Rorug01G0464400

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002614
Physical Location & Seq
Forward (+)
55692859 .. 55700446
7588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0464400.1

Sequence Viewer

Length: 3246 bp
ATGATAATCAAGAAGAATTTGAAATCGCAAATGCCGAGTCTGAAACGGTGCAAAATCGGTGATTCGGAGGAGGACGAGAGCTCGGGGAGGAAGAAGAGGAGGACTAATGGGTACTACCCGCTCAATTTGCTCGGCGAGGTGGCGGCGGGGATTATTCCGGTGAGCTTCAGGGGCTTGCTTGGGTCGGTTGCTGCGGCGGAGAAGGGAGGAGGGTTTTCGTGGTGCACTGAAGTGTCGTGCTCGCCGCCTCCGGAGGAGGAGGCGGAGTCGAAATCAAAGGTATGCAAATCCGCAAAAGGAAAGGCTGAGGTTTCGCGGCCGCCGCTGGTGAGGACGTCGAGGGGACGTGTTCAGGTACTGCCTTCTCGGTTTAATGACTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGTTTGCGTGGTGATAGTAATGTTGAAGATGAGAAGCCTAGCTTGAAACCCCAGAAAAATGGAAAGAAGCTAGGGAATAATGTGTATGGCTCGAAGAAGTATTCGGGTTTGTGTGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGATGAAGATGGGTATGTGCCGTTTAAGAGTTATAACATGAGGAAGTATAACTCCAGCTCACGTAGCACACTCACTTCAGTGCATGAGCATTTGGTTGAAGATGACAAGTGTGCGGTTGTGGAGATTATTGAAGAAGAAGAAGAAGAAGATGATTTAGAGGGTGCAGTGAGGATTTCAAATCAGAGGACAGATGGGTTGTATGGACCGGAGGACTTTTATTCCGGTGATATAGTGTGGGCAAAGCCAGGGAAAAAGGAGCCCTTTTGGCCTGCCATTGTTATTGATCCAATGACACAAGCGCCGGAGCTGGTTTTGAGGGCTTGCATACCTGATGCAGCTTGTGTCATGTTTTTCGGTTACTCTGGGAATGAGAACCAAAGGGATTATGCCTGGGTTAAAAGGGGATCACTTTTTCCATTTATGGATTATATAGACAGGTTTCAAGAGCAGACTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGCATTTTTGGTGGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTCGACTATCAGTTTGTGGACCAGCAGGACATCTATCGGAAGAAGAAAGATGCAAGAGTCTGTGAAGGCTGTGGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTTAACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTCCGGTGTGATGGTTGCAGAGTATGGGTGCATGCAGAATGTGATAGAATTAACACCAATTATTATAAGAATTTGGGGGGCACTGATTATTTCTGCCCTCCTTGCAAAGTAAAGTTTAACTTTGAATTGTCAGATTCTGAAAAGGAGCAACCAAAAGTCAAGTGTAGATCTACTAAAAATGAGGCACAACTGGTGCTGCCTAACAAGGTTACTGTTCTCTGTAACGGTGTGGAAGGCATATATTTTCCAAGTCTTCACTCTGTTGTGTGCAAGTGTGGGTACTGTGGGACAGAAAAGCAAGCGCTTAGTGAATGGGAGCGACACACAGGTTCCAAGTCCAGAAATTGGAGGACTAGTGTCAGAGTTAAAGGCTCCTTATTGGCACTGGAACAATGGATGCTGCAGTTAGCAGAGTTTCATGAAAATGCTCTTGTGTCTGTTAAACCACCTAAACGACCTTCTATTAAAGAACGGAAGCAAAAATTGCTCACTTTTTTGCAAGAAAAGTATGAACCCGTTTATGCGAAGTGGACAACAGAGCGATGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAATCATCATATGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTCCGGGATTTCACTTCATGGGTTTGCAAAGCATGTGAAACTCCTGAAGTCAAGAGAGAATGTTGCCTCTGTCCTGTTAAAGGAGGTGCTTTAAAGCCAACTGATATTGAGACATTGTGGGTTCATATTACATGCGCTTGGTTCAGACCTGAAGTGTCGTTTGCAAGTGATGAGAAGATGGAGCCTGCTCTTGGTATCTTGAGTATTCCATCAAATTCTTTTGTCAAGATTTGTGTAATCTGTAAGCAAATTCATGGTTCATGCACACAATGTAGCAGGTGCTCCACTTATTACCATGCAATGTGTGCATCCAGGGCAGGGTACCGCATGGAGTTGCACTCTTTAGAGAAAAATGGGAAACAGATTACAAAAATGGTTTCCTATTGCGCTTATCACAGGGCTCCAAATCCAGATACGGTCTTAATTATACAGACTCCTCTAGGAGTGTTTTCAGCCAAAAGCCTTCTCCAAAGTAAGAAGAGGCCTGGTTCAAGGCTAATTTCATCTAATAGAATAAAGTTGGAAGAGGTTCCAACTGTTGAAACGACTGAACCTGAGCCAGTATCTTCTGCAAGGTGCCGAATATTTAAAAGATTGAAAGATAGTAGGAAGAGAACAGAAGAAGAAGCTGTTGCCCACCAAGTGATGGGACATTCCCATCATCCCTTGGAAGCAATTCGAAGTTTGAACAAATTCAGAGTAGTAGAGGAACCTCTAACTTTTTCATCTTTTAGAGAACGGCTTTACCATTTACAGAGAACCGAAAAAGATCGTGTTTGCTTTGGCAGATCCGGGATACATGGATGGGGTCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTCCTTGAATACCGTGGTGAACAGGTGAGGCGTAGTATTGCAGATTTGAGGGAGGCACGATATAGATCAGAAGGCAAAGACTGTTACCTTTTTAAGATTAGCGAAGAAGTGGTAGTAGATGCCACCGATAAAGGAAATATAGCACGGCTGATCAATCATTCGTGCATGCCCAATTGTTATGCGAGGATCATGAGTGTTGGTGATGAGGAAAGCCGGATTGTACTTATTGCAAAGACTAATGTATCTGCGGGTGACGAGCTAACGTATGATTACTTGTTTGATCCAAATGAGCCTGATGAATTCAAAGTTCCTTGTCTATGTAAAGCTCCCAACTGCCGGAAATTCATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00010 ko00030 ko01100 ko01120 ko01200 map00010 map00030 map01100 map01120 map01200
Pfam Domains
Protein Families
Aldedh

Protein Analysis

1081

Amino Acids

122.87

Weight (kDa)

7.95

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 263 - 356 1.4e-13 PWWP domain
PHD PF00628 453 - 502 2.5e-07 PHD-finger
PHD_2 PF13831 661 - 695 3.1e-11 PHD-finger
zf-HC5HC2H_2 PF13832 702 - 814 1e-27 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 724 - 815 3.1e-13 PHD-like zinc-binding domain
SET PF00856 950 - 1055 7.6e-25 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 597, 1467
AarI CACCTGC 1 cut(s) 2313
AatII GACGTC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 2313
Acc65I GGTACC 1 cut(s) 2367
AccB1I GGYRCC 2 cut(s) 2367, 2622
AccB7I CCANNNNNTGG 2 cut(s) 1746, 2692
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 1 cut(s) 316
AccIII TCCGGA 1 cut(s) 250
AclWI GGATC 7 cut(s) 842, 976, 1086, 1278, 2829, 3086, 3167
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 7 cut(s) 16, 1471, 2260, 2295, 2738, 3191, 3233
AcuI CTGAAG 5 cut(s) 151, 249, 624, 2112, 2217
AcyI GRCGYC 1 cut(s) 335
AdeI CACNNNGTG 1 cut(s) 2689
AfaI GTAC 6 cut(s) 113, 357, 1152, 1682, 2369, 3114
AfeI AGCGCT 1 cut(s) 1704
AfiI CCNNNNNNNGG 7 cut(s) 1391, 1746, 2126, 2237, 2364, 2692, 3228
AflIII ACRYGT 3 cut(s) 346, 1351, 2044
AhlI ACTAGT 2 cut(s) 413, 1754
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 4 cut(s) 808, 953, 2357, 2530
AleI CACNNNNGTG 2 cut(s) 230, 641
Alw21I GWGCWC 4 cut(s) 83, 227, 242, 2330
Alw26I GTCTC 2 cut(s) 2150, 2861
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 7 cut(s) 842, 976, 1086, 1278, 2829, 3086, 3167
