Rw2G001190

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007245
Physical Location & Seq
Reverse (-)
1018261 .. 1020518
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001190.1

Sequence Viewer

Length: 1332 bp
ATGGCTGGTACTGGTTTGTTTACAGAGATATTGGATGGAGAAGCCTACAAGTACTACTCCGATGGAGAATGGAAGAAATCATCTTCTGGTAAACTTGTTCCCATCATCAACCCAACTACAAGAAAGGTTCACTACAAGGTTCAAGCTTGTACACAAGAAGAGGTCAACAAGGTGATGGAGTCAGCAAAAACTGCACAGAAGTTATGGGCAAAGACTCCACTTTGGAAGAGAGCAGAGCTACTTCACAAGGCTGCTTCTATCCTCAAGGAACAAAAAGCTCCAATTGCGGAGTGTTTGGTTAAAGAGATTGCTAAGCCTGCTAAAGATGCTGTTACGGAGGTTGTCAGGTCTGGAGATTTGATCTCTTACACTGCTGAAGAAGGGGTCAGGATCCTTGGTGAAGGGAAGTTCTTGTTGTCTGATAGTTTTCCTGGAAATGAAAGAACCAAGTACTGCCTCACTTCCAAGATTCCACTTGGTGTGGTTCTAGCCATTCCACCATTTAACTATCCTGTCAACCTTGCCGTCTCAAAAATTGCTCCGGCATTGATTGCTGGAAACTCTCTTGTGCTCAAACCCCCAACTCAGGGTGCTGTTTCTGCCCTTCATATGGTACATTGTTTTCACTTGGCTGGTTTCCCCAAAGGCCTTATTAGCTGTGTCACTGGGAAAGGATCTGAGATAGGTGACTTCCTTACCATGCACCCCGGAGTGAATTGTATTAGCTTCACTGGTGGTGACACCGGTGTTGCAATTTCCAAAAAGGCAGGCATGATCCCTCTTCAGATGGAGTTGGGAGGAAAAGATGCCTGCATTGTGCTTGAAGATGCTGATCTTGATTTGGTGGCCGTAAACATAATAAAAGGAGGCTTTTCCTACAGTGGTCAGAGATGTACTGCTGTCAAGGTTGTGTTGGTGATGGAATCTGTTGCTGATGCCCTGGTTGAGAAAGTGAAGGCCAAGGTGGCAAAGTTAACCGTCGGGCCACCCGAGGAGAACTGTGACATCACTCCAGTTGTGACGGAATCATCTGCAAACTATATCGAAGGGTTGGTTATGGATGCAAAACAGAAAGAAGCAACATTTTGCCAGGAGTACAGAAGAGAGGGGAACCTTATCTGGCCCTTGTTGTTAGATAATGTCAGACCTGATATGAGAATTGCTTGGGAAGAGCCATTCGGTCCAGTTTTGCCAGTTATTAGGATTAGTACTGTTGAAGAAGTAAAAGATAGTGGAATTGGGTCACAGGGAATCACCAACAGCATCAATATGATGACAAAGATCAAGACCACTGTAATCAACTTACCAACCCCTTCTTACACCATGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00010 ko00030 ko01100 ko01120 ko01200 map00010 map00030 map01100 map01120 map01200
Pfam Domains
Protein Families
Aldedh

Protein Analysis

443

Amino Acids

47.8

Weight (kDa)

