Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007245

Physical Location & Seq

Genomic Coordinates Reverse (-)

9446721 .. 9448038

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTGCATTGCTTCCACTTGGCTGGATTTCCCAAAGGCCTTATTAGCTGTGTCACTGGGAAAGGATCTGAGATCGGCGACTTCCTTACCATGCATCCTGGAGTGAACTGCATTAGCTTCACTGGTGGTGACACCGGCATTGCAATTTCGAAAAAGGCAGGCATGATCGATCTTCAGATGGAGTTGGGAGGAAAAGATGCATGCATTGTGCTTGAAGATGCCGACCTAGATTTGGTCGCAGCAAACATAATAAAGGGAGGCTTTTCTTACAGCGGTCAAAGATGTACTGCTGTTAAGGTTGTCTTGGTGATGGAATCCGTTGCTGATGCCCTGGTCGCGAAAGTGAATGCACGAGTGGCGAAATTAACTGTTGGTCCACCAGAGGATAACAGCGACATCACTCCCGTTGTTTCAGAATCATCTGCGAATTTTATTGAAGGTTTGGTTGTGGATGCAAAACAGAAGGGAGCAACATTTTGCCAAGAGTACAAGAGAGACGGCAACCTTATCTGGCCTTTGTTGTTAGATAATGTCAGGCCGGACATGAGAATTGCATGGGAAGAGCCATTCGGTCCAGTTTTGCCCGTTATTAGGATTACTACGGTGGAAGAAGGGATCCACCATTGCAATGCCAGTAACTTCGGACTCCAGGGCTGTGTGTTCACAAAGGACATCAACAAGGCCATTTTGATCGGTGATGCAATGGAGACGGGAACTGTTCAAATAAACTCCGCACCTGCTCGTGGACCAGATCATTTTCCGTTCCAGGGCATAAAGGACAGTGGAATCGGGTCCCAAGGAATCACCAACAGCATCAACATGATGACCAAGATCAAGACCACTGTAATCAACTTGCCAACCCCTTCTTACACCATGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko01100 ko01120 ko01200 map00010 map00030 map01100 map01120 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

294

Amino Acids

31.12

Weight (kDa)

