Rh2AG013300

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007245
Physical Location & Seq
Reverse (-)
1079350 .. 1084170
4821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG013300.1

Sequence Viewer

Length: 1305 bp
ATGGCTGGTACTGGTTTGTTTACAGAGATATTGGATGGAGAAGCCTACAAGTACTACTCCGATGGAGAATGGAAGAAATCATCTTCTGGTAAACTTGTTCCCATCATCAACCCAACTACAAGAAAGGTTCACTACAAGGTTCAAGCTTGTACACAAGAAGAGGTCAACAAGGTGATGGAGTCAGCAAAAACTGCACAGAAGTTATGGGCAAAGACTCCACTTTGGAAGAGAGCAGAGCTACTTCACAAGGCTGCTTCTATCCTCAAGGAACAAAAAGCTCCAATTGCGGAGTGTTTGGTTAAAGAGATTGCTAAGCCTGCTAAAGATGCTGTTACGGAGGTTGTCAGGTCTGGAGATTTGATCTCTTACACTGCTGAAGAAGGGGTCAGGATCCTTGGTGAAGGGAAGTTCTTGTTGTCTGATAGTTTTCCTGGAAATGAAAGAACCAAGTACTGCCTCACTTCCAAGATTCCACTTGGTGTGGTTCTAGCCATTCCACCATTTAACTATCCTGTCAACCTTGCCGTCTCAAAAATTGCTCCGGCATTGATTGCTGGAAACTCTCTTGTGCTCAAACCCCCAACTCAGGGTGCTGTTTCTGCCCTTCATATGGTACATTGTTTTCACTTGGCTGGTTTCCCCAAAGGCCTTATTAGCTGTGTCACTGGGAAAGGATCTGAGATAGGTGACTTCCTTACCATGCACCCCGGAGTGAATTGTATTAGCTTCACTGGTGGTGACACCGGTGTTGCAATTTCCAAAAAGGCAGGCATGATCCCTCTTCAGATGGAGTTGGGAGGAAAAGATGCCTGCATTGTGCTTGAAGATGCTGATCTTGATTTGGTGGCCGTAAACATAATAAAAGGAGGCTTTTCCTACAGTGGTCAGAGATGTACTGCTGTCAAGGTTGTGTTGGTGATGGAATCTGTTGCTGATGCCCTGGTTGAGAAAGTGAAGGCCAAGGTGGCAAAGTTAACCGTCGGGCCACCCGAGGAGAACTGTGACATCACTCCAGTTGTGACGGAATCATCTGCAAACTATATCGAAGGGTTGGTTATGGATGCAAAACAGAAAGAAGCAACATTTTGCCAGGAGTACAGAAGAGAGGGGAACCTTATCTGGCCCTTGTTGTTAGATAATGTCAGACCTGATATGAGAATTGCTTGGGAAGAGCCATTCGGTCCAGTTTTGCCAGTTATTAGGATTAGTACTGTTGAAGAAGGGATCCACCATTGCAATGCTAGCAATTTCGGACTACAGGTAACGCTATTTTATCATAACATGATGCGATTTAATTTAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00010 ko00030 ko01100 ko01120 ko01200 map00010 map00030 map01100 map01120 map01200
Pfam Domains
Protein Families
Aldedh

Protein Analysis

434

Amino Acids

47.16

Weight (kDa)

