Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026593.1

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Forward (+)

18217 .. 18651

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026593.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgtcaggagatgaagttgaggttcccgttcctgttgagcctgtagctgctgctccagctctaggtgagcccatggacctcatgacagcattgcaacttgtgcttaggaagtcattggctcatggtgggcttacacggggcctgcatgaagctgccaaggtcattgagaagcatgctgcacagctttgtgttttggctgaggactgcgaccaggctgattatgttaagctggtgaagtcactgtgtgcagagcataatgttaacctaatgacaattcctagtgctaaaactcttggagaatggtctgggctttgcaagattgattctgaagggaaggcaagaaaggtcgttggttgctcttgcgttgttgtcaaggattttggtgaagatacagaaggccttcatgttgttcaggagtacgtgaagtcccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

144

Amino Acids

15.37

Weight (kDa)

5.3

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	348
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	5 cut(s)	47, 59, 152, 184, 229
AluI	AGCT	5 cut(s)	47, 59, 152, 184, 229
AoxI	GGCC	2 cut(s)	139, 397
ApeKI	GCWGC	4 cut(s)	47, 50, 152, 176
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	76, 139
AsuHPI	GGTGA	3 cut(s)	77, 244, 395
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	34, 37, 139, 163
BciT130I	CCWGG	1 cut(s)	212
BfaI	CTAG	2 cut(s)	62, 279
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	4 cut(s)	48, 51, 153, 177
BlsI	GCNGC	4 cut(s)	49, 52, 154, 178
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 139
BmiI	GGNNCC	2 cut(s)	24, 140
BmrFI	CCNGG	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	104, 198
BsaAI	YACGTR	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	72, 156
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	72, 156
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	34, 37, 139, 163
BsgI	GTGCAG	2 cut(s)	162, 267
BshFI	GGCC	2 cut(s)	141, 399
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	141, 399
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	2 cut(s)	141, 399
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	24, 140
BsrDI	GCAATG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	72, 156
BssT1I	CCWWGG	2 cut(s)	72, 156
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	143, 174
BstDEI	CTNAG	2 cut(s)	104, 198
BstDSI	CCRYGG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 100
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	4 cut(s)	34, 37, 139, 163
BsuRI	GGCC	2 cut(s)	141, 399
BtgI	CCRYGG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	143, 174
CciI	TCATGA	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	76, 139
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	6 cut(s)	73, 82, 122, 146, 173, 404
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	2 cut(s)	104, 198
DraIII	CACNNNGTG	1 cut(s)	245
Eco130I	CCWWGG	2 cut(s)	72, 156
Eco147I	AGGCCT	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	72, 156
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	72, 156
FaeI	CATG	6 cut(s)	76, 85, 125, 149, 176, 407
FaiI	YATR	8 cut(s)	74, 83, 123, 147, 174, 222, 255, 405
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	6 cut(s)	72, 81, 121, 145, 172, 403
Fnu4HI	GCNGC	4 cut(s)	48, 51, 153, 177
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	4 cut(s)	48, 51, 153, 177
FspBI	CTAG	2 cut(s)	62, 279
GluI	GCNGC	4 cut(s)	48, 51, 153, 177
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	141, 399
Hin1II	CATG	6 cut(s)	76, 85, 125, 149, 176, 407
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	323
HpaI	GTTAAC	1 cut(s)	262
HphI	GGTGA	3 cut(s)	77, 244, 395
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	3 cut(s)	6, 82, 413
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	4 cut(s)	323, 328, 389, 410
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	5 cut(s)	94, 145, 179, 248, 315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 100
HpyF3I	CTNAG	2 cut(s)	104, 198
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	6 cut(s)	76, 85, 125, 149, 176, 407
KspAI	GTTAAC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	9 cut(s)	45, 54, 69, 155, 197, 215, 224, 291, 398
Lsp1109I	GCAGC	4 cut(s)	34, 37, 139, 163
MaeI	CTAG	2 cut(s)	62, 279
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	3 cut(s)	13, 89, 193
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	3 cut(s)	225, 261, 433
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	56, 100
NcoI	CCATGG	1 cut(s)	72
NlaIII	CATG	6 cut(s)	76, 85, 125, 149, 176, 407
NlaIV	GGNNCC	2 cut(s)	24, 140
NmuCI	GTSAC	1 cut(s)	237
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PagI	TCATGA	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	4 cut(s)	49, 52, 154, 178
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	24, 140
PspPI	GGNCC	2 cut(s)	76, 139
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SaqAI	TTAA	3 cut(s)	225, 261, 433
SatI	GCNGC	4 cut(s)	48, 51, 153, 177
Sau96I	GGNCC	2 cut(s)	76, 139
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	76
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	399
SspMI	CTAG	2 cut(s)	62, 279
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	2 cut(s)	72, 156
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	1 cut(s)	423
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	225, 261, 433
Tru9I	TTAA	3 cut(s)	225, 261, 433
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	4 cut(s)	47, 50, 152, 176
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	3 cut(s)	27, 162, 392
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	62, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.