5.37

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24270 AT2G24270 AT2G24270 AT2G24270
fragaria_vesca	FvH4_1g01130 FvH4_1g01130
malus_domestica	MD02G1009300.v1.1 MD15G1154800.v1.1
prunus_persica	Prupe.7G260700_v2.0.a1 Prupe.7G260700_v2.0.a1 Prupe.7G260700_v2.0.a1
pyrus_communis	pycom02g00830 pycom15g13830
rosa_chinensis	RchiOBHm_Chr2g0085921
rosa_laevigata	RLG00000015727
rosa_multiflora	Rmu_sc0001748.1_g000003 Rmu_ssc0000355.1_g000030
rosa_roxburghii	Rroxscaffold_2G00154930
rosa_rugosa	Rorug01G0464300 Rorug01G0464400
rosa_samantha	Rh2AG013300 Rh2BG014000 Rh2CG014500 Rh2DG015800
rosa_wichuraiana	Rw2G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	745
AccII	CGCG	1 cut(s)	338
AciI	CCGC	2 cut(s)	273, 732
AclWI	GGATC	3 cut(s)	73, 610, 623
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	2 cut(s)	286, 488
AfiI	CCNNNNNNNGG	4 cut(s)	232, 591, 743, 767
AgsI	TTSAA	3 cut(s)	215, 437, 722
AjnI	CCWGG	4 cut(s)	97, 330, 648, 765
AluBI	AGCT	2 cut(s)	48, 117
AluI	AGCT	2 cut(s)	48, 117
Alw26I	GTCTC	2 cut(s)	489, 701
AlwI	GGATC	3 cut(s)	73, 610, 623
AoxI	GGCC	4 cut(s)	37, 512, 536, 681
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	427
AspS9I	GGNCC	4 cut(s)	374, 572, 746, 792
AsuHPI	GGTGA	4 cut(s)	140, 319, 707, 796
AsuII	TTCGAA	1 cut(s)	149
AvaII	GGWCC	4 cut(s)	374, 572, 746, 792
BamHI	GGATCC	1 cut(s)	615
BauI	CACGAG	2 cut(s)	351, 741
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	172, 304
BceAI	ACGGC	1 cut(s)	514
BciT130I	CCWGG	4 cut(s)	99, 332, 650, 767
BcoDI	GTCTC	2 cut(s)	489, 701
BfaI	CTAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	4 cut(s)	99, 332, 650, 767
Bme18I	GGWCC	4 cut(s)	374, 572, 746, 792
BmgT120I	GGNCC	4 cut(s)	374, 572, 746, 792
BmiI	GGNNCC	3 cut(s)	617, 793, 794
BmrFI	CCNGG	4 cut(s)	99, 332, 650, 767
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	7 cut(s)	103, 187, 208, 316, 442, 688, 822
BmuI	ACTGGG	1 cut(s)	66
BpmI	CTGGAG	2 cut(s)	120, 632
Bpu14I	TTCGAA	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	168
BsaJI	CCNNGG	5 cut(s)	330, 649, 766, 796, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 591, 743, 767
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	4 cut(s)	61, 127, 575, 633
Bse3DI	GCAATG	5 cut(s)	7, 138, 622, 634, 708
BseBI	CCWGG	4 cut(s)	99, 332, 650, 767
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	5 cut(s)	330, 649, 766, 796, 873
BseGI	GGATG	2 cut(s)	94, 457
BseLI	CCNNNNNNNGG	4 cut(s)	232, 591, 743, 767
BseMI	GCAATG	5 cut(s)	7, 138, 622, 634, 708
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	4 cut(s)	61, 127, 575, 633
BseXI	GCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	4 cut(s)	39, 514, 538, 683
BshVI	ATCGAT	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	135, 539
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	4 cut(s)	232, 591, 743, 767
BsmAI	GTCTC	2 cut(s)	489, 701
BsmBI	CGTCTC	2 cut(s)	489, 701
BsmFI	GGGAC	1 cut(s)	778
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	4 cut(s)	39, 514, 538, 683
Bsp119I	TTCGAA	1 cut(s)	149
Bsp143I	GATC	8 cut(s)	65, 72, 165, 169, 615, 690, 751, 831
Bsp19I	CCATGG	1 cut(s)	873
Bsp68I	TCGCGA	1 cut(s)	338
BspACI	CCGC	2 cut(s)	273, 732
BspANI	GGCC	4 cut(s)	39, 514, 538, 683
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	3 cut(s)	617, 793, 794
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	3 cut(s)	73, 610, 623
BspQI	GCTCTTC	1 cut(s)	555
BspT104I	TTCGAA	1 cut(s)	149
BsrDI	GCAATG	5 cut(s)	7, 138, 622, 634, 708
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	4 cut(s)	61, 127, 575, 633
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	5 cut(s)	330, 649, 766, 796, 873
BssMI	GATC	8 cut(s)	65, 72, 165, 169, 615, 690, 751, 831
BssSI	CACGAG	2 cut(s)	351, 741
BssT1I	CCWWGG	2 cut(s)	796, 873
Bst2BI	CACGAG	2 cut(s)	351, 741
Bst2UI	CCWGG	4 cut(s)	99, 332, 650, 767
Bst4CI	ACNGT	5 cut(s)	370, 604, 718, 782, 844
Bst6I	CTCTTC	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	160, 202
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	873
BstF5I	GGATG	2 cut(s)	94, 457
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	8 cut(s)	68, 75, 168, 172, 618, 693, 754, 834
BstMAI	GTCTC	2 cut(s)	489, 701
BstMBI	GATC	8 cut(s)	65, 72, 165, 169, 615, 690, 751, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 335, 356
BstNI	CCWGG	4 cut(s)	99, 332, 650, 767
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	4 cut(s)	97, 330, 648, 765
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	2 cut(s)	65, 615
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	2 cut(s)	65, 615
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	4 cut(s)	39, 514, 538, 683
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	2 cut(s)	94, 457
BtsIMutI	CAGTG	4 cut(s)	54, 120, 787, 840
BtuMI	TCGCGA	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	2 cut(s)	160, 202
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	4 cut(s)	374, 572, 746, 792
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	285, 487
