 5, 111, 430, 1374
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 6 cut(s) 132, 443, 979, 1327, 1391, 1453
TaiI ACGT 1 cut(s) 1085
TaqI TCGA 1 cut(s) 530
TaqII GACCGA 1 cut(s) 1169
TasI AATT 4 cut(s) 505, 1036, 1207, 1426
TatI WGTACW 2 cut(s) 132, 450
TfiI GAWTC 7 cut(s) 28, 326, 469, 747, 870, 923, 1025
Tru1I TTAA 8 cut(s) 264, 300, 516, 714, 903, 1227, 1383, 1458
Tru9I TTAA 8 cut(s) 264, 300, 516, 714, 903, 1227, 1383, 1458
TscAI CASTG 5 cut(s) 901, 1020, 1309, 1396, 1456
TseFI GTSAC 2 cut(s) 1401, 1411
TseI GCWGC 3 cut(s) 251, 254, 657
Tsp45I GTSAC 2 cut(s) 1401, 1411
TspDTI ATGAA 2 cut(s) 122, 1030
TspRI CASTG 5 cut(s) 901, 1020, 1309, 1396, 1456
Van91I CCANNNNNTGG 1 cut(s) 1352
Vha464I CTTAAG 2 cut(s) 263, 1382
VpaK11BI GGWCC 4 cut(s) 983, 1181, 1355, 1360
VspI ATTAAT 1 cut(s) 1227
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 2 cut(s) 150, 813
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 821, 914
ZrmI AGTACT 1 cut(s) 452
Zsp2I ATGCAT 2 cut(s) 811, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.