AlwNI CAGNNNCTG 2 cut(s) 358, 1538
Ama87I CYCGRG 1 cut(s) 82
Aor13HI TCCGGA 1 cut(s) 250
Aor51HI AGCGCT 1 cut(s) 1704
AoxI GGCC 3 cut(s) 317, 830, 2528
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 5 cut(s) 191, 899, 1121, 1597, 1801
ApoI RAATTY 7 cut(s) 16, 1471, 2260, 2295, 2738, 3191, 3233
ArsI GACNNNNNNTTYG 4 cut(s) 22, 54, 1187, 1219
Asp700I GAANNNNTTC 3 cut(s) 2574, 2721, 2738
Asp718I GGTACC 1 cut(s) 2367
AspLEI GCGC 4 cut(s) 865, 1705, 2183, 2435
AspS9I GGNCC 4 cut(s) 767, 1210, 1402, 2893
AsuC2I CCSGG 2 cut(s) 2051, 2839
AsuHPI GGTGA 9 cut(s) 71, 172, 340, 437, 800, 2921, 2929, 3104, 3155
AsuII TTCGAA 1 cut(s) 2725
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 4 cut(s) 767, 1210, 1402, 2893
BaeGI GKGCMC 2 cut(s) 227, 1484
BaeI ACNNNNGTAYC 2 cut(s) 3117, 3150
BanI GGYRCC 2 cut(s) 2367, 2622
BanII GRGCYC 3 cut(s) 83, 825, 2449
BbsI GAAGAC 2 cut(s) 1646, 1974
Bbv12I GWGCWC 4 cut(s) 83, 227, 242, 2330
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 5 cut(s) 178, 911, 1133, 1584, 1788
BceAI ACGGC 3 cut(s) 568, 2801, 3053
BciT130I CCWGG 4 cut(s) 810, 955, 2359, 2532
BciVI GTATCC 1 cut(s) 2835
BclI TGATCA 1 cut(s) 3042
BcnI CCSGG 2 cut(s) 2051, 2839
BcoDI GTCTC 2 cut(s) 2150, 2861
BcuI ACTAGT 2 cut(s) 413, 1754
BfaI CTAG 5 cut(s) 414, 453, 485, 1755, 2486
BfmI CTRYAG 1 cut(s) 1802
BfoI RGCGCY 2 cut(s) 866, 1706
BfuAI ACCTGC 1 cut(s) 2313
BfuI GTATCC 1 cut(s) 2835
BglI GCCNNNNNGGC 1 cut(s) 829
BglII AGATCT 1 cut(s) 1568
Bme1390I CCNGG 6 cut(s) 810, 955, 2051, 2359, 2532, 2839
Bme18I GGWCC 4 cut(s) 767, 1210, 1402, 2893
BmeT110I CYCGRG 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 4 cut(s) 767, 1210, 1402, 2893
BmrFI CCNGG 6 cut(s) 810, 955, 2051, 2359, 2532, 2839
BmrI ACTGGG 3 cut(s) 1031, 1127, 1981
BmsI GCATC 5 cut(s) 886, 1231, 1788, 2363, 3001
BmuI ACTGGG 3 cut(s) 1031, 1127, 1981
BoxI GACNNNNGTC 1 cut(s) 1757
BpiI GAAGAC 2 cut(s) 1646, 1974
BplI GAGNNNNNCTC 2 cut(s) 2369, 2401
BpmI CTGGAG 2 cut(s) 601, 1329
Bpu10I CCTNAGC 2 cut(s) 306, 2601
Bpu14I TTCGAA 1 cut(s) 2725
BpuEI CTTGAG 1 cut(s) 2266
BpuMI CCSGG 2 cut(s) 2051, 2839
BsaAI YACGTR 2 cut(s) 626, 2867
BsaBI GATNNNNATC 1 cut(s) 2956
BsaHI GRCGYC 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 2861
BsaJI CCNNGG 5 cut(s) 809, 954, 2358, 2712, 2905
BsaWI WCCGGW 5 cut(s) 157, 250, 769, 785, 1404
BsaXI ACNNNNNCTCC 6 cut(s) 251, 281, 1741, 1771, 2877, 2907
Bsc4I CCNNNNNNNGG 7 cut(s) 1391, 1746, 2126, 2237, 2364, 2692, 3228
Bse1I ACTGG 7 cut(s) 1026, 1133, 1180, 1596, 1791, 1976, 2606
Bse3DI GCAATG 1 cut(s) 2352