7.09

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 24 - 429 2.7e-124 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 287
AclWI GGATC 6 cut(s) 385, 398, 682, 769, 1219, 1232
AcoI YGGCCR 1 cut(s) 846
AcuI CTGAAG 2 cut(s) 396, 767
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 8 cut(s) 10, 53, 151, 452, 615, 895, 1097, 1210
AfiI CCNNNNNNNGG 3 cut(s) 586, 587, 610
AgeI ACCGGT 1 cut(s) 743
AgsI TTSAA 3 cut(s) 143, 824, 1217
AjnI CCWGG 3 cut(s) 430, 939, 1089
AluBI AGCT 5 cut(s) 146, 238, 278, 657, 726
AluI AGCT 5 cut(s) 146, 238, 278, 657, 726
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 6 cut(s) 385, 398, 682, 769, 1219, 1232
Ama87I CYCGRG 1 cut(s) 989
AoxI GGCC 5 cut(s) 646, 846, 957, 983, 1121
ApeKI GCWGC 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 743
AspS9I GGNCC 3 cut(s) 983, 1122, 1181
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 5 cut(s) 184, 410, 698, 749, 928
AsuNHI GCTAGC 1 cut(s) 1241
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 1 cut(s) 1181
BamHI GGATCC 2 cut(s) 390, 1224
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 238
BccI CCATC 6 cut(s) 29, 56, 110, 169, 781, 913
BceAI ACGGC 2 cut(s) 509, 833
BciT130I CCWGG 3 cut(s) 432, 941, 1091
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 2 cut(s) 488, 1242
BfmI CTRYAG 2 cut(s) 877, 1256
BglI GCCNNNNNGGC 1 cut(s) 965
BisI GCNGC 1 cut(s) 252
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 3 cut(s) 53, 452, 1210
Bme1390I CCNGG 4 cut(s) 432, 708, 941, 1091
Bme18I GGWCC 1 cut(s) 1181
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 3 cut(s) 983, 1122, 1181
BmiI GGNNCC 3 cut(s) 392, 1112, 1226
BmrFI CCNGG 4 cut(s) 432, 708, 941, 1091
BmrI ACTGGG 1 cut(s) 675
BmsI GCATC 6 cut(s) 316, 796, 817, 925, 1051, 1275
BmtI GCTAGC 1 cut(s) 1245
BmuI ACTGGG 1 cut(s) 675
BpmI CTGGAG 2 cut(s) 372, 996
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 708
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 5 cut(s) 394, 706, 939, 960, 990
BsaWI WCCGGW 1 cut(s) 743
Bsc4I CCNNNNNNNGG 3 cut(s) 586, 587, 610
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 6 cut(s) 16, 670, 736, 1013, 1184, 1193
Bse3DI GCAATG 2 cut(s) 1231, 1243
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 3 cut(s) 432, 941, 1091
BseDI CCNNGG 5 cut(s) 394, 706, 939, 960, 990
BseGI GGATG 2 cut(s) 40, 1066
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 3 cut(s) 586, 587, 610
BseMI GCAATG 2 cut(s) 1231, 1243
BseMII CTCAG 2 cut(s) 599, 669
BseNI ACTGG 6 cut(s) 16, 670, 736, 1013, 1184, 1193
BseRI GAGGAG 1 cut(s) 1007
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 5 cut(s) 648, 848, 959, 985, 1123
BshTI ACCGGT 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 3 cut(s) 542, 708, 744
BslI CCNNNNNNNGG 3 cut(s) 586, 587, 610
BsmAI GTCTC 1 cut(s) 532
BsmBI CGTCTC 1 cut(s) 532
BsnI GGCC 5 cut(s) 648, 848, 959, 985, 1123
BsoBI CYCGRG 1 cut(s) 989
Bsp1286I GDGCHC 1 cut(s) 573
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 6 cut(s) 360, 390, 674, 774, 832, 1224
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 1 cut(s) 287
BspANI GGCC 5 cut(s) 648, 848, 959, 985, 1123
BspCNI CTCAG 2 cut(s) 598, 670
BspLI GGNNCC 3 cut(s) 392, 1112, 1226
BspOI GCTAGC 1 cut(s) 1245
BspPI GGATC 6 cut(s) 385, 398, 682, 769, 1219, 1232
BspQI GCTCTTC 1 cut(s) 1164
BsrDI GCAATG 2 cut(s) 1231, 1243