CviAII	CATG	7 cut(s)	91, 163, 201, 544, 555, 820, 874
CviQI	GTAC	2 cut(s)	285, 487
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	8 cut(s)	67, 74, 167, 171, 617, 692, 753, 833
DpnII	GATC	8 cut(s)	65, 72, 165, 169, 615, 690, 751, 831
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco130I	CCWWGG	2 cut(s)	796, 873
Eco147I	AGGCCT	1 cut(s)	39
Eco47I	GGWCC	4 cut(s)	374, 572, 746, 792
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	792
EcoRII	CCWGG	4 cut(s)	97, 330, 648, 765
EcoT14I	CCWWGG	2 cut(s)	796, 873
EcoT22I	ATGCAT	3 cut(s)	96, 202, 206
ErhI	CCWWGG	2 cut(s)	796, 873
Esp3I	CGTCTC	2 cut(s)	489, 701
FaeI	CATG	7 cut(s)	94, 166, 204, 547, 558, 823, 877
FaiI	YATR	9 cut(s)	92, 164, 202, 248, 545, 556, 773, 821, 875
FalI	AAGNNNNNCTT	4 cut(s)	245, 277, 287, 319
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	7 cut(s)	90, 162, 200, 543, 554, 819, 873
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	81, 464
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	2 cut(s)	120, 632
HaeIII	GGCC	4 cut(s)	39, 514, 538, 683
HapII	CCGG	2 cut(s)	135, 539
Hin1II	CATG	7 cut(s)	94, 166, 204, 547, 558, 823, 877
HinfI	GANTC	5 cut(s)	314, 416, 645, 786, 801
HpaII	CCGG	2 cut(s)	135, 539
HphI	GGTGA	4 cut(s)	140, 319, 707, 796
Hpy166II	GTNNAC	4 cut(s)	106, 377, 663, 746
Hpy188I	TCNGA	4 cut(s)	70, 177, 415, 644
Hpy188III	TCNNGA	2 cut(s)	337, 835
Hpy8I	GTNNAC	4 cut(s)	106, 377, 663, 746
HpyAV	CCTTC	4 cut(s)	431, 457, 605, 873
HpyCH4III	ACNGT	5 cut(s)	370, 604, 718, 782, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 335, 356
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	7 cut(s)	94, 166, 204, 547, 558, 823, 877
KflI	GGGWCCC	1 cut(s)	792
Kzo9I	GATC	8 cut(s)	65, 72, 165, 169, 615, 690, 751, 831
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	7 cut(s)	103, 187, 208, 316, 442, 688, 822
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	52, 128, 635
MalI	GATC	8 cut(s)	67, 74, 167, 171, 617, 692, 753, 833
MboI	GATC	8 cut(s)	65, 72, 165, 169, 615, 690, 751, 831
MboII	GAAGA	4 cut(s)	164, 227, 572, 620
MflI	RGATCY	2 cut(s)	65, 615
MluCI	AATT	4 cut(s)	144, 362, 427, 549
MlyI	GAGTC	1 cut(s)	639
MnlI	CCTC	3 cut(s)	182, 251, 376
Mph1103I	ATGCAT	3 cut(s)	96, 202, 206
MseI	TTAA	2 cut(s)	294, 365
MslI	CAYNNNNRTG	2 cut(s)	627, 818
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	2 cut(s)	135, 539
MspR9I	CCNGG	4 cut(s)	99, 332, 650, 767
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	4 cut(s)	99, 332, 650, 767
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	45, 335, 356
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	8 cut(s)	65, 72, 165, 169, 615, 690, 751, 831
NlaIII	CATG	7 cut(s)	94, 166, 204, 547, 558, 823, 877
NlaIV	GGNNCC	3 cut(s)	617, 793, 794
NmuCI	GTSAC	2 cut(s)	52, 128
NruI	TCGCGA	1 cut(s)	338
NsiI	ATGCAT	3 cut(s)	96, 202, 206
NspI	RCATGY	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	204
PaqCI	CACCTGC	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	555
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	4 cut(s)	314, 416, 786, 801
PfoI	TCCNGGA	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
PpuMI	RGGWCCY	1 cut(s)	792
Psp5II	RGGWCCY	1 cut(s)	792
Psp6I	CCWGG	4 cut(s)	97, 330, 648, 765
PspGI	CCWGG	4 cut(s)	97, 330, 648, 765
PspN4I	GGNNCC	3 cut(s)	617, 793, 794
PspPI	GGNCC	4 cut(s)	374, 572, 746, 792
PspPPI	RGGWCCY	1 cut(s)	792
PsuI	RGATCY	2 cut(s)	65, 615
RruI	TCGCGA	1 cut(s)	338
RsaI	GTAC	2 cut(s)	286, 488
RsaNI	GTAC	2 cut(s)	285, 487
RseI	CAYNNNNRTG	2 cut(s)	627, 818
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	2 cut(s)	294, 365
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	8 cut(s)	65, 72, 165, 169, 615, 690, 751, 831
Sau96I	GGNCC	4 cut(s)	374, 572, 746, 792
SchI	GAGTC	1 cut(s)	639
ScrFI	CCNGG	4 cut(s)	99, 332, 650, 767
SetI	ASST	7 cut(s)	50, 119, 228, 300, 442, 507, 739
SfaNI	GCATC	7 cut(s)	103, 187, 208, 316, 442, 688, 822
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	4 cut(s)	374, 572, 746, 792
SmiMI	CAYNNNNRTG	2 cut(s)	627, 818
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	4 cut(s)	144, 362, 427, 549
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	2 cut(s)	273, 732
SspMI	CTAG	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	4 cut(s)	97, 330, 648, 765
StyI	CCWWGG	2 cut(s)	796, 873
TaaI	ACNGT	5 cut(s)	370, 604, 718, 782, 844
TaqI	TCGA	2 cut(s)	149, 168
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	4 cut(s)	144, 362, 427, 549
TatI	WGTACW	2 cut(s)	284, 486
TfiI	GAWTC	4 cut(s)	314, 416, 786, 801
Tru1I	TTAA	2 cut(s)	294, 365
Tru9I	TTAA	2 cut(s)	294, 365
TscAI	CASTG	4 cut(s)	61, 127, 787, 847
TseFI	GTSAC	2 cut(s)	52, 128
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	2 cut(s)	52, 128
TspGWI	ACGGA	2 cut(s)	307, 750
TspRI	CASTG	4 cut(s)	61, 127, 787, 847
VpaK11BI	GGWCC	4 cut(s)	374, 572, 746, 792
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	3 cut(s)	96, 202, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.