Bse8I GATNNNNATC 1 cut(s) 2956
BseAI TCCGGA 1 cut(s) 250
BseBI CCWGG 4 cut(s) 810, 955, 2359, 2532
BseDI CCNNGG 5 cut(s) 809, 954, 2358, 2712, 2905
BseGI GGATG 4 cut(s) 1803, 2354, 2707, 2855
BseJI GATNNNNATC 1 cut(s) 2956
BseLI CCNNNNNNNGG 7 cut(s) 1391, 1746, 2126, 2237, 2364, 2692, 3228
BseMI GCAATG 1 cut(s) 2352
BseMII CTCAG 3 cut(s) 297, 1050, 2592
BseNI ACTGG 7 cut(s) 1026, 1133, 1180, 1596, 1791, 1976, 2606
BseSI GKGCMC 2 cut(s) 227, 1484
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 5 cut(s) 178, 911, 1133, 1584, 1788
BseYI CCCAGC 1 cut(s) 1124
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 3 cut(s) 319, 832, 2530
BshNI GGYRCC 2 cut(s) 2367, 2622
BsiEI CGRYCG 1 cut(s) 320
BsiHKAI GWGCWC 4 cut(s) 83, 227, 242, 2330
BsiHKCI CYCGRG 1 cut(s) 82
BslFI GGGAC 4 cut(s) 357, 1702, 1988, 2709
BslI CCNNNNNNNGG 7 cut(s) 1391, 1746, 2126, 2237, 2364, 2692, 3228
BsmAI GTCTC 2 cut(s) 2150, 2861
BsmFI GGGAC 4 cut(s) 357, 1702, 1988, 2709
BsmI GAATGC 2 cut(s) 1284, 2033
BsnI GGCC 3 cut(s) 319, 832, 2530
Bso31I GGTCTC 1 cut(s) 2861
BsoBI CYCGRG 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 2725
Bsp1286I GDGCHC 7 cut(s) 83, 227, 242, 825, 1484, 2330, 2449
Bsp13I TCCGGA 1 cut(s) 250
BspANI GGCC 3 cut(s) 319, 832, 2530
BspCNI CTCAG 3 cut(s) 298, 1051, 2593
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 1 cut(s) 316
BspHI TCATGA 4 cut(s) 1186, 1819, 3081, 3237
BspMAI CTGCAG 1 cut(s) 1806
BspMI ACCTGC 1 cut(s) 2313
BspPI GGATC 7 cut(s) 842, 976, 1086, 1278, 2829, 3086, 3167
BspT104I TTCGAA 1 cut(s) 2725
BspT107I GGYRCC 2 cut(s) 2367, 2622
BspTNI GGTCTC 1 cut(s) 2861
BsrBI CCGCTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 2352
BsrI ACTGG 7 cut(s) 1026, 1133, 1180, 1596, 1791, 1976, 2606
BssECI CCNNGG 5 cut(s) 809, 954, 2358, 2712, 2905
BssNI GRCGYC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 2712
Bst2UI CCWGG 4 cut(s) 810, 955, 2359, 2532
Bst4CI ACNGT 9 cut(s) 48, 1391, 1615, 1628, 1685, 2464, 2584, 2906, 2975
Bst6I CTCTTC 6 cut(s) 89, 531, 549, 2519, 2565, 2651
BstACI GRCGYC 1 cut(s) 335
BstAPI GCANNNNNTGC 2 cut(s) 1885, 2351
BstBAI YACGTR 2 cut(s) 626, 2867
BstBI TTCGAA 1 cut(s) 2725
BstC8I GCNNGC 9 cut(s) 176, 242, 834, 886, 1034, 1434, 1701, 2232, 3059
BstDEI CTNAG 7 cut(s) 306, 1059, 1154, 1274, 1338, 1706, 2601
BstDSI CCRYGG 1 cut(s) 2905
BstENI CCTNNNNNAGG 1 cut(s) 2124
BstF5I GGATG 4 cut(s) 1803, 2354, 2707, 2855
BstFNI CGCG 1 cut(s) 316
BstH2I RGCGCY 2 cut(s) 866, 1706
BstHHI GCGC 4 cut(s) 865, 1705, 2183, 2435
BstMAI GTCTC 2 cut(s) 2150, 2861