7.49

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 24 - 408 2e-118 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 287
AclWI GGATC 4 cut(s) 385, 398, 682, 769
AcoI YGGCCR 1 cut(s) 846
AcuI CTGAAG 2 cut(s) 396, 767
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 8 cut(s) 10, 53, 151, 452, 615, 895, 1097, 1210
AfiI CCNNNNNNNGG 3 cut(s) 586, 587, 610
AgeI ACCGGT 1 cut(s) 743
AgsI TTSAA 3 cut(s) 143, 824, 1217
AjnI CCWGG 3 cut(s) 430, 939, 1089
AluBI AGCT 5 cut(s) 146, 238, 278, 657, 726
AluI AGCT 5 cut(s) 146, 238, 278, 657, 726
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 4 cut(s) 385, 398, 682, 769
Ama87I CYCGRG 1 cut(s) 989
AoxI GGCC 5 cut(s) 646, 846, 957, 983, 1121
ApeKI GCWGC 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 743
AspS9I GGNCC 3 cut(s) 983, 1122, 1181
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 6 cut(s) 184, 410, 698, 749, 928, 1246
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 1 cut(s) 1181
BamHI GGATCC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 238
BccI CCATC 6 cut(s) 29, 56, 110, 169, 781, 913
BceAI ACGGC 2 cut(s) 509, 833
BciT130I CCWGG 3 cut(s) 432, 941, 1091
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 877
BglI GCCNNNNNGGC 1 cut(s) 965
BisI GCNGC 1 cut(s) 252
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 3 cut(s) 53, 452, 1210
Bme1390I CCNGG 4 cut(s) 432, 708, 941, 1091
Bme18I GGWCC 1 cut(s) 1181
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 3 cut(s) 983, 1122, 1181
BmiI GGNNCC 2 cut(s) 392, 1112
BmrFI CCNGG 4 cut(s) 432, 708, 941, 1091
BmrI ACTGGG 1 cut(s) 675
BmsI GCATC 6 cut(s) 316, 796, 817, 925, 1051, 1272
BmuI ACTGGG 1 cut(s) 675
BpmI CTGGAG 2 cut(s) 372, 996
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 708
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 6 cut(s) 394, 706, 939, 960, 990, 1323
BsaWI WCCGGW 1 cut(s) 743
Bsc4I CCNNNNNNNGG 3 cut(s) 586, 587, 610
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 6 cut(s) 16, 670, 736, 1013, 1184, 1193
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 3 cut(s) 432, 941, 1091
BseDI CCNNGG 6 cut(s) 394, 706, 939, 960, 990, 1323
BseGI GGATG 2 cut(s) 40, 1066
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 3 cut(s) 586, 587, 610
BseMII CTCAG 2 cut(s) 599, 669
BseNI ACTGG 6 cut(s) 16, 670, 736, 1013, 1184, 1193
BseRI GAGGAG 1 cut(s) 1007
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 5 cut(s) 648, 848, 959, 985, 1123
BshTI ACCGGT 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 3 cut(s) 542, 708, 744
BslI CCNNNNNNNGG 3 cut(s) 586, 587, 610
BsmAI GTCTC 1 cut(s) 532
BsmBI CGTCTC 1 cut(s) 532
BsnI GGCC 5 cut(s) 648, 848, 959, 985, 1123
BsoBI CYCGRG 1 cut(s) 989
Bsp1286I GDGCHC 1 cut(s) 573
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 6 cut(s) 360, 390, 674, 774, 832, 1281
Bsp1720I GCTNAGC 1 cut(s) 312
Bsp19I CCATGG 1 cut(s) 1323
BspACI CCGC 1 cut(s) 287
BspANI GGCC 5 cut(s) 648, 848, 959, 985, 1123
BspCNI CTCAG 2 cut(s) 598, 670
BspLI GGNNCC 2 cut(s) 392, 1112
BspPI GGATC 4 cut(s) 385, 398, 682, 769
BspQI GCTCTTC 1 cut(s) 1164
BsrFI RCCGGY 1 cut(s) 743
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 6 cut(s) 16, 670, 736, 1013, 1184, 1193
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 6 cut(s) 394, 706, 939, 960, 990, 1323