BsrFI RCCGGY 1 cut(s) 743
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 6 cut(s) 16, 670, 736, 1013, 1184, 1193
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 5 cut(s) 394, 706, 939, 960, 990
BssMI GATC 6 cut(s) 360, 390, 674, 774, 832, 1224
BssT1I CCWWGG 2 cut(s) 394, 960
Bst2UI CCWGG 3 cut(s) 432, 941, 1091
Bst4CI ACNGT 4 cut(s) 881, 979, 1001, 1213
Bst6I CTCTTC 5 cut(s) 153, 221, 786, 1096, 1164
BstAPI GCANNNNNTGC 2 cut(s) 191, 551
BstAUI TGTACA 1 cut(s) 149
BstC8I GCNNGC 4 cut(s) 318, 769, 811, 1243
BstDEI CTNAG 3 cut(s) 312, 585, 678
BstF5I GGATG 2 cut(s) 40, 1066
BstKTI GATC 6 cut(s) 363, 393, 677, 777, 835, 1227
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 6 cut(s) 360, 390, 674, 774, 832, 1224
BstMWI GCNNNNNNNGC 9 cut(s) 191, 284, 317, 326, 551, 599, 654, 965, 1242
BstNI CCWGG 3 cut(s) 432, 941, 1091
BstSCI CCNGG 4 cut(s) 430, 706, 939, 1089
BstSFI CTRYAG 2 cut(s) 877, 1256
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 3 cut(s) 390, 674, 1224
BstYI RGATCY 3 cut(s) 390, 674, 1224
BsuRI GGCC 5 cut(s) 648, 848, 959, 985, 1123
BtsCI GGATG 2 cut(s) 40, 1066
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 4 cut(s) 369, 663, 729, 886
Cac8I GCNNGC 4 cut(s) 318, 769, 811, 1243
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 3 cut(s) 983, 1122, 1181
Csp6I GTAC 8 cut(s) 9, 52, 150, 451, 614, 894, 1096, 1209
CspAI ACCGGT 1 cut(s) 743
CviAII CATG 3 cut(s) 700, 772, 1282
CviQI GTAC 8 cut(s) 9, 52, 150, 451, 614, 894, 1096, 1209
DdeI CTNAG 3 cut(s) 312, 585, 678
DpnI GATC 6 cut(s) 362, 392, 676, 776, 834, 1226
DpnII GATC 6 cut(s) 360, 390, 674, 774, 832, 1224
DraIII CACNNNGTG 1 cut(s) 479
EaeI YGGCCR 1 cut(s) 846
Eam1104I CTCTTC 5 cut(s) 153, 221, 786, 1096, 1164
EarI CTCTTC 5 cut(s) 153, 221, 786, 1096, 1164
Eco130I CCWWGG 2 cut(s) 394, 960
Eco147I AGGCCT 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 1181
Eco57I CTGAAG 2 cut(s) 396, 767
Eco88I CYCGRG 1 cut(s) 989
EcoRII CCWGG 3 cut(s) 430, 939, 1089
EcoT14I CCWWGG 2 cut(s) 394, 960
ErhI CCWWGG 2 cut(s) 394, 960
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 3 cut(s) 703, 775, 1285
FatI CATG 3 cut(s) 699, 771, 1281
FauNDI CATATG 1 cut(s) 609
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 2 cut(s) 47, 1073
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 488, 1242
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 372, 996
HaeIII GGCC 5 cut(s) 648, 848, 959, 985, 1123
HapII CCGG 3 cut(s) 542, 708, 744
Hin1II CATG 3 cut(s) 703, 775, 1285
HincII GTYRAC 3 cut(s) 166, 517, 975
HindII GTYRAC 3 cut(s) 166, 517, 975
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 5 cut(s) 179, 214, 469, 923, 1025
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 3 cut(s) 542, 708, 744
HphI GGTGA 5 cut(s) 184, 410, 698, 749, 928
Hpy166II GTNNAC 8 cut(s) 21, 92, 130, 152, 166, 517, 853, 975
Hpy188I TCNGA 7 cut(s) 61, 421, 679, 786, 888, 1145, 1253
Hpy188III TCNNGA 3 cut(s) 351, 388, 836
Hpy8I GTNNAC 8 cut(s) 21, 92, 130, 152, 166, 517, 853, 975
Hpy99I CGWCG 1 cut(s) 983
HpyAV CCTTC 6 cut(s) 374, 395, 614, 949, 1040, 1214
HpyCH4III ACNGT 4 cut(s) 881, 979, 1001, 1213
HpyCH4V TGCA 7 cut(s) 194, 703, 752, 813, 1034, 1064, 1236
HpyF10VI GCNNNNNNNGC 9 cut(s) 191, 284, 317, 326, 551, 599, 654, 965, 1242
HpyF3I CTNAG 3 cut(s) 312, 585, 678
Hsp92II CATG 3 cut(s) 703, 775, 1285
KspAI GTTAAC 1 cut(s) 975