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 9 cut(s) 127, 171, 322, 627, 829, 1503, 1885, 2351, 2360
BstNI CCWGG 4 cut(s) 810, 955, 2359, 2532
BstNSI RCATGY 6 cut(s) 1355, 1436, 2048, 2082, 2181, 3061
BstPAI GACNNNNGTC 1 cut(s) 1757
BstSCI CCNGG 6 cut(s) 808, 953, 2049, 2357, 2530, 2837
BstSFI CTRYAG 1 cut(s) 1802
BstSLI GKGCMC 2 cut(s) 227, 1484
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 5 cut(s) 178, 911, 1133, 1584, 1788
BstV2I GAAGAC 2 cut(s) 1646, 1974
BstX2I RGATCY 3 cut(s) 1270, 1568, 2834
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 3 cut(s) 1270, 1568, 2834
BstZI CGGCCG 1 cut(s) 317
BsuI GTATCC 1 cut(s) 2835
BsuRI GGCC 3 cut(s) 319, 832, 2530
BtgI CCRYGG 1 cut(s) 2905
BtgZI GCGATG 1 cut(s) 1957
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 4 cut(s) 1803, 2354, 2707, 2855
BtsI GCAGTG 1 cut(s) 735
BtsIMutI CAGTG 7 cut(s) 225, 648, 735, 1140, 1396, 1482, 1784
BveI ACCTGC 1 cut(s) 2313
Cac8I GCNNGC 9 cut(s) 176, 242, 834, 886, 1034, 1434, 1701, 2232, 3059
CaiI CAGNNNCTG 2 cut(s) 358, 1538
CciI TCATGA 4 cut(s) 1186, 1819, 3081, 3237
CciNI GCGGCCGC 1 cut(s) 317
CfoI GCGC 4 cut(s) 865, 1705, 2183, 2435
Cfr13I GGNCC 4 cut(s) 767, 1210, 1402, 2893
Csp6I GTAC 6 cut(s) 112, 356, 1151, 1681, 2368, 3113
CviQI GTAC 6 cut(s) 112, 356, 1151, 1681, 2368, 3113
DdeI CTNAG 7 cut(s) 306, 1059, 1154, 1274, 1338, 1706, 2601
DraI TTTAAA 2 cut(s) 2139, 2635
DraIII CACNNNGTG 1 cut(s) 2689
EaeI YGGCCR 1 cut(s) 317
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 6 cut(s) 89, 531, 549, 2519, 2565, 2651
EarI CTCTTC 6 cut(s) 89, 531, 549, 2519, 2565, 2651
EciI GGCGGA 2 cut(s) 212, 278
Ecl136II GAGCTC 1 cut(s) 81
EclXI CGGCCG 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 2712
Eco147I AGGCCT 1 cut(s) 2530
Eco24I GRGCYC 3 cut(s) 83, 825, 2449
Eco31I GGTCTC 1 cut(s) 2861
Eco47I GGWCC 4 cut(s) 767, 1210, 1402, 2893
Eco47III AGCGCT 1 cut(s) 1704
Eco52I CGGCCG 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 5 cut(s) 151, 249, 624, 2112, 2217
Eco88I CYCGRG 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 2124
EcoRI GAATTC 1 cut(s) 3191
EcoRII CCWGG 4 cut(s) 808, 953, 2357, 2530
EcoT14I CCWWGG 1 cut(s) 2712
EcoT38I GRGCYC 3 cut(s) 83, 825, 2449
ErhI CCWWGG 1 cut(s) 2712
FalI AAGNNNNNCTT 6 cut(s) 440, 472, 809, 841, 1505, 1537
FaqI GGGAC 4 cut(s) 357, 1702, 1988, 2709
FauI CCCGC 3 cut(s) 126, 139, 3133
FauNDI CATATG 2 cut(s) 1364, 1994
FbaI TGATCA 1 cut(s) 3042
FokI GGATG 4 cut(s) 1810, 2341, 2694, 2862
FriOI GRGCYC 3 cut(s) 83, 825, 2449
FspBI CTAG 5 cut(s) 414, 453, 485, 1755, 2486
GlaI GCGC 4 cut(s) 864, 1704, 2182, 2434