BssMI GATC 6 cut(s) 360, 390, 674, 774, 832, 1281
BssT1I CCWWGG 3 cut(s) 394, 960, 1323
Bst2UI CCWGG 3 cut(s) 432, 941, 1091
Bst4CI ACNGT 5 cut(s) 881, 979, 1001, 1213, 1294
Bst6I CTCTTC 5 cut(s) 153, 221, 786, 1096, 1164
BstAPI GCANNNNNTGC 2 cut(s) 191, 551
BstAUI TGTACA 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 318, 769, 811
BstDEI CTNAG 3 cut(s) 312, 585, 678
BstDSI CCRYGG 1 cut(s) 1323
BstF5I GGATG 2 cut(s) 40, 1066
BstKTI GATC 6 cut(s) 363, 393, 677, 777, 835, 1284
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 6 cut(s) 360, 390, 674, 774, 832, 1281
BstMWI GCNNNNNNNGC 8 cut(s) 191, 284, 317, 326, 551, 599, 654, 965
BstNI CCWGG 3 cut(s) 432, 941, 1091
BstSCI CCNGG 4 cut(s) 430, 706, 939, 1089
BstSFI CTRYAG 1 cut(s) 877
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 2 cut(s) 390, 674
BstYI RGATCY 2 cut(s) 390, 674
BsuRI GGCC 5 cut(s) 648, 848, 959, 985, 1123
BtgI CCRYGG 1 cut(s) 1323
BtsCI GGATG 2 cut(s) 40, 1066
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 5 cut(s) 369, 663, 729, 886, 1290
Cac8I GCNNGC 3 cut(s) 318, 769, 811
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 3 cut(s) 983, 1122, 1181
Csp6I GTAC 8 cut(s) 9, 52, 150, 451, 614, 894, 1096, 1209
CspAI ACCGGT 1 cut(s) 743
CviAII CATG 3 cut(s) 700, 772, 1324
CviQI GTAC 8 cut(s) 9, 52, 150, 451, 614, 894, 1096, 1209
DdeI CTNAG 3 cut(s) 312, 585, 678
DpnI GATC 6 cut(s) 362, 392, 676, 776, 834, 1283
DpnII GATC 6 cut(s) 360, 390, 674, 774, 832, 1281
DraIII CACNNNGTG 1 cut(s) 479
EaeI YGGCCR 1 cut(s) 846
Eam1104I CTCTTC 5 cut(s) 153, 221, 786, 1096, 1164
EarI CTCTTC 5 cut(s) 153, 221, 786, 1096, 1164
Eco130I CCWWGG 3 cut(s) 394, 960, 1323
Eco147I AGGCCT 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 1181
Eco57I CTGAAG 2 cut(s) 396, 767
Eco88I CYCGRG 1 cut(s) 989
EcoRII CCWGG 3 cut(s) 430, 939, 1089
EcoT14I CCWWGG 3 cut(s) 394, 960, 1323
ErhI CCWWGG 3 cut(s) 394, 960, 1323
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 3 cut(s) 703, 775, 1327
FatI CATG 3 cut(s) 699, 771, 1323
FauNDI CATATG 1 cut(s) 609
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 2 cut(s) 47, 1073
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 488
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 372, 996
HaeIII GGCC 5 cut(s) 648, 848, 959, 985, 1123
HapII CCGG 3 cut(s) 542, 708, 744
Hin1II CATG 3 cut(s) 703, 775, 1327
HincII GTYRAC 3 cut(s) 166, 517, 975
HindII GTYRAC 3 cut(s) 166, 517, 975
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 6 cut(s) 179, 214, 469, 923, 1025, 1251
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 3 cut(s) 542, 708, 744
HphI GGTGA 6 cut(s) 184, 410, 698, 749, 928, 1246
Hpy166II GTNNAC 8 cut(s) 21, 92, 130, 152, 166, 517, 853, 975
Hpy188I TCNGA 6 cut(s) 61, 421, 679, 786, 888, 1145
Hpy188III TCNNGA 4 cut(s) 351, 388, 836, 1285
Hpy8I GTNNAC 8 cut(s) 21, 92, 130, 152, 166, 517, 853, 975
Hpy99I CGWCG 1 cut(s) 983
HpyAV CCTTC 6 cut(s) 374, 395, 614, 949, 1040, 1323
HpyCH4III ACNGT 5 cut(s) 881, 979, 1001, 1213, 1294
HpyCH4V TGCA 6 cut(s) 194, 703, 752, 813, 1034, 1064
HpyF10VI GCNNNNNNNGC 8 cut(s) 191, 284, 317, 326, 551, 599, 654, 965
HpyF3I CTNAG 3 cut(s) 312, 585, 678
Hsp92II CATG 3 cut(s) 703, 775, 1327
KspAI GTTAAC 1 cut(s) 975
Kzo9I GATC 6 cut(s) 360, 390, 674, 774, 832, 1281