Kzo9I GATC 6 cut(s) 360, 390, 674, 774, 832, 1224
LguI GCTCTTC 1 cut(s) 1164
LmnI GCTCC 2 cut(s) 283, 544
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 6 cut(s) 316, 796, 817, 925, 1051, 1275
MaeI CTAG 2 cut(s) 488, 1242
MaeIII GTNAC 7 cut(s) 331, 661, 686, 737, 1001, 1018, 1261
MalI GATC 6 cut(s) 362, 392, 676, 776, 834, 1226
MboI GATC 6 cut(s) 360, 390, 674, 774, 832, 1224
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 3 cut(s) 390, 674, 1224
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 7 cut(s) 282, 534, 715, 753, 1158, 1246, 1294
MlyI GAGTC 2 cut(s) 188, 208
MnlI CCTC 9 cut(s) 154, 272, 331, 467, 789, 791, 860, 985, 1099
MseI TTAA 5 cut(s) 300, 504, 974, 1293, 1298
MslI CAYNNNNRTG 1 cut(s) 1236
MspI CCGG 3 cut(s) 542, 708, 744
MspR9I CCNGG 4 cut(s) 432, 708, 941, 1091
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 3 cut(s) 432, 941, 1091
MwoI GCNNNNNNNGC 9 cut(s) 191, 284, 317, 326, 551, 599, 654, 965, 1242
NciI CCSGG 1 cut(s) 708
NdeI CATATG 1 cut(s) 609
NdeII GATC 6 cut(s) 360, 390, 674, 774, 832, 1224
NheI GCTAGC 1 cut(s) 1241
NlaIII CATG 3 cut(s) 703, 775, 1285
NlaIV GGNNCC 3 cut(s) 392, 1112, 1226
NmuCI GTSAC 5 cut(s) 661, 686, 737, 1001, 1018
PceI AGGCCT 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 1164
PcsI WCGNNNNNNNCGW 1 cut(s) 987
PfeI GAWTC 3 cut(s) 469, 923, 1025
PfoI TCCNGGA 1 cut(s) 430
PinAI ACCGGT 1 cut(s) 743
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 187, 208
PpsI GAGTC 2 cut(s) 187, 208
Psp6I CCWGG 3 cut(s) 430, 939, 1089
PspGI CCWGG 3 cut(s) 430, 939, 1089
PspN4I GGNNCC 3 cut(s) 392, 1112, 1226
PspPI GGNCC 3 cut(s) 983, 1122, 1181
PsuI RGATCY 3 cut(s) 390, 674, 1224
RsaI GTAC 8 cut(s) 10, 53, 151, 452, 615, 895, 1097, 1210
RsaNI GTAC 8 cut(s) 9, 52, 150, 451, 614, 894, 1096, 1209
RseI CAYNNNNRTG 1 cut(s) 1236
SapI GCTCTTC 1 cut(s) 1164
SaqAI TTAA 5 cut(s) 300, 504, 974, 1293, 1298
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 6 cut(s) 360, 390, 674, 774, 832, 1224
Sau96I GGNCC 3 cut(s) 983, 1122, 1181
ScaI AGTACT 3 cut(s) 53, 452, 1210
SchI GAGTC 2 cut(s) 188, 208
ScrFI CCNGG 4 cut(s) 432, 708, 941, 1091
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 6 cut(s) 316, 796, 817, 925, 1051, 1275
SfcI CTRYAG 2 cut(s) 877, 1256
SgrAI CRCCGGYG 1 cut(s) 743
SinI GGWCC 1 cut(s) 1181
SmiMI CAYNNNNRTG 1 cut(s) 1236
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 7 cut(s) 282, 534, 715, 753, 1158, 1246, 1294
SseBI AGGCCT 1 cut(s) 648
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 488, 1242
StuI AGGCCT 1 cut(s) 648
StyD4I CCNGG 4 cut(s) 430, 706, 939, 1089
StyI CCWWGG 2 cut(s) 394, 960
TaaI ACNGT 4 cut(s) 881, 979, 1001, 1213
TaqI TCGA 1 cut(s) 1044
TaqII GACCGA 1 cut(s) 1169
TasI AATT 7 cut(s) 282, 534, 715, 753, 1158, 1246, 1294
TatI WGTACW 6 cut(s) 51, 149, 450, 893, 1095, 1208
TfiI GAWTC 3 cut(s) 469, 923, 1025
Tru1I TTAA 5 cut(s) 300, 504, 974, 1293, 1298
Tru9I TTAA 5 cut(s) 300, 504, 974, 1293, 1298
TscAI CASTG 4 cut(s) 376, 670, 736, 886
TseFI GTSAC 5 cut(s) 661, 686, 737, 1001, 1018
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 5 cut(s) 661, 686, 737, 1001, 1018
TspDTI ATGAA 2 cut(s) 453, 596
TspGWI ACGGA 2 cut(s) 350, 1037
TspRI CASTG 4 cut(s) 376, 670, 736, 886
VpaK11BI GGWCC 1 cut(s) 1181
XspI CTAG 2 cut(s) 488, 1242
ZrmI AGTACT 3 cut(s) 53, 452, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.