GsaI CCCAGC 1 cut(s) 1128
GsuI CTGGAG 2 cut(s) 601, 1329
HaeII RGCGCY 2 cut(s) 866, 1706
HaeIII GGCC 3 cut(s) 319, 832, 2530
HhaI GCGC 4 cut(s) 865, 1705, 2183, 2435
Hin1I GRCGYC 1 cut(s) 335
Hin6I GCGC 4 cut(s) 863, 1703, 2181, 2433
HinP1I GCGC 4 cut(s) 863, 1703, 2181, 2433
HincII GTYRAC 1 cut(s) 1344
HindII GTYRAC 1 cut(s) 1344
HinfI GANTC 9 cut(s) 37, 62, 266, 377, 1145, 1248, 1378, 1535, 2479
HpaI GTTAAC 1 cut(s) 1344
HphI GGTGA 9 cut(s) 71, 172, 340, 437, 800, 2921, 2929, 3104, 3155
Hpy166II GTNNAC 6 cut(s) 225, 1089, 1210, 1344, 1932, 2912
Hpy8I GTNNAC 6 cut(s) 225, 1089, 1210, 1344, 1932, 2912
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 9 cut(s) 196, 372, 1250, 1288, 1628, 1869, 2519, 2876, 2957
HpyCH4III ACNGT 9 cut(s) 48, 1391, 1615, 1628, 1685, 2464, 2584, 2906, 2975
HpyCH4IV ACGT 5 cut(s) 335, 346, 625, 2866, 3155
HpyF10VI GCNNNNNNNGC 9 cut(s) 127, 171, 322, 627, 829, 1503, 1885, 2351, 2360
HpyF3I CTNAG 7 cut(s) 306, 1059, 1154, 1274, 1338, 1706, 2601
HpySE526I ACGT 5 cut(s) 335, 346, 625, 2866, 3155
Hsp92I GRCGYC 1 cut(s) 335
HspAI GCGC 4 cut(s) 863, 1703, 2181, 2433
Kpn2I TCCGGA 1 cut(s) 250
KpnI GGTACC 1 cut(s) 2371
Ksp22I TGATCA 1 cut(s) 3042
KspAI GTTAAC 1 cut(s) 1344
Lsp1109I GCAGC 5 cut(s) 178, 911, 1133, 1584, 1788
LweI GCATC 5 cut(s) 886, 1231, 1788, 2363, 3001
MaeI CTAG 5 cut(s) 414, 453, 485, 1755, 2486
MaeII ACGT 5 cut(s) 335, 346, 625, 2866, 3155
MaeIII GTNAC 5 cut(s) 920, 1609, 1622, 2975, 3143
MbiI CCGCTC 1 cut(s) 121
MfeI CAATTG 1 cut(s) 3064
MflI RGATCY 3 cut(s) 1270, 1568, 2834
MhlI GDGCHC 7 cut(s) 83, 227, 242, 825, 1484, 2330, 2449
MlyI GAGTC 5 cut(s) 46, 275, 371, 1257, 2473
MmeI TCCRAC 2 cut(s) 2547, 2603
MroI TCCGGA 1 cut(s) 250
MroXI GAANNNNTTC 3 cut(s) 2574, 2721, 2738
MslI CAYNNNNRTG 4 cut(s) 230, 641, 1356, 1824
MspA1I CMGCKG 2 cut(s) 325, 1124
MspR9I CCNGG 6 cut(s) 810, 955, 2051, 2359, 2532, 2839
MunI CAATTG 1 cut(s) 3064
Mva1269I GAATGC 2 cut(s) 1284, 2033
MvaI CCWGG 4 cut(s) 810, 955, 2359, 2532
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 9 cut(s) 127, 171, 322, 627, 829, 1503, 1885, 2351, 2360
NciI CCSGG 2 cut(s) 2051, 2839
NdeI CATATG 2 cut(s) 1364, 1994
NmeAIII GCCGAG 2 cut(s) 60, 111
NmuCI GTSAC 1 cut(s) 3143
NotI GCGGCCGC 1 cut(s) 317
NspI RCATGY 6 cut(s) 1355, 1436, 2048, 2082, 2181, 3061
NspV TTCGAA 1 cut(s) 2725
OliI CACNNNNGTG 2 cut(s) 230, 641
PaeI GCATGC 2 cut(s) 1436, 3061
PagI TCATGA 4 cut(s) 1186, 1819, 3081, 3237
PaqCI CACCTGC 1 cut(s) 2313
PceI AGGCCT 1 cut(s) 2530
PciI ACATGT 2 cut(s) 1351, 2044
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 2 cut(s) 1284, 2033