LguI GCTCTTC 1 cut(s) 1164
LmnI GCTCC 2 cut(s) 283, 544
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 6 cut(s) 316, 796, 817, 925, 1051, 1272
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 7 cut(s) 331, 661, 686, 737, 1001, 1018, 1242
MalI GATC 6 cut(s) 362, 392, 676, 776, 834, 1283
MboI GATC 6 cut(s) 360, 390, 674, 774, 832, 1281
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 2 cut(s) 390, 674
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 6 cut(s) 282, 534, 715, 753, 1158, 1236
MlyI GAGTC 2 cut(s) 188, 208
MnlI CCTC 9 cut(s) 154, 272, 331, 467, 789, 791, 860, 985, 1099
MseI TTAA 3 cut(s) 300, 504, 974
MslI CAYNNNNRTG 1 cut(s) 1268
MspI CCGG 3 cut(s) 542, 708, 744
MspR9I CCNGG 4 cut(s) 432, 708, 941, 1091
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 3 cut(s) 432, 941, 1091
MwoI GCNNNNNNNGC 8 cut(s) 191, 284, 317, 326, 551, 599, 654, 965
NciI CCSGG 1 cut(s) 708
NcoI CCATGG 1 cut(s) 1323
NdeI CATATG 1 cut(s) 609
NdeII GATC 6 cut(s) 360, 390, 674, 774, 832, 1281
NlaIII CATG 3 cut(s) 703, 775, 1327
NlaIV GGNNCC 2 cut(s) 392, 1112
NmuCI GTSAC 6 cut(s) 661, 686, 737, 1001, 1018, 1242
PceI AGGCCT 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 1164
PcsI WCGNNNNNNNCGW 1 cut(s) 987
PfeI GAWTC 4 cut(s) 469, 923, 1025, 1251
PfoI TCCNGGA 1 cut(s) 430
PinAI ACCGGT 1 cut(s) 743
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 187, 208
PpsI GAGTC 2 cut(s) 187, 208
Psp6I CCWGG 3 cut(s) 430, 939, 1089
PspGI CCWGG 3 cut(s) 430, 939, 1089
PspN4I GGNNCC 2 cut(s) 392, 1112
PspPI GGNCC 3 cut(s) 983, 1122, 1181
PsuI RGATCY 2 cut(s) 390, 674
RsaI GTAC 8 cut(s) 10, 53, 151, 452, 615, 895, 1097, 1210
RsaNI GTAC 8 cut(s) 9, 52, 150, 451, 614, 894, 1096, 1209
RseI CAYNNNNRTG 1 cut(s) 1268
SapI GCTCTTC 1 cut(s) 1164
SaqAI TTAA 3 cut(s) 300, 504, 974
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 6 cut(s) 360, 390, 674, 774, 832, 1281
Sau96I GGNCC 3 cut(s) 983, 1122, 1181
ScaI AGTACT 3 cut(s) 53, 452, 1210
SchI GAGTC 2 cut(s) 188, 208
ScrFI CCNGG 4 cut(s) 432, 708, 941, 1091
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 6 cut(s) 316, 796, 817, 925, 1051, 1272
SfcI CTRYAG 1 cut(s) 877
SgrAI CRCCGGYG 1 cut(s) 743
SinI GGWCC 1 cut(s) 1181
SmiMI CAYNNNNRTG 1 cut(s) 1268
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 6 cut(s) 282, 534, 715, 753, 1158, 1236
SseBI AGGCCT 1 cut(s) 648
SsiI CCGC 1 cut(s) 287
SspMI CTAG 1 cut(s) 488
StuI AGGCCT 1 cut(s) 648
StyD4I CCNGG 4 cut(s) 430, 706, 939, 1089
StyI CCWWGG 3 cut(s) 394, 960, 1323
TaaI ACNGT 5 cut(s) 881, 979, 1001, 1213, 1294
TaqI TCGA 1 cut(s) 1044
TaqII GACCGA 1 cut(s) 1169
TasI AATT 6 cut(s) 282, 534, 715, 753, 1158, 1236
TatI WGTACW 6 cut(s) 51, 149, 450, 893, 1095, 1208
TfiI GAWTC 4 cut(s) 469, 923, 1025, 1251
Tru1I TTAA 3 cut(s) 300, 504, 974
Tru9I TTAA 3 cut(s) 300, 504, 974
TscAI CASTG 5 cut(s) 376, 670, 736, 886, 1297
TseFI GTSAC 6 cut(s) 661, 686, 737, 1001, 1018, 1242
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 6 cut(s) 661, 686, 737, 1001, 1018, 1242
TspDTI ATGAA 2 cut(s) 453, 596
TspGWI ACGGA 2 cut(s) 350, 1037
TspRI CASTG 5 cut(s) 376, 670, 736, 886, 1297
VpaK11BI GGWCC 1 cut(s) 1181
XspI CTAG 1 cut(s) 488
ZrmI AGTACT 3 cut(s) 53, 452, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.