PdmI GAANNNNTTC 3 cut(s) 2574, 2721, 2738
PfeI GAWTC 4 cut(s) 62, 1145, 1378, 1535
PflMI CCANNNNNTGG 2 cut(s) 1746, 2692
PfoI TCCNGGA 2 cut(s) 2049, 2837
PleI GAGTC 5 cut(s) 45, 274, 371, 1256, 2473
PpsI GAGTC 5 cut(s) 45, 274, 371, 1256, 2473
Ppu21I YACGTR 2 cut(s) 626, 2867
PscI ACATGT 2 cut(s) 1351, 2044
PshAI GACNNNNGTC 1 cut(s) 1757
PsiI TTATAA 2 cut(s) 597, 1467
Psp124BI GAGCTC 1 cut(s) 83
Psp6I CCWGG 4 cut(s) 808, 953, 2357, 2530
PspFI CCCAGC 1 cut(s) 1124
PspGI CCWGG 4 cut(s) 808, 953, 2357, 2530
PspPI GGNCC 4 cut(s) 767, 1210, 1402, 2893
PstI CTGCAG 1 cut(s) 1806
PstNI CAGNNNCTG 2 cut(s) 358, 1538
PsuI RGATCY 3 cut(s) 1270, 1568, 2834
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 6 cut(s) 113, 357, 1152, 1682, 2369, 3114
RsaNI GTAC 6 cut(s) 112, 356, 1151, 1681, 2368, 3113
RseI CAYNNNNRTG 4 cut(s) 230, 641, 1356, 1824
SacI GAGCTC 1 cut(s) 83
Sau96I GGNCC 4 cut(s) 767, 1210, 1402, 2893
SchI GAGTC 5 cut(s) 46, 275, 371, 1257, 2473
ScrFI CCNGG 6 cut(s) 810, 955, 2051, 2359, 2532, 2839
SduI GDGCHC 7 cut(s) 83, 227, 242, 825, 1484, 2330, 2449
SfaNI GCATC 5 cut(s) 886, 1231, 1788, 2363, 3001
SfcI CTRYAG 1 cut(s) 1802
SfuI TTCGAA 1 cut(s) 2725
SinI GGWCC 4 cut(s) 767, 1210, 1402, 2893
SmiMI CAYNNNNRTG 4 cut(s) 230, 641, 1356, 1824
SmlI CTYRAG 1 cut(s) 2245
SmoI CTYRAG 1 cut(s) 2245
SpeI ACTAGT 2 cut(s) 413, 1754
SphI GCATGC 2 cut(s) 1436, 3061
SseBI AGGCCT 1 cut(s) 2530
SspI AATATT 1 cut(s) 2631
SspMI CTAG 5 cut(s) 414, 453, 485, 1755, 2486
SstI GAGCTC 1 cut(s) 83
StuI AGGCCT 1 cut(s) 2530
StyD4I CCNGG 6 cut(s) 808, 953, 2049, 2357, 2530, 2837
StyI CCWWGG 1 cut(s) 2712
TaaI ACNGT 9 cut(s) 48, 1391, 1615, 1628, 1685, 2464, 2584, 2906, 2975
TaiI ACGT 5 cut(s) 338, 349, 628, 2869, 3158
TaqI TCGA 5 cut(s) 269, 338, 506, 1194, 2725
TatI WGTACW 1 cut(s) 3112
TauI GCSGC 6 cut(s) 146, 197, 247, 319, 322, 325
TfiI GAWTC 4 cut(s) 62, 1145, 1378, 1535
TscAI CASTG 7 cut(s) 232, 648, 735, 1140, 1396, 1489, 1791
TseFI GTSAC 1 cut(s) 3143
TseI GCWGC 5 cut(s) 191, 899, 1121, 1597, 1801
Tsp45I GTSAC 1 cut(s) 3143
TspGWI ACGGA 2 cut(s) 1138, 1888
TspRI CASTG 7 cut(s) 232, 648, 735, 1140, 1396, 1489, 1791
Van91I CCANNNNNTGG 2 cut(s) 1746, 2692
VneI GTGCAC 1 cut(s) 223
VpaK11BI GGWCC 4 cut(s) 767, 1210, 1402, 2893
XagI CCTNNNNNAGG 1 cut(s) 2124
XapI RAATTY 7 cut(s) 16, 1471, 2260, 2295, 2738, 3191, 3233
XceI RCATGY 6 cut(s) 1355, 1436, 2048, 2082, 2181, 3061
XmnI GAANNNNTTC 3 cut(s) 2574, 2721, 2738
XspI CTAG 5 cut(s) 414, 453, 485, 1755, 2486
ZraI GACGTC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.